April 2016 - Echobase-commits - mailman.cloud.codelutin.com

branch feature/#8171 updated (5f7e91b -> 66d4724)
by codelutin.com scm April 30, 2016

April 30, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/#8171 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 5f7e91b Set a value for the real column adds 25e50c7 Ajout colum SpeciesCategory#lengthClass (report final) (See #8297) adds a0265ce Au final la migration sera en 3.905 car je risque d'avoir encore une ou deux migrtions à faire avant. adds 66d4724 Migration 3.902 (See #8297) No new revisions were added by this update. Summary of changes: .../WorkingDbMigrationCallBackForVersion3_902.java | 13 ++++--------- ...WorkingDbMigrationCallBackForVersion3_905.java} | 8 ++++---- .../3.902-0-add-SpeciesCategory_lengthClass.sql | 1 + ...1-insert-ports.sql => 3.905-1-insert-ports.sql} | 0 ...0-update-model.sql => 3.905-0-update-model.sql} | 0 ...0-update-model.sql => 3.905-0-update-model.sql} | 0 echobase-domain/src/main/xmi/echobase.properties | 2 +- echobase-domain/src/main/xmi/echobase.zargo | Bin 98216 -> 98306 bytes .../resources/echobase-importDb-referentiel.zip | Bin 50920 -> 50556 bytes .../echobase-catches-and-voyage-result.h2.db.gz | Bin 632318 -> 630979 bytes .../import-data/echobase-commonData.h2.db.gz | Bin 183714 -> 184388 bytes .../resources/import-data/echobase-nodata.h2.db.gz | Bin 136848 -> 137434 bytes .../echobase-operation-total-samples.h2.db.gz | Bin 602363 -> 601307 bytes .../import-data/echobase-operation.h2.db.gz | Bin 328618 -> 327903 bytes 14 files changed, 10 insertions(+), 14 deletions(-) copy echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{WorkingDbMigrationCallBackForVersion3_902.java => WorkingDbMigrationCallBackForVersion3_905.java} (80%) create mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.902-0-add-SpeciesCategory_lengthClass.sql rename echobase-domain/src/main/resources/migration/workingDb/{3.902-1-insert-ports.sql => 3.905-1-insert-ports.sql} (100%) rename echobase-domain/src/main/resources/migration/workingDb/h2/{3.902-0-update-model.sql => 3.905-0-update-model.sql} (100%) rename echobase-domain/src/main/resources/migration/workingDb/pg/{3.902-0-update-model.sql => 3.905-0-update-model.sql} (100%) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

branch feature/#8171 updated (0f14ee2 -> 5f7e91b)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/#8171 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 0f14ee2 Rename id to code for Port and Voyage new 8837aa9 Rename constraint name Rename id to code Put all request on one line new c54c4ba Add inserts for the ports new e749b0b Create migration for postgresql new 8804513 Create migration class new 5f7e91b Set a value for the real column The 5 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 5f7e91b6a79f5c960a7119b950dbc31b16c7ea21 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Fri Apr 29 17:02:52 2016 +0200 Set a value for the real column commit 880451333743e051c288e0febc001a2af386a496 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Fri Apr 29 16:55:57 2016 +0200 Create migration class commit e749b0bb203376648269a734651f195a3ee31b93 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Fri Apr 29 15:57:55 2016 +0200 Create migration for postgresql commit c54c4ba2d62eb9fd1c562385f5fd84f21238b46d Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Fri Apr 29 15:50:13 2016 +0200 Add inserts for the ports commit 8837aa961c464b834fdeb156eff87a6051960d9f Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Fri Apr 29 11:47:00 2016 +0200 Rename constraint name Rename id to code Put all request on one line Summary of changes: ...WorkingDbMigrationCallBackForVersion3_902.java} | 18 +- .../migration/workingDb/3.902-1-insert-ports.sql | 4903 ++++++++++++++++++++ .../workingDb/3.910-1-add-new-attributes.sql | 131 - .../workingDb/h2/3.902-0-update-model.sql | 95 + .../workingDb/pg/3.902-0-update-model.sql | 95 + echobase-domain/src/main/xmi/echobase.properties | 2 +- 6 files changed, 5103 insertions(+), 141 deletions(-) copy echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{WorkingDbMigrationCallBackForVersion3_901.java => WorkingDbMigrationCallBackForVersion3_902.java} (60%) create mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.902-1-insert-ports.sql delete mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.910-1-add-new-attributes.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.902-0-update-model.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.902-0-update-model.sql -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 5

branch develop updated (843667b -> 5a9a6fa)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 843667b Revue du commit précédent car c'est uniquement dans les tests qu'on peut créer des SampleDataType à la volée... (See #8295) new 3368926 Utiliser une base avec les bons imports catches new eb72e94 Importer ce qui est nécessaire uniquement pour les esdu et les élementaires (See #8298) new 4d76b38 Mise à jour des tests new 5a9a6fa Livrable #8298 Merge branch 'feature/8298' into develop The 4 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 5a9a6fab58d14e546903e45fd84c897c93d423af Merge: 3368926 4d76b38 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 15:29:44 2016 +0200 Livrable #8298 Merge branch 'feature/8298' into develop commit 4d76b385cd4f74d7a0f99f7662cc7a4ce4c36342 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 15:29:41 2016 +0200 Mise à jour des tests commit eb72e947fe0da828922f8d5fb2188e4d3ceb269e Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 15:29:25 2016 +0200 Importer ce qui est nécessaire uniquement pour les esdu et les élementaires (See #8298) commit 3368926380d4551d463c6c1236244f32ce258f89 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 15:27:45 2016 +0200 Utiliser une base avec les bons imports catches Summary of changes: .../actions/VoyageAcousticsImportAction.java | 30 ++++++++------------- .../csv/VoyageAcousticImportExportModel.java | 4 +-- .../importdata/csv/VoyageAcousticImportRow.java | 6 ++--- .../importdata/VoyageAcousticImportServiceIT.java | 2 +- .../import-data/acoustic/movies_small.csv.gz | Bin 6141 -> 6128 bytes .../import-data/echobase-catches.h2.db.gz | Bin 594894 -> 754466 bytes 6 files changed, 17 insertions(+), 25 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 4

branch develop updated (b0ff79b -> 843667b)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from b0ff79b Livrable #8295 Merge branch 'feature/8295' into develop new 843667b Revue du commit précédent car c'est uniquement dans les tests qu'on peut créer des SampleDataType à la volée... (See #8295) The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 843667b23092790d253dd4c3d3ba94c03126d537 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 13:20:34 2016 +0200 Revue du commit précédent car c'est uniquement dans les tests qu'on peut créer des SampleDataType à la volée... (See #8295) Summary of changes: .../contexts/VoyageCatchesImportDataContext.java | 8 +------- .../VoyageCatchesAllImportServiceIT.java | 8 ++++++++ .../VoyageCatchesImportServiceITSupport.java | 24 ++++++++++++++++++++++ ...geCatchesOnlyBiometrySampleImportServiceIT.java | 8 ++++++++ 4 files changed, 41 insertions(+), 7 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch develop updated (372a7e5 -> b0ff79b)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 372a7e5 Livrable #8294 Merge branch 'feature/8294' into develop new 15ee4d7 Enregistrement d'un sampleData avec le numéro de spéciment lors d'un import de données biométriques (See #8295) new b0ff79b Livrable #8295 Merge branch 'feature/8295' into develop The 2 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit b0ff79b6af28d9a393141162388feea138899674 Merge: 372a7e5 15ee4d7 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 13:07:06 2016 +0200 Livrable #8295 Merge branch 'feature/8295' into develop commit 15ee4d79238dbddae776c0481e2e01ceed415026 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 13:07:03 2016 +0200 Enregistrement d'un sampleData avec le numéro de spéciment lors d'un import de données biométriques (See #8295) Summary of changes: .../entities/references/SampleDataTypeImpl.java | 2 ++ .../services/service/UserDbPersistenceService.java | 20 ++++++++----- .../VoyageCatchesBiometrySampleImportAction.java | 34 +++++++++++++++------- .../contexts/VoyageCatchesImportDataContext.java | 14 +++++++++ .../echobase/services/EchoBaseServiceFixtures.java | 2 +- 5 files changed, 54 insertions(+), 18 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 2

branch develop updated (b51765a -> 372a7e5)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from b51765a formattage new 58a129e Suppression de la colonne units de l'import SubSample (See #8294) new 372a7e5 Livrable #8294 Merge branch 'feature/8294' into develop The 2 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 372a7e53a76ed50fa8ca6fb5384b4c0415550b8a Merge: b51765a 58a129e Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 12:23:51 2016 +0200 Livrable #8294 Merge branch 'feature/8294' into develop commit 58a129ed9af569829976ae719b39025400a92180 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 12:23:48 2016 +0200 Suppression de la colonne units de l'import SubSample (See #8294) Summary of changes: .../actions/VoyageCatchesSubSampleImportAction.java | 4 ---- .../csv/VoyageCatchesSubSampleImportExportModel.java | 5 +---- .../importdata/csv/VoyageCatchesSubSampleImportRow.java | 12 +----------- 3 files changed, 2 insertions(+), 19 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 2

branch develop updated (ab0ced8 -> b51765a)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from ab0ced8 Optimize dependencies adds b51765a formattage No new revisions were added by this update. Summary of changes: src/doc/reunions/reunion_2016-04-05.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

branch develop updated (30322f4 -> ab0ced8)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 30322f4 Ajout liens vers tickets new ab0ced8 Optimize dependencies The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit ab0ced8f24cbf551e0ce168279d4b394d425dcbc Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 12:04:55 2016 +0200 Optimize dependencies Summary of changes: .../services/service/importdata/csv/VoyageAcousticImportRow.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch develop updated (a29df6b -> 30322f4)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from a29df6b Retour sur develop (le modèle est stabilisé restera à effectuer les optimisations pour la génértion des fichiers d'export)" Merge branch 'feature/8170' into develop adds 30322f4 Ajout liens vers tickets No new revisions were added by this update. Summary of changes: src/doc/reunions/reunion_2016-04-05.md | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

branch feature/#8171 updated (a85d3da -> 0f14ee2)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/#8171 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from a85d3da Do no change import/export model new 0f14ee2 Rename id to code for Port and Voyage The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 0f14ee25755843578853a1c7007c200bac7b17dd Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Fri Apr 29 11:32:09 2016 +0200 Rename id to code for Port and Voyage Summary of changes: echobase-domain/src/main/xmi/echobase.properties | 4 ++-- echobase-domain/src/main/xmi/echobase.zargo | Bin 98247 -> 98216 bytes 2 files changed, 2 insertions(+), 2 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch feature/#8171 updated (d361a1a -> a85d3da)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/#8171 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from d361a1a Merge ImportfileId model + fix develop merge new a85d3da Do no change import/export model The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit a85d3da5ad74e67cba79f6e92f9a91a0abe37287 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 10:44:48 2016 +0200 Do no change import/export model Summary of changes: .../importdata/csv/VoyageCommonsTransectImportExportModel.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch feature/#8171 updated (cdce953 -> d361a1a)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/#8171 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git omits cdce953 Create the migration omits 41e21bb Forget channelId omits aadc504 Add missing decorators omits 211f806 Rename comment to comments omits a35a117 Finish modification for the model with tagValues and declaration omits 10edeab Correct model omits 4aafd84 Modify model following #8171 adds 9d7bc43 Revue des import (utilisation java 7 API + reformat code) adds 180efed Ajout d'un checkFile pour chaque importFile adds 4bee302 Mise en place d'une nouvelle API d'action d'import (pour traiter chaque import de fichier unitairement et non plus via des méthodes de services), du coup on ne va plus utiliser qu'un seul service d'import (grosse simplification) adds 7ae11a6 Utilisation du nouveu service d'import de données dans les actions d'ui adds bd5e973 Suppression des anciens services et code d'import de données + ajout de nouveaux tests d'import adds dabf6f2 Debut de mise en place d'un export lors de l'import adds fa7d5ee Suppression du domaine de tout ce qui concerne les csv (on retrouve ça partie service) adds f3e7527 Optimisation des dépendances adds e8afecd Renommages, mise en place context d'import adds 7a14695 Renommages, mise en place context d'import (impacts dans les actions d'ui) adds 1419ef0 Ajout du répertoire temporaire dans la configuration adds 7c656ce Début d'implantation de l'export adds 93c294d Début de revue des tests pour intégrer les exports adds a7b1555 Les imports commons voyage passent \o/ adds 66bf442 Amélioration des tests d'import adds 69acea5 Utilisation des bons contrats adds 0f4984b Import Catches total sample works adds ce6c788 Add toString on some entities adds eb33334 Can collect imported sample data adds 36cf27f Remove units column from subsample import in import data adds 9058bd7 Add test import database with total sample inside it adds 6f20743 Sub sample import ok \o/ (See #8170) adds 1bb6729 Improve import data tests adds 4ecf78f Biometry sample import ok \o/ (See #8170) adds 3f18980 rename catches csv java classes adds 8f50973 rename commons csv java classes adds 7556b75 Operations import ok \o/ (See #8170) adds 7e4b605 Fix voyage commons bootstrap dbs adds c3a5fa4 Upgrade test import databases adds 34e6272 fix test results adds cb7b7bf Normalize test names + readd ITs :) adds e217345 Add more toString on entities adds 0b3c385 Add predicate to filter cell data adds 70be163 Fix i18n adds 7a80a3b Prise en compte de la nullité d'un résultat lors de l'export adds 8853358 Prise en compte de la nullité de la qualité d'un résultat lors de l'export adds 0be21ef Region import ok \o/ (See #8170) adds b83fd76 Can collect ids when creatin data cell adds 4c6cb1e Rename voyage region import data classes adds f0a5293 Pouvoir récupérer une espèces adds a50e450 Voyage result import ok \o/ (See #8170) adds 6dfb6f7 Add a ageCategory formatter (can be null) adds 701e59e Add method to get Category from his id adds f6d1265 Voyage map import ok \o/ (See #8170) adds 4a24404 Ajout colonne voyage sur import esdu echotype + fichier plus petit pour les tests adds cc92359 Correction de la clef du cache de category adds e745628 Ajout d'un cache AgeCategory et SizeCategory adds 67b20c4 Revue de l'api pour les imports de résults + début des imports de résultats esdu adds 54e7e16 Voyage result esdu import ok (except for some categories meaning) \o/ (See #8170) adds d149ffb Revue des l'import des résultats adds 068e186 Renommage classes d'imports de résultats d'esdu adds 8196c52 Ne pas importer deux fois les esdu manquantes adds 61958bc Plus le meme nombre de resultats importés sur les regions :() adds d94f407 Improve toString on entities adds c4142af Revue des bases acoustiques à importer adds 7ef2203 Voyage acoustic import ok \o/ (See #8170) adds 2ed230f Review tests again and again adds fcd8746 Suppression classe de teste inutile adds dc5b98f Add some check on ageCategory/sizeCategory meaning while importing them adds 00414e4 i18n adds d283902 Fix import files adds c491979 Nettoyage des tag values + migration topia 3.0 adds 5df9496 Amélioration du site technique adds 75be19e up to topia and eugene snapshots adds b71258e USe new Version package adds 19d87d6 move migration files adds 5eb7c02 Improve logs adds abdc624 Review importLog model (make imported ids depends on his ImportFile + add lineNumber of each imported id) adds 8a9e58a Update migration test databases adds 2ef8fdd Add nice methods on ImportFile adds e09f24d Review import data cinematic, creating import log before do the math in order to be able to reuse imported ids from database to build the checked import file adds 0262d40 Update remove data api, but tests are not ok since test databases are to be rebuild :( adds a67b9e3 Add voyage id to importlog when created adds 0d299f5 Add normal resources to be included adds c61b1a4 Improve code adds c58fcaa Fix created importLog for remove data tests adds 5a12aa1 Use ToPIA 3 configuration adds 02c9fae move H2Dialect (nothing to do in root package) adds 5191cb5 Improve migration design (use Reflections to get possible migration) + make it works with ToPIA 3 adds 85a38c9 Use truth adds 59fd870 Use new API adds 1d25f66 clean code and do some method rename adds f168873 Fix H2 dialect and fix also test databases adds 6349f59 Fix abstract dao ? adds 4097786 Reformat code adds 0991c68 Use ToPIA persistence context close adds da6bb29 Utilisation nuitonWeb 1.17 pour être compatible avec ToPIA 3 adds 034ec06 La version 3.902 permet de lancer enfin echobase avec topia 3 sur tout type de base adds cfe3cd7 Introduction au final d'une vrai entité pour conserver chaque id importer (sinon on ne peut pas assurer l'ordre (la map n'est pas suffisante) + revue de la migration adds a53094d Utilisation de cet nouvel API ImortFileId dans les imports et suppression d'import adds 35ec2cf Retour sur la version 3.901 adds a29df6b Retour sur develop (le modèle est stabilisé restera à effectuer les optimisations pour la génértion des fichiers d'export)" Merge branch 'feature/8170' into develop new f173e5d Finish modification for the model with tagValues and declaration new e2e9340 Rename comment to comments new b294a5f Add missing decorators new d4bd7c5 Create the migration new d361a1a Merge ImportfileId model + fix develop merge This update added new revisions after undoing existing revisions. That is to say, some revisions that were in the old version of the branch are not in the new version. This situation occurs when a user --force pushes a change and generates a repository containing something like this: * -- * -- B -- O -- O -- O (cdce953) \ N -- N -- N refs/heads/feature/#8171 (d361a1a) You should already have received notification emails for all of the O revisions, and so the following emails describe only the N revisions from the common base, B. Any revisions marked "omits" are not gone; other references still refer to them. Any revisions marked "discards" are gone forever. The 5 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit d361a1ab7b266a1c1ca5ea3400e4701b548f8016 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 10:01:02 2016 +0200 Merge ImportfileId model + fix develop merge commit d4bd7c5e71fa02549c99bda33f9979b0fb11e0a2 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 16:29:31 2016 +0200 Create the migration commit b294a5f271236eb476bd71c96f8cd7c8831014e2 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 14:33:05 2016 +0200 Add missing decorators commit e2e934017c462984e42413b631335c83823749bb Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 14:32:42 2016 +0200 Rename comment to comments commit f173e5de241436bbc4be848ec575745f7ec0cd8c Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 14:05:14 2016 +0200 Finish modification for the model with tagValues and declaration Summary of changes: echobase-domain/pom.xml | 65 +- .../echobase/config/EchoBaseConfiguration.java | 8 + .../config/EchoBaseConfigurationOption.java | 4 + .../fr/ifremer/echobase/csv/EchoBaseCsvUtil.java | 175 ---- .../fr/ifremer/echobase/entities/DriverType.java | 21 +- .../EchoBaseInternalTopiaApplicationContext.java | 72 ++ .../EchoBaseUserTopiaApplicationContext.java | 92 ++- .../echobase/entities/EchoBaseUserTopiaDao.java | 6 +- .../echobase/{ => entities}/FixedH2Dialect.java | 22 +- .../echobase/entities/ImportFileIdTopiaDao.java | 37 + .../echobase/entities/ImportFileTopiaDao.java | 17 + .../echobase/entities/ImportLogTopiaDao.java | 16 + .../ifremer/echobase/entities/data/CellImpl.java | 12 +- .../echobase/entities/data/CellTopiaDao.java | 6 - .../ifremer/echobase/entities/data/DataImpl.java | 18 + .../fr/ifremer/echobase/entities/data/Datas.java | 41 + .../echobase/entities/data/OperationImpl.java | 22 +- .../echobase/entities/data/SampleDataImpl.java | 18 + .../echobase/entities/data/SampleDatas.java | 19 + .../ifremer/echobase/entities/data/SampleImpl.java | 18 + .../echobase/entities/references/CellTypeImpl.java | 15 +- .../entities/references/DataMetadataImpl.java | 13 +- .../echobase/entities/references/GearImpl.java | 17 + .../entities/references/SampleDataTypeImpl.java | 17 +- .../entities/references/SampleTypeImpl.java | 10 + .../echobase/persistence/EchoBaseEntityHelper.java | 100 +-- .../EchobaseTopiaApplicationContexts.java | 233 ------ .../EchoBaseMigrationCallBackResolver.java | 63 +- .../MigrationCallBackForVersionSupport.java | 75 ++ .../migration/MigrationCallbackSupport.java | 24 + ... InternalDbMigrationCallBackForVersion2_2.java} | 25 +- ...ernalDbMigrationCallBackForVersionSupport.java} | 25 +- .../InternalDbMigrationCallback.java} | 18 +- ...> WorkingDbMigrationCallBackForVersion2_2.java} | 8 +- ...WorkingDbMigrationCallBackForVersion2_5_1.java} | 10 +- ...> WorkingDbMigrationCallBackForVersion2_6.java} | 16 +- ...WorkingDbMigrationCallBackForVersion2_6_1.java} | 12 +- ...WorkingDbMigrationCallBackForVersion2_7_2.java} | 12 +- ...WorkingDbMigrationCallBackForVersion3_900.java} | 36 +- .../WorkingDbMigrationCallBackForVersion3_901.java | 38 + ...rkingDbMigrationCallBackForVersionSupport.java} | 62 +- ...l.java => WorkingDbMigrationCallbackForH2.java} | 14 +- ...> WorkingDbMigrationCallbackForPostgresql.java} | 14 +- ...igration.internalDb.MigrationCallBackForVersion | 1 - ...migration.workingDb.MigrationCallBackForVersion | 5 - .../main/resources/echobase-internaldb.properties | 41 - .../main/resources/echobase-workingdb.properties | 41 - .../i18n/echobase-domain_en_GB.properties | 1 + .../i18n/echobase-domain_fr_FR.properties | 1 + .../workingDb/3.901-0-clean-importLog-table.sql | 2 + .../migration/workingDb/h2/3.900-0-fix-types.sql | 56 ++ .../h2/3.901-1-upgrade-importFile-table.sql | 10 + .../{ => pg}/2.5.1-0-postgis-structure.sql | 0 .../workingDb/{ => pg}/2.5.1-1-postgis-view.sql | 0 .../workingDb/{ => pg}/2.6-0-postgis-view.sql | 0 .../{ => pg}/2.6.1-0-postgis-structure.sql | 0 .../workingDb/{ => pg}/2.7.2-0-postgis-view.sql | 0 .../migration/workingDb/pg/3.900-0-fix-types.sql | 56 ++ .../3.901-1-upgrade-importFile-table.sql} | 13 +- .../src/main/xmi/echobase-internal.properties | 5 +- echobase-domain/src/main/xmi/echobase.properties | 20 +- echobase-domain/src/main/xmi/echobase.zargo | Bin 97541 -> 98247 bytes .../echobase/persistence/EchoBaseDbMetaTest.java | 2 +- echobase-services/pom.xml | 2 +- .../echobase/services/csv/BatchCsvExport.java | 100 +++ .../fr/ifremer/echobase/services/csv/CellAble.java | 22 + .../echobase/services/csv/CellValueFormatter.java | 115 +++ .../echobase/services}/csv/CellValueParser.java | 29 +- .../echobase/services}/csv/ChainValueParser.java | 13 +- .../echobase/services/csv/EchoBaseCsvUtil.java | 347 ++++++++ .../ifremer/echobase/services/csv/ResultAble.java | 23 + .../services/csv/ResultValueFormatter.java | 37 +- .../echobase/services/csv/ResultValueGetter.java | 29 + .../echobase/services}/csv/ResultValueParser.java | 9 +- .../echobase/services/csv/ResultValueSetter.java | 17 + .../services/csv/ValueFormatterByFunction.java | 24 + .../echobase/services/service/DbEditorService.java | 2 +- .../services/service/UserDbPersistenceService.java | 258 ++++-- .../EmbeddedApplicationService.java | 5 +- .../service/exportCoser/IndicatorExportModel.java | 2 +- .../exportCoser/RawDataCatchExportModel.java | 2 +- .../exportCoser/RawDataSizeExportModel.java | 4 +- .../exportCoser/RawDataStrataExportModel.java | 2 +- .../service/exportCoser/SpeciesExportModel.java | 2 +- .../service/exportquery/ExportQueryCsvModel.java | 2 +- .../importdata/AbstractImportDataService.java | 452 ---------- .../service/importdata/AcousticImportResult.java | 57 -- .../service/importdata/AcousticImportService.java | 778 ------------------ .../service/importdata/AgeCategoryCache.java | 53 ++ .../service/importdata/CatchesImportService.java | 535 ------------ .../service/importdata/CommonAllImportService.java | 67 -- .../importdata/CommonTransectImportService.java | 158 ---- .../importdata/CommonTransitImportService.java | 123 --- .../importdata/CommonVoyageImportService.java | 133 --- ...ion.java => DataMetadataNotFoundException.java} | 13 +- ...ception.java => DuplicatedSampleException.java} | 16 +- .../importdata/EchoBaseCsvFileImportResult.java | 60 -- ...=> ElementaryCellWithoutDepthEndException.java} | 13 +- ...ception.java => EsduCellNotFoundException.java} | 15 +- ...va => EsduCellWithDepthEndFilledException.java} | 13 +- .../service/importdata/ImportDataFileResult.java | 164 ++++ .../service/importdata/ImportDataResult.java | 45 + .../service/importdata/ImportDataService.java | 382 +++++++++ .../service/importdata/ImportException.java | 4 +- .../MismatchAgeCategoryMeaningException.java | 19 + .../MismatchSizeCategoryMeaningException.java | 19 + ...ommonImportService.java => MissionService.java} | 53 +- ...va => MoreThanOnceVoyageToImportException.java} | 12 +- ...ava => NoTransitFoundBetweenDateException.java} | 14 +- ...ception.java => NoVoyageToImportException.java} | 12 +- .../service/importdata/OperationImportService.java | 284 ------- .../service/importdata/ResultCategoryCache.java | 93 +++ .../importdata/ResultsEsduCellImportService.java | 500 ----------- .../service/importdata/ResultsImportService.java | 131 --- .../ResultsMapFishCellImportService.java | 231 ------ .../ResultsMapOtherCellImportService.java | 204 ----- .../importdata/ResultsRegionCellImportService.java | 315 ------- .../ResultsVoyageImportAlreadyExistException.java | 8 +- .../importdata/ResultsVoyageImportService.java | 345 -------- .../service/importdata/SizeCategoryCache.java | 53 ++ .../service/importdata/SpeciesCategoryCache.java | 82 ++ ...ception.java => TransectNotFoundException.java} | 15 +- ...xception.java => TransitNotFoundException.java} | 14 +- .../actions/ImportDataActionSupport.java | 441 ++++++++++ .../actions/VoyageAcousticsImportAction.java | 915 +++++++++++++++++++++ .../VoyageAcousticsImportDataActionSupport.java | 18 + .../VoyageCatchesBiometrySampleImportAction.java | 157 ++++ .../VoyageCatchesImportDataActionSupport.java | 61 ++ .../VoyageCatchesSubSampleImportAction.java | 338 ++++++++ .../VoyageCatchesTotalSampleImportAction.java | 229 ++++++ .../VoyageCommonsImportDataActionSupport.java | 18 + .../actions/VoyageCommonsTransectImportAction.java | 127 +++ .../actions/VoyageCommonsTransitImportAction.java | 110 +++ .../actions/VoyageCommonsVoyageImportAction.java | 122 +++ .../VoyageOperationsGearMetadataImportAction.java | 115 +++ .../VoyageOperationsImportDataActionSupport.java | 18 + .../VoyageOperationsOperationImportAction.java | 121 +++ ...ageOperationsOperationMetadataImportAction.java | 114 +++ .../VoyageResultsCellImportDataActionSupport.java | 142 ++++ ...EchotypeAndSpeciesCategoryCellImportAction.java | 51 ++ ...oyageResultsEsduByEchotypeCellImportAction.java | 47 ++ ...sEsduSpeciesAndAgeCategoryCellImportAction.java | 59 ++ ...EsduSpeciesAndSizeCategoryCellImportAction.java | 63 ++ .../VoyageResultsImportDataActionSupport.java | 69 ++ .../VoyageResultsMapFishCellImportAction.java | 231 ++++++ .../VoyageResultsMapOtherCellImportAction.java | 199 +++++ ...VoyageResultsRegionAssociationImportAction.java | 105 +++ .../actions/VoyageResultsRegionImportAction.java | 167 ++++ .../VoyageResultsRegionResultsImportAction.java | 189 +++++ .../VoyageResultsVoyageEchotypeImportAction.java | 144 ++++ ...oyageResultsVoyageLengthAgeKeyImportAction.java | 96 +++ ...geResultsVoyageLengthWeightKeyImportAction.java | 105 +++ .../ImportDataConfigurationSupport.java} | 33 +- .../VoyageAcousticsImportConfiguration.java} | 31 +- .../VoyageCatchesImportConfiguration.java} | 21 +- .../VoyageCommonsImportConfiguration.java} | 38 +- .../VoyageImportDataConfigurationSupport.java} | 18 +- .../VoyageOperationsImportConfiguration.java} | 19 +- .../VoyageResultsImportConfiguration.java} | 95 +-- .../contexts/ImportDataContextSupport.java | 270 ++++++ .../contexts/VoyageAcousticsImportDataContext.java | 21 + .../contexts/VoyageCatchesImportDataContext.java | 122 +++ .../contexts/VoyageCommonsImportDataContext.java | 21 + .../contexts/VoyageImportDataContextSupport.java | 121 +++ .../VoyageOperationsImportDataContext.java | 21 + .../contexts/VoyageResultsImportDataContext.java | 214 +++++ .../importdata/csv/AcousticImportModel.java | 136 --- .../importdata/csv/BiometrySampleImportModel.java | 60 -- .../csv/EchoBaseImportExportModelSupport.java | 51 ++ .../importdata/csv/EchotypeImportModel.java | 58 -- ...ultByEchotypeAndSpeciesCategoryImportModel.java | 88 -- .../csv/EsduResultByEchotypeImportModel.java | 79 -- ...duResultBySpeciesAndAgeCategoryImportModel.java | 83 -- ...uResultBySpeciesAndSizeCategoryImportModel.java | 83 -- .../csv/GearMetadataValueImportModel.java | 62 -- .../importdata/csv/LengthAgeKeyImportModel.java | 60 -- .../importdata/csv/LengthWeightKeyImportModel.java | 60 -- .../service/importdata/csv/MapCellImportModel.java | 125 --- .../importdata/csv/OperationImportModel.java | 65 -- .../csv/OperationMetadataValueImportModel.java | 57 -- .../csv/RegionCellAssociationImportModel.java | 53 -- .../importdata/csv/RegionCellImportModel.java | 58 -- .../csv/RegionCellResultImportModel.java | 84 -- .../importdata/csv/SubSampleImportModel.java | 70 -- .../importdata/csv/TotalSampleImportModel.java | 63 -- .../importdata/csv/TransectImportModel.java | 74 -- .../service/importdata/csv/TransitImportModel.java | 53 -- .../csv/VoyageAcousticImportExportModel.java | 223 +++++ ...ImportRow.java => VoyageAcousticImportRow.java} | 93 ++- ...yageCatchesBiometrySampleImportExportModel.java | 71 ++ ...a => VoyageCatchesBiometrySampleImportRow.java} | 44 +- .../VoyageCatchesSubSampleImportExportModel.java | 87 ++ ...w.java => VoyageCatchesSubSampleImportRow.java} | 46 +- .../VoyageCatchesTotalSampleImportExportModel.java | 78 ++ ...java => VoyageCatchesTotalSampleImportRow.java} | 39 +- .../VoyageCommonsTransectImportExportModel.java | 92 +++ ...ow.java => VoyageCommonsTransectImportRow.java} | 120 ++- .../csv/VoyageCommonsTransitImportExportModel.java | 70 ++ ...Row.java => VoyageCommonsTransitImportRow.java} | 50 +- .../csv/VoyageCommonsVoyageImportExportModel.java | 68 ++ .../service/importdata/csv/VoyageImportModel.java | 49 -- ...erationsGearMetadataValueImportExportModel.java | 72 ++ ...oyageOperationsGearMetadataValueImportRow.java} | 36 +- ...VoyageOperationsOperationImportExportModel.java | 84 ++ ...ava => VoyageOperationsOperationImportRow.java} | 67 +- ...onsOperationMetadataValueImportExportModel.java | 68 ++ ...OperationsOperationMetadataValueImportRow.java} | 40 +- ...chotypeAndSpeciesCategoryImportExportModel.java | 93 +++ ...EsduByEchotypeAndSpeciesCategoryImportRow.java} | 73 +- ...yageResultsEsduByEchotypeImportExportModel.java | 83 ++ ...a => VoyageResultsEsduByEchotypeImportRow.java} | 53 +- ...duBySpeciesAndAgeCategoryImportExportModel.java | 91 ++ ...sultsEsduBySpeciesAndAgeCategoryImportRow.java} | 81 +- ...uBySpeciesAndSizeCategoryImportExportModel.java | 93 +++ ...ultsEsduBySpeciesAndSizeCategoryImportRow.java} | 81 +- .../VoyageResultsMapFishCellImportExportModel.java | 114 +++ ...java => VoyageResultsMapFishCellImportRow.java} | 127 +-- ...VoyageResultsMapOtherCellImportExportModel.java | 99 +++ ...ava => VoyageResultsMapOtherCellImportRow.java} | 131 ++- ...ultsRegionCellAssociationImportExportModel.java | 68 ++ ...yageResultsRegionCellAssociationImportRow.java} | 32 +- .../VoyageResultsRegionCellImportExportModel.java | 71 ++ ....java => VoyageResultsRegionCellImportRow.java} | 56 +- ...geResultsRegionCellResultImportExportModel.java | 93 +++ ...=> VoyageResultsRegionCellResultImportRow.java} | 79 +- ...yageResultsVoyageEchotypeImportExportModel.java | 73 ++ ...a => VoyageResultsVoyageEchotypeImportRow.java} | 44 +- ...ResultsVoyageLengthAgeKeyImportExportModel.java | 76 ++ ... VoyageResultsVoyageLengthAgeKeyImportRow.java} | 46 +- ...ultsVoyageLengthWeightKeyImportExportModel.java | 77 ++ ...yageResultsVoyageLengthWeightKeyImportRow.java} | 42 +- .../importdb/strategy/FreeImportDbStrategy.java | 13 +- .../service/removedata/RemoveDataService.java | 24 +- .../strategy/AbstractRemoveDataStrategy.java | 34 +- .../strategy/AcousticRemoveDataStrategy.java | 2 +- .../strategy/CatchesRemoveDataStrategy.java | 2 +- .../strategy/CommonAllRemoveDataStrategy.java | 2 +- .../strategy/CommonTransectRemoveDataStrategy.java | 2 +- .../strategy/CommonTransitRemoveDataStrategy.java | 2 +- .../strategy/CommonVoyageRemoveDataStrategy.java | 2 +- .../strategy/LegacyVoyageRemoveDataStrategy.java | 2 +- .../strategy/OperationRemoveDataStrategy.java | 2 +- .../strategy/ResultEsduRemoveDataStrategy.java | 2 +- .../strategy/ResultMapFishRemoveDataStrategy.java | 2 +- .../strategy/ResultMapOtherRemoveDataStrategy.java | 2 +- .../strategy/ResultRegionRemoveDataStrategy.java | 2 +- .../strategy/ResultVoyageRemoveDataStrategy.java | 2 +- .../i18n/echobase-services_en_GB.properties | 5 + .../i18n/echobase-services_fr_FR.properties | 5 + .../echobase/services/EchoBaseServiceFixtures.java | 30 +- .../services/EchoBaseTestServiceSupport.java | 169 +--- .../services/FakeEchoBaseServiceContext.java | 73 +- .../fr/ifremer/echobase/services/FixCellsIT.java | 23 +- .../echobase/services/ImportDataFixtures.java | 132 +++ .../services/MigrateImportDataDatabasesIT.java | 129 +++ .../EmbeddedApplicationServiceIT.java | 4 +- .../exportCoser/ExportCoserServiceTest.java | 3 +- .../service/exportdb/ExportDbServiceTest.java | 4 +- .../importdata/AbstractImportDataServiceIT.java | 236 +++--- .../service/importdata/CatchesImportServiceIT.java | 160 ---- .../importdata/CommonAllImportServiceIT.java | 92 --- .../importdata/CommonTransectImportServiceIT.java | 82 -- .../importdata/CommonTransitImportServiceIT.java | 87 -- .../importdata/CommonVoyageImportServiceIT.java | 83 -- .../importdata/OperationImportServiceIT.java | 83 -- .../importdata/ResultsEsduCellImportServiceIT.java | 191 ----- .../ResultsMapFishCellImportServiceIT.java | 80 -- .../ResultsMapOtherCellImportServiceIT.java | 79 -- .../ResultsRegionCellImportServiceIT.java | 92 --- .../importdata/ResultsVoyageImportServiceIT.java | 162 ---- ...eIT.java => VoyageAcousticImportServiceIT.java} | 73 +- .../VoyageCatchesAllImportServiceIT.java | 94 +++ .../VoyageCatchesImportServiceITSupport.java | 55 ++ ...geCatchesOnlyBiometrySampleImportServiceIT.java | 67 ++ .../VoyageCatchesOnlySubSampleImportServiceIT.java | 67 ++ ...oyageCatchesOnlyTotalSampleImportServiceIT.java | 67 ++ .../VoyageCommonsAllImportServiceIT.java | 98 +++ .../VoyageCommonsImportServiceITSupport.java | 53 ++ .../VoyageCommonsOnlyTransectImportServiceIT.java | 93 +++ .../VoyageCommonsOnlyTransitImportServiceIT.java | 93 +++ .../VoyageCommonsOnlyVoyageImportServiceIT.java | 82 ++ .../importdata/VoyageOperationImportServiceIT.java | 92 +++ ...yEchotypeAndSpeciesCategoryImportServiceIT.java | 84 ++ ...ResultsEsduCellOnlyEchotypeImportServiceIT.java | 81 ++ ...llOnlySpeciesAndAgeCategoryImportServiceIT.java | 91 ++ ...lOnlySpeciesAndSizeCategoryImportServiceIT.java | 91 ++ .../VoyageResultsImportServiceITSupport.java | 51 ++ .../VoyageResultsMapFishCellImportServiceIT.java | 77 ++ .../VoyageResultsMapOtherCellImportServiceIT.java | 75 ++ .../VoyageResultsRegionCellImportServiceIT.java | 103 +++ .../VoyageResultsVoyageImportServiceIT.java | 88 ++ ...geResultsVoyageOnlyEchotypeImportServiceIT.java | 68 ++ ...sultsVoyageOnlyLengthAgeKeyImportServiceIT.java | 68 ++ ...tsVoyageOnlyLengthWeightKeyImportServiceIT.java | 68 ++ .../removedata/AbstractRemoveDataServiceTest.java | 112 ++- .../resources/import-data/acoustic/movies.csv.gz | Bin 596169 -> 596169 bytes .../import-data/acoustic/movies_small.csv.gz | Bin 0 -> 6141 bytes .../resources/import-data/catches/subsample.csv.gz | Bin 931 -> 920 bytes .../import-data/catches/subsample_all.csv.gz | Bin 23572 -> 22400 bytes .../echobase-catches-and-voyage-result.h2.db.gz | Bin 705722 -> 632318 bytes .../import-data/echobase-catches.h2.db.gz | Bin 662677 -> 594894 bytes .../import-data/echobase-commonData.h2.db.gz | Bin 178638 -> 183714 bytes .../resources/import-data/echobase-nodata.h2.db.gz | Bin 129028 -> 136848 bytes .../echobase-operation-total-samples.h2.db.gz | Bin 0 -> 602363 bytes .../import-data/echobase-operation.h2.db.gz | Bin 324421 -> 328618 bytes .../import-data/result/esdu/byEchotype.csv.gz | Bin 73537 -> 73195 bytes .../esdu/byEchotypeAndSpeciesCategory.csv.gz | Bin 547091 -> 547121 bytes .../esdu/byEchotypeAndSpeciesCategory_small.csv.gz | Bin 0 -> 2042 bytes .../result/esdu/byEchotype_small.csv.gz | Bin 0 -> 2802 bytes .../result/esdu/bySpeciesAndAgeCategory.csv.gz | Bin 141033 -> 141214 bytes .../esdu/bySpeciesAndAgeCategory_small.csv.gz | Bin 0 -> 2379 bytes .../result/esdu/bySpeciesAndSizeCategory.csv.gz | Bin 707226 -> 709007 bytes .../esdu/bySpeciesAndSizeCategory_small.csv.gz | Bin 0 -> 2544 bytes .../result/region/regionAssociations_small.csv.gz | Bin 0 -> 296 bytes echobase-ui/pom.xml | 15 +- .../echobase/ui/EchoBaseApplicationContext.java | 9 +- .../fr/ifremer/echobase/ui/EchoBaseSession.java | 5 +- .../echobase/ui/actions/dbeditor/GetEntities.java | 3 +- .../importData/AbstractConfigureImport.java | 4 +- .../actions/importData/AbstractLaunchImport.java | 19 +- .../importData/ConfigureAcousticImport.java | 12 +- .../actions/importData/ConfigureCatchesImport.java | 12 +- .../actions/importData/ConfigureCommonImport.java | 20 +- .../importData/ConfigureOperationImport.java | 12 +- .../actions/importData/ConfigureResultsImport.java | 12 +- .../ui/actions/importData/CreateMission.java | 6 +- .../importData/GetDataProcessingsForVoyage.java | 5 +- .../actions/importData/LaunchAcousticImport.java | 15 +- .../ui/actions/importData/LaunchCatchesImport.java | 15 +- .../ui/actions/importData/LaunchCommonImport.java | 15 +- .../actions/importData/LaunchOperationImport.java | 15 +- .../ui/actions/importData/LaunchResultsImport.java | 16 +- .../echobase/ui/actions/workingDb/Connect.java | 4 +- .../ui/actions/workingDb/CreatePostgresDb.java | 10 +- pom.xml | 34 +- src/site/site_fr.xml | 6 + 336 files changed, 13962 insertions(+), 9236 deletions(-) delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/csv/EchoBaseCsvUtil.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/EchoBaseInternalTopiaApplicationContext.java rename echobase-domain/src/main/java/fr/ifremer/echobase/{ => entities}/FixedH2Dialect.java (75%) create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileIdTopiaDao.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileTopiaDao.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportLogTopiaDao.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/DataImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/Datas.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/SampleDataImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/SampleDatas.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/SampleImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/references/GearImpl.java delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/EchobaseTopiaApplicationContexts.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/MigrationCallBackForVersionSupport.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/MigrationCallbackSupport.java rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/{MigrationCallBackForVersion2_2.java => InternalDbMigrationCallBackForVersion2_2.java} (95%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/{MigrationCallBackForVersion.java => InternalDbMigrationCallBackForVersionSupport.java} (63%) copy echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/{workingDb/MigrationCallBackForVersionPostgresql.java => internalDb/InternalDbMigrationCallback.java} (65%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_2.java => WorkingDbMigrationCallBackForVersion2_2.java} (91%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_5_1.java => WorkingDbMigrationCallBackForVersion2_5_1.java} (84%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_6.java => WorkingDbMigrationCallBackForVersion2_6.java} (95%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_6_1.java => WorkingDbMigrationCallBackForVersion2_6_1.java} (87%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_7_2.java => WorkingDbMigrationCallBackForVersion2_7_2.java} (89%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallback.java => WorkingDbMigrationCallBackForVersion3_900.java} (50%) create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/WorkingDbMigrationCallBackForVersion3_901.java rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion.java => WorkingDbMigrationCallBackForVersionSupport.java} (58%) copy echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersionPostgresql.java => WorkingDbMigrationCallbackForH2.java} (69%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersionPostgresql.java => WorkingDbMigrationCallbackForPostgresql.java} (68%) delete mode 100644 echobase-domain/src/main/resources/META-INF/services/fr.ifremer.echobase.persistence.migration.internalDb.MigrationCallBackForVersion delete mode 100644 echobase-domain/src/main/resources/META-INF/services/fr.ifremer.echobase.persistence.migration.workingDb.MigrationCallBackForVersion delete mode 100644 echobase-domain/src/main/resources/echobase-internaldb.properties delete mode 100644 echobase-domain/src/main/resources/echobase-workingdb.properties create mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.901-0-clean-importLog-table.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.900-0-fix-types.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.901-1-upgrade-importFile-table.sql rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.5.1-0-postgis-structure.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.5.1-1-postgis-view.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.6-0-postgis-view.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.6.1-0-postgis-structure.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.7.2-0-postgis-view.sql (100%) create mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.900-0-fix-types.sql copy echobase-domain/src/main/resources/migration/workingDb/{h2/2.7.2-1-add-importFile-entity.sql => pg/3.901-1-upgrade-importFile-table.sql} (50%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/BatchCsvExport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/CellAble.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/CellValueFormatter.java rename {echobase-domain/src/main/java/fr/ifremer/echobase => echobase-services/src/main/java/fr/ifremer/echobase/services}/csv/CellValueParser.java (76%) rename {echobase-domain/src/main/java/fr/ifremer/echobase => echobase-services/src/main/java/fr/ifremer/echobase/services}/csv/ChainValueParser.java (86%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/EchoBaseCsvUtil.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ResultAble.java rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/MigrationCallback.java => echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ResultValueFormatter.java (50%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ResultValueGetter.java rename {echobase-domain/src/main/java/fr/ifremer/echobase => echobase-services/src/main/java/fr/ifremer/echobase/services}/csv/ResultValueParser.java (90%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ResultValueSetter.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ValueFormatterByFunction.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/AbstractImportDataService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/AcousticImportResult.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/AcousticImportService.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/AgeCategoryCache.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CatchesImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CommonAllImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CommonTransectImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CommonTransitImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CommonVoyageImportService.java copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => DataMetadataNotFoundException.java} (70%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => DuplicatedSampleException.java} (57%) delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/EchoBaseCsvFileImportResult.java copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => ElementaryCellWithoutDepthEndException.java} (66%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => EsduCellNotFoundException.java} (61%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => EsduCellWithDepthEndFilledException.java} (67%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ImportDataFileResult.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ImportDataResult.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ImportDataService.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/MismatchAgeCategoryMeaningException.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/MismatchSizeCategoryMeaningException.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{CommonImportService.java => MissionService.java} (55%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => MoreThanOnceVoyageToImportException.java} (74%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => NoTransitFoundBetweenDateException.java} (65%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => NoVoyageToImportException.java} (76%) delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/OperationImportService.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultCategoryCache.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsEsduCellImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsMapFishCellImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsMapOtherCellImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsRegionCellImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsVoyageImportService.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/SizeCategoryCache.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/SpeciesCategoryCache.java copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => TransectNotFoundException.java} (64%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => TransitNotFoundException.java} (68%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/ImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageAcousticsImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageAcousticsImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCatchesBiometrySampleImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCatchesImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCatchesSubSampleImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCatchesTotalSampleImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCommonsImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCommonsTransectImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCommonsTransitImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCommonsVoyageImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageOperationsGearMetadataImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageOperationsImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageOperationsOperationImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageOperationsOperationMetadataImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsCellImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsEsduByEchotypeAndSpeciesCategoryCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsEsduByEchotypeCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsEsduSpeciesAndAgeCategoryCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsEsduSpeciesAndSizeCategoryCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsMapFishCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsMapOtherCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsRegionAssociationImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsRegionImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsRegionResultsImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsVoyageEchotypeImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsVoyageLengthAgeKeyImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsVoyageLengthWeightKeyImportAction.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{AbstractImportConfiguration.java => configurations/ImportDataConfigurationSupport.java} (70%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{AcousticImportConfiguration.java => configurations/VoyageAcousticsImportConfiguration.java} (95%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{CatchesImportConfiguration.java => configurations/VoyageCatchesImportConfiguration.java} (74%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{CommonImportConfiguration.java => configurations/VoyageCommonsImportConfiguration.java} (89%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/{exportquery/ExportQueryNameAlreadyExistException.java => importdata/configurations/VoyageImportDataConfigurationSupport.java} (66%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{OperationImportConfiguration.java => configurations/VoyageOperationsImportConfiguration.java} (71%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsImportConfiguration.java => configurations/VoyageResultsImportConfiguration.java} (64%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/ImportDataContextSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageAcousticsImportDataContext.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageCatchesImportDataContext.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageCommonsImportDataContext.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageImportDataContextSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageOperationsImportDataContext.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageResultsImportDataContext.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/AcousticImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/BiometrySampleImportModel.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EchoBaseImportExportModelSupport.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EchotypeImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EsduResultByEchotypeAndSpeciesCategoryImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EsduResultByEchotypeImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EsduResultBySpeciesAndAgeCategoryImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EsduResultBySpeciesAndSizeCategoryImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/GearMetadataValueImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/LengthAgeKeyImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/LengthWeightKeyImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/MapCellImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/OperationImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/OperationMetadataValueImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/RegionCellAssociationImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/RegionCellImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/RegionCellResultImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/SubSampleImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/TotalSampleImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/TransectImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/TransitImportModel.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageAcousticImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{AcousticImportRow.java => VoyageAcousticImportRow.java} (70%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCatchesBiometrySampleImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{BiometrySampleImportRow.java => VoyageCatchesBiometrySampleImportRow.java} (69%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCatchesSubSampleImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{SubSampleImportRow.java => VoyageCatchesSubSampleImportRow.java} (80%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCatchesTotalSampleImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{TotalSampleImportRow.java => VoyageCatchesTotalSampleImportRow.java} (77%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCommonsTransectImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{TransectImportRow.java => VoyageCommonsTransectImportRow.java} (54%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCommonsTransitImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{TransitImportRow.java => VoyageCommonsTransitImportRow.java} (67%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCommonsVoyageImportExportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageImportModel.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageOperationsGearMetadataValueImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{GearMetadataValueImportRow.java => VoyageOperationsGearMetadataValueImportRow.java} (65%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageOperationsOperationImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{OperationImportRow.java => VoyageOperationsOperationImportRow.java} (64%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageOperationsOperationMetadataValueImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{OperationMetadataValueImportRow.java => VoyageOperationsOperationMetadataValueImportRow.java} (64%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsEsduByEchotypeAndSpeciesCategoryImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{RegionCellResultImportRow.java => VoyageResultsEsduByEchotypeAndSpeciesCategoryImportRow.java} (72%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsEsduByEchotypeImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EsduResultByEchotypeImportRow.java => VoyageResultsEsduByEchotypeImportRow.java} (69%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsEsduBySpeciesAndAgeCategoryImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EsduResultBySpeciesAndAgeCategoryImportRow.java => VoyageResultsEsduBySpeciesAndAgeCategoryImportRow.java} (68%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsEsduBySpeciesAndSizeCategoryImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EsduResultBySpeciesAndSizeCategoryImportRow.java => VoyageResultsEsduBySpeciesAndSizeCategoryImportRow.java} (68%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsMapFishCellImportExportModel.java copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{MapCellImportRow.java => VoyageResultsMapFishCellImportRow.java} (81%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsMapOtherCellImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{MapCellImportRow.java => VoyageResultsMapOtherCellImportRow.java} (74%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsRegionCellAssociationImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{RegionCellAssociationImportRow.java => VoyageResultsRegionCellAssociationImportRow.java} (75%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsRegionCellImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{RegionCellImportRow.java => VoyageResultsRegionCellImportRow.java} (70%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsRegionCellResultImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EsduResultByEchotypeAndSpeciesCategoryImportRow.java => VoyageResultsRegionCellResultImportRow.java} (64%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsVoyageEchotypeImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EchotypeImportRow.java => VoyageResultsVoyageEchotypeImportRow.java} (63%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsVoyageLengthAgeKeyImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{LengthAgeKeyImportRow.java => VoyageResultsVoyageLengthAgeKeyImportRow.java} (65%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsVoyageLengthWeightKeyImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{LengthWeightKeyImportRow.java => VoyageResultsVoyageLengthWeightKeyImportRow.java} (68%) create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/ImportDataFixtures.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/MigrateImportDataDatabasesIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CatchesImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CommonAllImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CommonTransectImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CommonTransitImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CommonVoyageImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/OperationImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsEsduCellImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsMapFishCellImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsMapOtherCellImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsRegionCellImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsVoyageImportServiceIT.java rename echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/{AcousticImportServiceIT.java => VoyageAcousticImportServiceIT.java} (54%) create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesAllImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesImportServiceITSupport.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesOnlyBiometrySampleImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesOnlySubSampleImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesOnlyTotalSampleImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsAllImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsImportServiceITSupport.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsOnlyTransectImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsOnlyTransitImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsOnlyVoyageImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageOperationImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsEsduCellOnlyEchotypeAndSpeciesCategoryImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsEsduCellOnlyEchotypeImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsEsduCellOnlySpeciesAndAgeCategoryImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsEsduCellOnlySpeciesAndSizeCategoryImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsImportServiceITSupport.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsMapFishCellImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsMapOtherCellImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsRegionCellImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsVoyageImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsVoyageOnlyEchotypeImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsVoyageOnlyLengthAgeKeyImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsVoyageOnlyLengthWeightKeyImportServiceIT.java create mode 100644 echobase-services/src/test/resources/import-data/acoustic/movies_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/echobase-operation-total-samples.h2.db.gz create mode 100644 echobase-services/src/test/resources/import-data/result/esdu/byEchotypeAndSpeciesCategory_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/result/esdu/byEchotype_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/result/esdu/bySpeciesAndAgeCategory_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/result/esdu/bySpeciesAndSizeCategory_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/result/region/regionAssociations_small.csv.gz -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 5

branch develop updated (2fda67c -> a29df6b)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch develop in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 2fda67c on repasse sur develop pour avancer même si le point n'est pas complètement traité :(. Merge branch 'feature/8089' into develop adds 9d7bc43 Revue des import (utilisation java 7 API + reformat code) adds 180efed Ajout d'un checkFile pour chaque importFile adds 4bee302 Mise en place d'une nouvelle API d'action d'import (pour traiter chaque import de fichier unitairement et non plus via des méthodes de services), du coup on ne va plus utiliser qu'un seul service d'import (grosse simplification) adds 7ae11a6 Utilisation du nouveu service d'import de données dans les actions d'ui adds bd5e973 Suppression des anciens services et code d'import de données + ajout de nouveaux tests d'import adds dabf6f2 Debut de mise en place d'un export lors de l'import adds fa7d5ee Suppression du domaine de tout ce qui concerne les csv (on retrouve ça partie service) adds f3e7527 Optimisation des dépendances adds e8afecd Renommages, mise en place context d'import adds 7a14695 Renommages, mise en place context d'import (impacts dans les actions d'ui) adds 1419ef0 Ajout du répertoire temporaire dans la configuration adds 7c656ce Début d'implantation de l'export adds 93c294d Début de revue des tests pour intégrer les exports adds a7b1555 Les imports commons voyage passent \o/ adds 66bf442 Amélioration des tests d'import adds 69acea5 Utilisation des bons contrats adds 0f4984b Import Catches total sample works adds ce6c788 Add toString on some entities adds eb33334 Can collect imported sample data adds 36cf27f Remove units column from subsample import in import data adds 9058bd7 Add test import database with total sample inside it adds 6f20743 Sub sample import ok \o/ (See #8170) adds 1bb6729 Improve import data tests adds 4ecf78f Biometry sample import ok \o/ (See #8170) adds 3f18980 rename catches csv java classes adds 8f50973 rename commons csv java classes adds 7556b75 Operations import ok \o/ (See #8170) adds 7e4b605 Fix voyage commons bootstrap dbs adds c3a5fa4 Upgrade test import databases adds 34e6272 fix test results adds cb7b7bf Normalize test names + readd ITs :) adds e217345 Add more toString on entities adds 0b3c385 Add predicate to filter cell data adds 70be163 Fix i18n adds 7a80a3b Prise en compte de la nullité d'un résultat lors de l'export adds 8853358 Prise en compte de la nullité de la qualité d'un résultat lors de l'export adds 0be21ef Region import ok \o/ (See #8170) adds b83fd76 Can collect ids when creatin data cell adds 4c6cb1e Rename voyage region import data classes adds f0a5293 Pouvoir récupérer une espèces adds a50e450 Voyage result import ok \o/ (See #8170) adds 6dfb6f7 Add a ageCategory formatter (can be null) adds 701e59e Add method to get Category from his id adds f6d1265 Voyage map import ok \o/ (See #8170) adds 4a24404 Ajout colonne voyage sur import esdu echotype + fichier plus petit pour les tests adds cc92359 Correction de la clef du cache de category adds e745628 Ajout d'un cache AgeCategory et SizeCategory adds 67b20c4 Revue de l'api pour les imports de résults + début des imports de résultats esdu adds 54e7e16 Voyage result esdu import ok (except for some categories meaning) \o/ (See #8170) adds d149ffb Revue des l'import des résultats adds 068e186 Renommage classes d'imports de résultats d'esdu adds 8196c52 Ne pas importer deux fois les esdu manquantes adds 61958bc Plus le meme nombre de resultats importés sur les regions :() adds d94f407 Improve toString on entities adds c4142af Revue des bases acoustiques à importer adds 7ef2203 Voyage acoustic import ok \o/ (See #8170) adds 2ed230f Review tests again and again adds fcd8746 Suppression classe de teste inutile adds dc5b98f Add some check on ageCategory/sizeCategory meaning while importing them adds 00414e4 i18n adds d283902 Fix import files adds c491979 Nettoyage des tag values + migration topia 3.0 adds 5df9496 Amélioration du site technique adds 75be19e up to topia and eugene snapshots adds b71258e USe new Version package adds 19d87d6 move migration files adds 5eb7c02 Improve logs adds abdc624 Review importLog model (make imported ids depends on his ImportFile + add lineNumber of each imported id) adds 8a9e58a Update migration test databases adds 2ef8fdd Add nice methods on ImportFile adds e09f24d Review import data cinematic, creating import log before do the math in order to be able to reuse imported ids from database to build the checked import file adds 0262d40 Update remove data api, but tests are not ok since test databases are to be rebuild :( adds a67b9e3 Add voyage id to importlog when created adds 0d299f5 Add normal resources to be included adds c61b1a4 Improve code adds c58fcaa Fix created importLog for remove data tests adds 5a12aa1 Use ToPIA 3 configuration adds 02c9fae move H2Dialect (nothing to do in root package) adds 5191cb5 Improve migration design (use Reflections to get possible migration) + make it works with ToPIA 3 adds 85a38c9 Use truth adds 59fd870 Use new API adds 1d25f66 clean code and do some method rename adds f168873 Fix H2 dialect and fix also test databases adds 6349f59 Fix abstract dao ? adds 4097786 Reformat code adds 0991c68 Use ToPIA persistence context close adds da6bb29 Utilisation nuitonWeb 1.17 pour être compatible avec ToPIA 3 adds 034ec06 La version 3.902 permet de lancer enfin echobase avec topia 3 sur tout type de base adds cfe3cd7 Introduction au final d'une vrai entité pour conserver chaque id importer (sinon on ne peut pas assurer l'ordre (la map n'est pas suffisante) + revue de la migration adds a53094d Utilisation de cet nouvel API ImortFileId dans les imports et suppression d'import adds 35ec2cf Retour sur la version 3.901 new a29df6b Retour sur develop (le modèle est stabilisé restera à effectuer les optimisations pour la génértion des fichiers d'export)" Merge branch 'feature/8170' into develop The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit a29df6b2e793803460600ce9fec924ae6a35144c Merge: 2fda67c 35ec2cf Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 08:42:06 2016 +0200 Retour sur develop (le modèle est stabilisé restera à effectuer les optimisations pour la génértion des fichiers d'export)" Merge branch 'feature/8170' into develop Summary of changes: echobase-domain/pom.xml | 65 +- .../echobase/config/EchoBaseConfiguration.java | 8 + .../config/EchoBaseConfigurationOption.java | 4 + .../fr/ifremer/echobase/csv/EchoBaseCsvUtil.java | 175 ---- .../fr/ifremer/echobase/entities/DriverType.java | 21 +- .../EchoBaseInternalTopiaApplicationContext.java | 72 ++ .../EchoBaseUserTopiaApplicationContext.java | 92 ++- .../echobase/entities/EchoBaseUserTopiaDao.java | 6 +- .../echobase/{ => entities}/FixedH2Dialect.java | 22 +- .../echobase/entities/ImportFileIdTopiaDao.java | 37 + .../echobase/entities/ImportFileTopiaDao.java | 17 + .../echobase/entities/ImportLogTopiaDao.java | 16 + .../ifremer/echobase/entities/data/CellImpl.java | 12 +- .../echobase/entities/data/CellTopiaDao.java | 6 - .../ifremer/echobase/entities/data/DataImpl.java | 18 + .../fr/ifremer/echobase/entities/data/Datas.java | 41 + .../echobase/entities/data/OperationImpl.java | 22 +- .../echobase/entities/data/SampleDataImpl.java | 18 + .../echobase/entities/data/SampleDatas.java | 19 + .../ifremer/echobase/entities/data/SampleImpl.java | 18 + .../echobase/entities/references/CellTypeImpl.java | 15 +- .../entities/references/DataMetadataImpl.java | 13 +- .../echobase/entities/references/GearImpl.java | 17 + .../entities/references/SampleDataTypeImpl.java | 17 +- .../entities/references/SampleTypeImpl.java | 10 + .../echobase/persistence/EchoBaseEntityHelper.java | 100 +-- .../EchobaseTopiaApplicationContexts.java | 233 ------ .../EchoBaseMigrationCallBackResolver.java | 63 +- .../MigrationCallBackForVersionSupport.java | 75 ++ .../migration/MigrationCallbackSupport.java | 24 + ... InternalDbMigrationCallBackForVersion2_2.java} | 25 +- ...ernalDbMigrationCallBackForVersionSupport.java} | 25 +- .../InternalDbMigrationCallback.java} | 18 +- ...> WorkingDbMigrationCallBackForVersion2_2.java} | 8 +- ...WorkingDbMigrationCallBackForVersion2_5_1.java} | 10 +- ...> WorkingDbMigrationCallBackForVersion2_6.java} | 16 +- ...WorkingDbMigrationCallBackForVersion2_6_1.java} | 12 +- ...WorkingDbMigrationCallBackForVersion2_7_2.java} | 12 +- ...WorkingDbMigrationCallBackForVersion3_900.java} | 36 +- .../WorkingDbMigrationCallBackForVersion3_901.java | 38 + ...rkingDbMigrationCallBackForVersionSupport.java} | 62 +- ...l.java => WorkingDbMigrationCallbackForH2.java} | 14 +- ...> WorkingDbMigrationCallbackForPostgresql.java} | 14 +- ...igration.internalDb.MigrationCallBackForVersion | 1 - ...migration.workingDb.MigrationCallBackForVersion | 5 - .../main/resources/echobase-internaldb.properties | 41 - .../main/resources/echobase-workingdb.properties | 41 - .../i18n/echobase-domain_en_GB.properties | 1 + .../i18n/echobase-domain_fr_FR.properties | 1 + .../workingDb/3.901-0-clean-importLog-table.sql | 2 + .../migration/workingDb/h2/3.900-0-fix-types.sql | 56 ++ .../h2/3.901-1-upgrade-importFile-table.sql | 10 + .../{ => pg}/2.5.1-0-postgis-structure.sql | 0 .../workingDb/{ => pg}/2.5.1-1-postgis-view.sql | 0 .../workingDb/{ => pg}/2.6-0-postgis-view.sql | 0 .../{ => pg}/2.6.1-0-postgis-structure.sql | 0 .../workingDb/{ => pg}/2.7.2-0-postgis-view.sql | 0 .../migration/workingDb/pg/3.900-0-fix-types.sql | 56 ++ .../3.901-1-upgrade-importFile-table.sql} | 13 +- .../src/main/xmi/echobase-internal.properties | 5 +- echobase-domain/src/main/xmi/echobase.properties | 20 +- echobase-domain/src/main/xmi/echobase.zargo | Bin 89705 -> 90396 bytes .../echobase/persistence/EchoBaseDbMetaTest.java | 2 +- echobase-services/pom.xml | 2 +- .../echobase/services/csv/BatchCsvExport.java | 100 +++ .../fr/ifremer/echobase/services/csv/CellAble.java | 22 + .../echobase/services/csv/CellValueFormatter.java | 115 +++ .../echobase/services}/csv/CellValueParser.java | 29 +- .../echobase/services}/csv/ChainValueParser.java | 13 +- .../echobase/services/csv/EchoBaseCsvUtil.java | 347 ++++++++ .../ifremer/echobase/services/csv/ResultAble.java | 23 + .../services/csv/ResultValueFormatter.java | 37 +- .../echobase/services/csv/ResultValueGetter.java | 29 + .../echobase/services}/csv/ResultValueParser.java | 9 +- .../echobase/services/csv/ResultValueSetter.java | 17 + .../services/csv/ValueFormatterByFunction.java | 24 + .../echobase/services/service/DbEditorService.java | 2 +- .../services/service/UserDbPersistenceService.java | 258 ++++-- .../EmbeddedApplicationService.java | 5 +- .../service/exportCoser/IndicatorExportModel.java | 2 +- .../exportCoser/RawDataCatchExportModel.java | 2 +- .../exportCoser/RawDataSizeExportModel.java | 4 +- .../exportCoser/RawDataStrataExportModel.java | 2 +- .../service/exportCoser/SpeciesExportModel.java | 2 +- .../service/exportquery/ExportQueryCsvModel.java | 2 +- .../importdata/AbstractImportDataService.java | 452 ---------- .../service/importdata/AcousticImportResult.java | 57 -- .../service/importdata/AcousticImportService.java | 778 ------------------ .../service/importdata/AgeCategoryCache.java | 53 ++ .../service/importdata/CatchesImportService.java | 535 ------------ .../service/importdata/CommonAllImportService.java | 67 -- .../importdata/CommonTransectImportService.java | 158 ---- .../importdata/CommonTransitImportService.java | 123 --- .../importdata/CommonVoyageImportService.java | 133 --- ...ion.java => DataMetadataNotFoundException.java} | 13 +- ...ception.java => DuplicatedSampleException.java} | 16 +- .../importdata/EchoBaseCsvFileImportResult.java | 60 -- ...=> ElementaryCellWithoutDepthEndException.java} | 13 +- ...ception.java => EsduCellNotFoundException.java} | 15 +- ...va => EsduCellWithDepthEndFilledException.java} | 13 +- .../service/importdata/ImportDataFileResult.java | 164 ++++ .../service/importdata/ImportDataResult.java | 45 + .../service/importdata/ImportDataService.java | 382 +++++++++ .../service/importdata/ImportException.java | 4 +- .../MismatchAgeCategoryMeaningException.java | 19 + .../MismatchSizeCategoryMeaningException.java | 19 + ...ommonImportService.java => MissionService.java} | 53 +- ...va => MoreThanOnceVoyageToImportException.java} | 12 +- ...ava => NoTransitFoundBetweenDateException.java} | 14 +- ...ception.java => NoVoyageToImportException.java} | 12 +- .../service/importdata/OperationImportService.java | 284 ------- .../service/importdata/ResultCategoryCache.java | 93 +++ .../importdata/ResultsEsduCellImportService.java | 500 ----------- .../service/importdata/ResultsImportService.java | 131 --- .../ResultsMapFishCellImportService.java | 231 ------ .../ResultsMapOtherCellImportService.java | 204 ----- .../importdata/ResultsRegionCellImportService.java | 315 ------- .../ResultsVoyageImportAlreadyExistException.java | 8 +- .../importdata/ResultsVoyageImportService.java | 345 -------- .../service/importdata/SizeCategoryCache.java | 53 ++ .../service/importdata/SpeciesCategoryCache.java | 82 ++ ...ception.java => TransectNotFoundException.java} | 15 +- ...xception.java => TransitNotFoundException.java} | 14 +- .../actions/ImportDataActionSupport.java | 441 ++++++++++ .../actions/VoyageAcousticsImportAction.java | 915 +++++++++++++++++++++ .../VoyageAcousticsImportDataActionSupport.java | 18 + .../VoyageCatchesBiometrySampleImportAction.java | 157 ++++ .../VoyageCatchesImportDataActionSupport.java | 61 ++ .../VoyageCatchesSubSampleImportAction.java | 338 ++++++++ .../VoyageCatchesTotalSampleImportAction.java | 229 ++++++ .../VoyageCommonsImportDataActionSupport.java | 18 + .../actions/VoyageCommonsTransectImportAction.java | 127 +++ .../actions/VoyageCommonsTransitImportAction.java | 110 +++ .../actions/VoyageCommonsVoyageImportAction.java | 122 +++ .../VoyageOperationsGearMetadataImportAction.java | 115 +++ .../VoyageOperationsImportDataActionSupport.java | 18 + .../VoyageOperationsOperationImportAction.java | 121 +++ ...ageOperationsOperationMetadataImportAction.java | 114 +++ .../VoyageResultsCellImportDataActionSupport.java | 142 ++++ ...EchotypeAndSpeciesCategoryCellImportAction.java | 51 ++ ...oyageResultsEsduByEchotypeCellImportAction.java | 47 ++ ...sEsduSpeciesAndAgeCategoryCellImportAction.java | 59 ++ ...EsduSpeciesAndSizeCategoryCellImportAction.java | 63 ++ .../VoyageResultsImportDataActionSupport.java | 69 ++ .../VoyageResultsMapFishCellImportAction.java | 231 ++++++ .../VoyageResultsMapOtherCellImportAction.java | 199 +++++ ...VoyageResultsRegionAssociationImportAction.java | 105 +++ .../actions/VoyageResultsRegionImportAction.java | 167 ++++ .../VoyageResultsRegionResultsImportAction.java | 189 +++++ .../VoyageResultsVoyageEchotypeImportAction.java | 144 ++++ ...oyageResultsVoyageLengthAgeKeyImportAction.java | 96 +++ ...geResultsVoyageLengthWeightKeyImportAction.java | 105 +++ .../ImportDataConfigurationSupport.java} | 33 +- .../VoyageAcousticsImportConfiguration.java} | 31 +- .../VoyageCatchesImportConfiguration.java} | 21 +- .../VoyageCommonsImportConfiguration.java} | 38 +- .../VoyageImportDataConfigurationSupport.java} | 18 +- .../VoyageOperationsImportConfiguration.java} | 19 +- .../VoyageResultsImportConfiguration.java} | 95 +-- .../contexts/ImportDataContextSupport.java | 270 ++++++ .../contexts/VoyageAcousticsImportDataContext.java | 21 + .../contexts/VoyageCatchesImportDataContext.java | 122 +++ .../contexts/VoyageCommonsImportDataContext.java | 21 + .../contexts/VoyageImportDataContextSupport.java | 121 +++ .../VoyageOperationsImportDataContext.java | 21 + .../contexts/VoyageResultsImportDataContext.java | 214 +++++ .../importdata/csv/AcousticImportModel.java | 136 --- .../importdata/csv/BiometrySampleImportModel.java | 60 -- .../csv/EchoBaseImportExportModelSupport.java | 51 ++ .../importdata/csv/EchotypeImportModel.java | 58 -- ...ultByEchotypeAndSpeciesCategoryImportModel.java | 88 -- .../csv/EsduResultByEchotypeImportModel.java | 79 -- ...duResultBySpeciesAndAgeCategoryImportModel.java | 83 -- ...uResultBySpeciesAndSizeCategoryImportModel.java | 83 -- .../csv/GearMetadataValueImportModel.java | 62 -- .../importdata/csv/LengthAgeKeyImportModel.java | 60 -- .../importdata/csv/LengthWeightKeyImportModel.java | 60 -- .../service/importdata/csv/MapCellImportModel.java | 125 --- .../importdata/csv/OperationImportModel.java | 65 -- .../csv/OperationMetadataValueImportModel.java | 57 -- .../csv/RegionCellAssociationImportModel.java | 53 -- .../importdata/csv/RegionCellImportModel.java | 58 -- .../csv/RegionCellResultImportModel.java | 84 -- .../importdata/csv/SubSampleImportModel.java | 70 -- .../importdata/csv/TotalSampleImportModel.java | 63 -- .../importdata/csv/TransectImportModel.java | 74 -- .../service/importdata/csv/TransitImportModel.java | 53 -- .../csv/VoyageAcousticImportExportModel.java | 223 +++++ ...ImportRow.java => VoyageAcousticImportRow.java} | 93 ++- ...yageCatchesBiometrySampleImportExportModel.java | 71 ++ ...a => VoyageCatchesBiometrySampleImportRow.java} | 44 +- .../VoyageCatchesSubSampleImportExportModel.java | 87 ++ ...w.java => VoyageCatchesSubSampleImportRow.java} | 46 +- .../VoyageCatchesTotalSampleImportExportModel.java | 78 ++ ...java => VoyageCatchesTotalSampleImportRow.java} | 39 +- .../VoyageCommonsTransectImportExportModel.java | 92 +++ ...ow.java => VoyageCommonsTransectImportRow.java} | 120 ++- .../csv/VoyageCommonsTransitImportExportModel.java | 70 ++ ...Row.java => VoyageCommonsTransitImportRow.java} | 50 +- .../csv/VoyageCommonsVoyageImportExportModel.java | 68 ++ .../service/importdata/csv/VoyageImportModel.java | 49 -- ...erationsGearMetadataValueImportExportModel.java | 72 ++ ...oyageOperationsGearMetadataValueImportRow.java} | 36 +- ...VoyageOperationsOperationImportExportModel.java | 84 ++ ...ava => VoyageOperationsOperationImportRow.java} | 67 +- ...onsOperationMetadataValueImportExportModel.java | 68 ++ ...OperationsOperationMetadataValueImportRow.java} | 40 +- ...chotypeAndSpeciesCategoryImportExportModel.java | 93 +++ ...EsduByEchotypeAndSpeciesCategoryImportRow.java} | 73 +- ...yageResultsEsduByEchotypeImportExportModel.java | 83 ++ ...a => VoyageResultsEsduByEchotypeImportRow.java} | 53 +- ...duBySpeciesAndAgeCategoryImportExportModel.java | 91 ++ ...sultsEsduBySpeciesAndAgeCategoryImportRow.java} | 81 +- ...uBySpeciesAndSizeCategoryImportExportModel.java | 93 +++ ...ultsEsduBySpeciesAndSizeCategoryImportRow.java} | 81 +- .../VoyageResultsMapFishCellImportExportModel.java | 114 +++ ...java => VoyageResultsMapFishCellImportRow.java} | 127 +-- ...VoyageResultsMapOtherCellImportExportModel.java | 99 +++ ...ava => VoyageResultsMapOtherCellImportRow.java} | 131 ++- ...ultsRegionCellAssociationImportExportModel.java | 68 ++ ...yageResultsRegionCellAssociationImportRow.java} | 32 +- .../VoyageResultsRegionCellImportExportModel.java | 71 ++ ....java => VoyageResultsRegionCellImportRow.java} | 56 +- ...geResultsRegionCellResultImportExportModel.java | 93 +++ ...=> VoyageResultsRegionCellResultImportRow.java} | 79 +- ...yageResultsVoyageEchotypeImportExportModel.java | 73 ++ ...a => VoyageResultsVoyageEchotypeImportRow.java} | 44 +- ...ResultsVoyageLengthAgeKeyImportExportModel.java | 76 ++ ... VoyageResultsVoyageLengthAgeKeyImportRow.java} | 46 +- ...ultsVoyageLengthWeightKeyImportExportModel.java | 77 ++ ...yageResultsVoyageLengthWeightKeyImportRow.java} | 42 +- .../importdb/strategy/FreeImportDbStrategy.java | 13 +- .../service/removedata/RemoveDataService.java | 24 +- .../strategy/AbstractRemoveDataStrategy.java | 34 +- .../strategy/AcousticRemoveDataStrategy.java | 2 +- .../strategy/CatchesRemoveDataStrategy.java | 2 +- .../strategy/CommonAllRemoveDataStrategy.java | 2 +- .../strategy/CommonTransectRemoveDataStrategy.java | 2 +- .../strategy/CommonTransitRemoveDataStrategy.java | 2 +- .../strategy/CommonVoyageRemoveDataStrategy.java | 2 +- .../strategy/LegacyVoyageRemoveDataStrategy.java | 2 +- .../strategy/OperationRemoveDataStrategy.java | 2 +- .../strategy/ResultEsduRemoveDataStrategy.java | 2 +- .../strategy/ResultMapFishRemoveDataStrategy.java | 2 +- .../strategy/ResultMapOtherRemoveDataStrategy.java | 2 +- .../strategy/ResultRegionRemoveDataStrategy.java | 2 +- .../strategy/ResultVoyageRemoveDataStrategy.java | 2 +- .../i18n/echobase-services_en_GB.properties | 5 + .../i18n/echobase-services_fr_FR.properties | 5 + .../echobase/services/EchoBaseServiceFixtures.java | 30 +- .../services/EchoBaseTestServiceSupport.java | 169 +--- .../services/FakeEchoBaseServiceContext.java | 73 +- .../fr/ifremer/echobase/services/FixCellsIT.java | 23 +- .../echobase/services/ImportDataFixtures.java | 132 +++ .../services/MigrateImportDataDatabasesIT.java | 129 +++ .../EmbeddedApplicationServiceIT.java | 4 +- .../exportCoser/ExportCoserServiceTest.java | 3 +- .../service/exportdb/ExportDbServiceTest.java | 4 +- .../importdata/AbstractImportDataServiceIT.java | 236 +++--- .../service/importdata/CatchesImportServiceIT.java | 160 ---- .../importdata/CommonAllImportServiceIT.java | 92 --- .../importdata/CommonTransectImportServiceIT.java | 82 -- .../importdata/CommonTransitImportServiceIT.java | 87 -- .../importdata/CommonVoyageImportServiceIT.java | 83 -- .../importdata/OperationImportServiceIT.java | 83 -- .../importdata/ResultsEsduCellImportServiceIT.java | 191 ----- .../ResultsMapFishCellImportServiceIT.java | 80 -- .../ResultsMapOtherCellImportServiceIT.java | 79 -- .../ResultsRegionCellImportServiceIT.java | 92 --- .../importdata/ResultsVoyageImportServiceIT.java | 162 ---- ...eIT.java => VoyageAcousticImportServiceIT.java} | 73 +- .../VoyageCatchesAllImportServiceIT.java | 94 +++ .../VoyageCatchesImportServiceITSupport.java | 55 ++ ...geCatchesOnlyBiometrySampleImportServiceIT.java | 67 ++ .../VoyageCatchesOnlySubSampleImportServiceIT.java | 67 ++ ...oyageCatchesOnlyTotalSampleImportServiceIT.java | 67 ++ .../VoyageCommonsAllImportServiceIT.java | 98 +++ .../VoyageCommonsImportServiceITSupport.java | 53 ++ .../VoyageCommonsOnlyTransectImportServiceIT.java | 93 +++ .../VoyageCommonsOnlyTransitImportServiceIT.java | 93 +++ .../VoyageCommonsOnlyVoyageImportServiceIT.java | 82 ++ .../importdata/VoyageOperationImportServiceIT.java | 92 +++ ...yEchotypeAndSpeciesCategoryImportServiceIT.java | 84 ++ ...ResultsEsduCellOnlyEchotypeImportServiceIT.java | 81 ++ ...llOnlySpeciesAndAgeCategoryImportServiceIT.java | 91 ++ ...lOnlySpeciesAndSizeCategoryImportServiceIT.java | 91 ++ .../VoyageResultsImportServiceITSupport.java | 51 ++ .../VoyageResultsMapFishCellImportServiceIT.java | 77 ++ .../VoyageResultsMapOtherCellImportServiceIT.java | 75 ++ .../VoyageResultsRegionCellImportServiceIT.java | 103 +++ .../VoyageResultsVoyageImportServiceIT.java | 88 ++ ...geResultsVoyageOnlyEchotypeImportServiceIT.java | 68 ++ ...sultsVoyageOnlyLengthAgeKeyImportServiceIT.java | 68 ++ ...tsVoyageOnlyLengthWeightKeyImportServiceIT.java | 68 ++ .../removedata/AbstractRemoveDataServiceTest.java | 112 ++- .../resources/import-data/acoustic/movies.csv.gz | Bin 596169 -> 596169 bytes .../import-data/acoustic/movies_small.csv.gz | Bin 0 -> 6141 bytes .../resources/import-data/catches/subsample.csv.gz | Bin 931 -> 920 bytes .../import-data/catches/subsample_all.csv.gz | Bin 23572 -> 22400 bytes .../echobase-catches-and-voyage-result.h2.db.gz | Bin 705722 -> 632318 bytes .../import-data/echobase-catches.h2.db.gz | Bin 662677 -> 594894 bytes .../import-data/echobase-commonData.h2.db.gz | Bin 178638 -> 183714 bytes .../resources/import-data/echobase-nodata.h2.db.gz | Bin 129028 -> 136848 bytes .../echobase-operation-total-samples.h2.db.gz | Bin 0 -> 602363 bytes .../import-data/echobase-operation.h2.db.gz | Bin 324421 -> 328618 bytes .../import-data/result/esdu/byEchotype.csv.gz | Bin 73537 -> 73195 bytes .../esdu/byEchotypeAndSpeciesCategory.csv.gz | Bin 547091 -> 547121 bytes .../esdu/byEchotypeAndSpeciesCategory_small.csv.gz | Bin 0 -> 2042 bytes .../result/esdu/byEchotype_small.csv.gz | Bin 0 -> 2802 bytes .../result/esdu/bySpeciesAndAgeCategory.csv.gz | Bin 141033 -> 141214 bytes .../esdu/bySpeciesAndAgeCategory_small.csv.gz | Bin 0 -> 2379 bytes .../result/esdu/bySpeciesAndSizeCategory.csv.gz | Bin 707226 -> 709007 bytes .../esdu/bySpeciesAndSizeCategory_small.csv.gz | Bin 0 -> 2544 bytes .../result/region/regionAssociations_small.csv.gz | Bin 0 -> 296 bytes echobase-ui/pom.xml | 15 +- .../echobase/ui/EchoBaseApplicationContext.java | 9 +- .../fr/ifremer/echobase/ui/EchoBaseSession.java | 5 +- .../echobase/ui/actions/dbeditor/GetEntities.java | 3 +- .../importData/AbstractConfigureImport.java | 4 +- .../actions/importData/AbstractLaunchImport.java | 19 +- .../importData/ConfigureAcousticImport.java | 12 +- .../actions/importData/ConfigureCatchesImport.java | 12 +- .../actions/importData/ConfigureCommonImport.java | 20 +- .../importData/ConfigureOperationImport.java | 12 +- .../actions/importData/ConfigureResultsImport.java | 12 +- .../ui/actions/importData/CreateMission.java | 6 +- .../importData/GetDataProcessingsForVoyage.java | 5 +- .../actions/importData/LaunchAcousticImport.java | 15 +- .../ui/actions/importData/LaunchCatchesImport.java | 15 +- .../ui/actions/importData/LaunchCommonImport.java | 15 +- .../actions/importData/LaunchOperationImport.java | 15 +- .../ui/actions/importData/LaunchResultsImport.java | 16 +- .../echobase/ui/actions/workingDb/Connect.java | 4 +- .../ui/actions/workingDb/CreatePostgresDb.java | 10 +- pom.xml | 34 +- src/site/site_fr.xml | 6 + 336 files changed, 13962 insertions(+), 9236 deletions(-) delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/csv/EchoBaseCsvUtil.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/EchoBaseInternalTopiaApplicationContext.java rename echobase-domain/src/main/java/fr/ifremer/echobase/{ => entities}/FixedH2Dialect.java (75%) create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileIdTopiaDao.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileTopiaDao.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportLogTopiaDao.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/DataImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/Datas.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/SampleDataImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/SampleDatas.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/data/SampleImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/references/GearImpl.java delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/EchobaseTopiaApplicationContexts.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/MigrationCallBackForVersionSupport.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/MigrationCallbackSupport.java rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/{MigrationCallBackForVersion2_2.java => InternalDbMigrationCallBackForVersion2_2.java} (95%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/{MigrationCallBackForVersion.java => InternalDbMigrationCallBackForVersionSupport.java} (63%) copy echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/{workingDb/MigrationCallBackForVersionPostgresql.java => internalDb/InternalDbMigrationCallback.java} (65%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_2.java => WorkingDbMigrationCallBackForVersion2_2.java} (91%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_5_1.java => WorkingDbMigrationCallBackForVersion2_5_1.java} (84%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_6.java => WorkingDbMigrationCallBackForVersion2_6.java} (95%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_6_1.java => WorkingDbMigrationCallBackForVersion2_6_1.java} (87%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_7_2.java => WorkingDbMigrationCallBackForVersion2_7_2.java} (89%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallback.java => WorkingDbMigrationCallBackForVersion3_900.java} (50%) create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/WorkingDbMigrationCallBackForVersion3_901.java rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion.java => WorkingDbMigrationCallBackForVersionSupport.java} (58%) copy echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersionPostgresql.java => WorkingDbMigrationCallbackForH2.java} (69%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersionPostgresql.java => WorkingDbMigrationCallbackForPostgresql.java} (68%) delete mode 100644 echobase-domain/src/main/resources/META-INF/services/fr.ifremer.echobase.persistence.migration.internalDb.MigrationCallBackForVersion delete mode 100644 echobase-domain/src/main/resources/META-INF/services/fr.ifremer.echobase.persistence.migration.workingDb.MigrationCallBackForVersion delete mode 100644 echobase-domain/src/main/resources/echobase-internaldb.properties delete mode 100644 echobase-domain/src/main/resources/echobase-workingdb.properties create mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.901-0-clean-importLog-table.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.900-0-fix-types.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.901-1-upgrade-importFile-table.sql rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.5.1-0-postgis-structure.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.5.1-1-postgis-view.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.6-0-postgis-view.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.6.1-0-postgis-structure.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.7.2-0-postgis-view.sql (100%) create mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.900-0-fix-types.sql copy echobase-domain/src/main/resources/migration/workingDb/{h2/2.7.2-1-add-importFile-entity.sql => pg/3.901-1-upgrade-importFile-table.sql} (50%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/BatchCsvExport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/CellAble.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/CellValueFormatter.java rename {echobase-domain/src/main/java/fr/ifremer/echobase => echobase-services/src/main/java/fr/ifremer/echobase/services}/csv/CellValueParser.java (76%) rename {echobase-domain/src/main/java/fr/ifremer/echobase => echobase-services/src/main/java/fr/ifremer/echobase/services}/csv/ChainValueParser.java (86%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/EchoBaseCsvUtil.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ResultAble.java rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/MigrationCallback.java => echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ResultValueFormatter.java (50%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ResultValueGetter.java rename {echobase-domain/src/main/java/fr/ifremer/echobase => echobase-services/src/main/java/fr/ifremer/echobase/services}/csv/ResultValueParser.java (90%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ResultValueSetter.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/csv/ValueFormatterByFunction.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/AbstractImportDataService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/AcousticImportResult.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/AcousticImportService.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/AgeCategoryCache.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CatchesImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CommonAllImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CommonTransectImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CommonTransitImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/CommonVoyageImportService.java copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => DataMetadataNotFoundException.java} (70%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => DuplicatedSampleException.java} (57%) delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/EchoBaseCsvFileImportResult.java copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => ElementaryCellWithoutDepthEndException.java} (66%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => EsduCellNotFoundException.java} (61%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => EsduCellWithDepthEndFilledException.java} (67%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ImportDataFileResult.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ImportDataResult.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ImportDataService.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/MismatchAgeCategoryMeaningException.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/MismatchSizeCategoryMeaningException.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{CommonImportService.java => MissionService.java} (55%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => MoreThanOnceVoyageToImportException.java} (74%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => NoTransitFoundBetweenDateException.java} (65%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => NoVoyageToImportException.java} (76%) delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/OperationImportService.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultCategoryCache.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsEsduCellImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsMapFishCellImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsMapOtherCellImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsRegionCellImportService.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/ResultsVoyageImportService.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/SizeCategoryCache.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/SpeciesCategoryCache.java copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => TransectNotFoundException.java} (64%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsVoyageImportAlreadyExistException.java => TransitNotFoundException.java} (68%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/ImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageAcousticsImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageAcousticsImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCatchesBiometrySampleImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCatchesImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCatchesSubSampleImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCatchesTotalSampleImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCommonsImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCommonsTransectImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCommonsTransitImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageCommonsVoyageImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageOperationsGearMetadataImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageOperationsImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageOperationsOperationImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageOperationsOperationMetadataImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsCellImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsEsduByEchotypeAndSpeciesCategoryCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsEsduByEchotypeCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsEsduSpeciesAndAgeCategoryCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsEsduSpeciesAndSizeCategoryCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsImportDataActionSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsMapFishCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsMapOtherCellImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsRegionAssociationImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsRegionImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsRegionResultsImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsVoyageEchotypeImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsVoyageLengthAgeKeyImportAction.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/actions/VoyageResultsVoyageLengthWeightKeyImportAction.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{AbstractImportConfiguration.java => configurations/ImportDataConfigurationSupport.java} (70%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{AcousticImportConfiguration.java => configurations/VoyageAcousticsImportConfiguration.java} (95%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{CatchesImportConfiguration.java => configurations/VoyageCatchesImportConfiguration.java} (74%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{CommonImportConfiguration.java => configurations/VoyageCommonsImportConfiguration.java} (89%) copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/{exportquery/ExportQueryNameAlreadyExistException.java => importdata/configurations/VoyageImportDataConfigurationSupport.java} (66%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{OperationImportConfiguration.java => configurations/VoyageOperationsImportConfiguration.java} (71%) rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/{ResultsImportConfiguration.java => configurations/VoyageResultsImportConfiguration.java} (64%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/ImportDataContextSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageAcousticsImportDataContext.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageCatchesImportDataContext.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageCommonsImportDataContext.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageImportDataContextSupport.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageOperationsImportDataContext.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/contexts/VoyageResultsImportDataContext.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/AcousticImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/BiometrySampleImportModel.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EchoBaseImportExportModelSupport.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EchotypeImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EsduResultByEchotypeAndSpeciesCategoryImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EsduResultByEchotypeImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EsduResultBySpeciesAndAgeCategoryImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/EsduResultBySpeciesAndSizeCategoryImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/GearMetadataValueImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/LengthAgeKeyImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/LengthWeightKeyImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/MapCellImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/OperationImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/OperationMetadataValueImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/RegionCellAssociationImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/RegionCellImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/RegionCellResultImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/SubSampleImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/TotalSampleImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/TransectImportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/TransitImportModel.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageAcousticImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{AcousticImportRow.java => VoyageAcousticImportRow.java} (70%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCatchesBiometrySampleImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{BiometrySampleImportRow.java => VoyageCatchesBiometrySampleImportRow.java} (69%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCatchesSubSampleImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{SubSampleImportRow.java => VoyageCatchesSubSampleImportRow.java} (80%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCatchesTotalSampleImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{TotalSampleImportRow.java => VoyageCatchesTotalSampleImportRow.java} (77%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCommonsTransectImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{TransectImportRow.java => VoyageCommonsTransectImportRow.java} (54%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCommonsTransitImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{TransitImportRow.java => VoyageCommonsTransitImportRow.java} (67%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageCommonsVoyageImportExportModel.java delete mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageImportModel.java create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageOperationsGearMetadataValueImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{GearMetadataValueImportRow.java => VoyageOperationsGearMetadataValueImportRow.java} (65%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageOperationsOperationImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{OperationImportRow.java => VoyageOperationsOperationImportRow.java} (64%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageOperationsOperationMetadataValueImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{OperationMetadataValueImportRow.java => VoyageOperationsOperationMetadataValueImportRow.java} (64%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsEsduByEchotypeAndSpeciesCategoryImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{RegionCellResultImportRow.java => VoyageResultsEsduByEchotypeAndSpeciesCategoryImportRow.java} (72%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsEsduByEchotypeImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EsduResultByEchotypeImportRow.java => VoyageResultsEsduByEchotypeImportRow.java} (69%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsEsduBySpeciesAndAgeCategoryImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EsduResultBySpeciesAndAgeCategoryImportRow.java => VoyageResultsEsduBySpeciesAndAgeCategoryImportRow.java} (68%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsEsduBySpeciesAndSizeCategoryImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EsduResultBySpeciesAndSizeCategoryImportRow.java => VoyageResultsEsduBySpeciesAndSizeCategoryImportRow.java} (68%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsMapFishCellImportExportModel.java copy echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{MapCellImportRow.java => VoyageResultsMapFishCellImportRow.java} (81%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsMapOtherCellImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{MapCellImportRow.java => VoyageResultsMapOtherCellImportRow.java} (74%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsRegionCellAssociationImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{RegionCellAssociationImportRow.java => VoyageResultsRegionCellAssociationImportRow.java} (75%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsRegionCellImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{RegionCellImportRow.java => VoyageResultsRegionCellImportRow.java} (70%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsRegionCellResultImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EsduResultByEchotypeAndSpeciesCategoryImportRow.java => VoyageResultsRegionCellResultImportRow.java} (64%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsVoyageEchotypeImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{EchotypeImportRow.java => VoyageResultsVoyageEchotypeImportRow.java} (63%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsVoyageLengthAgeKeyImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{LengthAgeKeyImportRow.java => VoyageResultsVoyageLengthAgeKeyImportRow.java} (65%) create mode 100644 echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/VoyageResultsVoyageLengthWeightKeyImportExportModel.java rename echobase-services/src/main/java/fr/ifremer/echobase/services/service/importdata/csv/{LengthWeightKeyImportRow.java => VoyageResultsVoyageLengthWeightKeyImportRow.java} (68%) create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/ImportDataFixtures.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/MigrateImportDataDatabasesIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CatchesImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CommonAllImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CommonTransectImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CommonTransitImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/CommonVoyageImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/OperationImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsEsduCellImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsMapFishCellImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsMapOtherCellImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsRegionCellImportServiceIT.java delete mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/ResultsVoyageImportServiceIT.java rename echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/{AcousticImportServiceIT.java => VoyageAcousticImportServiceIT.java} (54%) create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesAllImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesImportServiceITSupport.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesOnlyBiometrySampleImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesOnlySubSampleImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCatchesOnlyTotalSampleImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsAllImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsImportServiceITSupport.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsOnlyTransectImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsOnlyTransitImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageCommonsOnlyVoyageImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageOperationImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsEsduCellOnlyEchotypeAndSpeciesCategoryImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsEsduCellOnlyEchotypeImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsEsduCellOnlySpeciesAndAgeCategoryImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsEsduCellOnlySpeciesAndSizeCategoryImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsImportServiceITSupport.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsMapFishCellImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsMapOtherCellImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsRegionCellImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsVoyageImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsVoyageOnlyEchotypeImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsVoyageOnlyLengthAgeKeyImportServiceIT.java create mode 100644 echobase-services/src/test/java/fr/ifremer/echobase/services/service/importdata/VoyageResultsVoyageOnlyLengthWeightKeyImportServiceIT.java create mode 100644 echobase-services/src/test/resources/import-data/acoustic/movies_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/echobase-operation-total-samples.h2.db.gz create mode 100644 echobase-services/src/test/resources/import-data/result/esdu/byEchotypeAndSpeciesCategory_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/result/esdu/byEchotype_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/result/esdu/bySpeciesAndAgeCategory_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/result/esdu/bySpeciesAndSizeCategory_small.csv.gz create mode 100644 echobase-services/src/test/resources/import-data/result/region/regionAssociations_small.csv.gz -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch feature/8170 deleted (was 35ec2cf)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git was 35ec2cf Retour sur la version 3.901 The revisions that were on this branch are still contained in other references; therefore, this change does not discard any commits from the repository. -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

branch feature/8170 updated (a53094d -> 35ec2cf)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from a53094d Utilisation de cet nouvel API ImortFileId dans les imports et suppression d'import new 35ec2cf Retour sur la version 3.901 The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 35ec2cfff0b9988039a678b77b217fdeea94f344 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Fri Apr 29 08:35:57 2016 +0200 Retour sur la version 3.901 Summary of changes: .../WorkingDbMigrationCallBackForVersion3_901.java | 2 +- .../src/main/xmi/echobase-internal.properties | 3 ++- echobase-domain/src/main/xmi/echobase.properties | 3 +-- .../echobase-catches-and-voyage-result.h2.db.gz | Bin 627546 -> 632318 bytes .../import-data/echobase-catches.h2.db.gz | Bin 594902 -> 594894 bytes .../import-data/echobase-commonData.h2.db.gz | Bin 190649 -> 183714 bytes .../resources/import-data/echobase-nodata.h2.db.gz | Bin 144051 -> 136848 bytes .../echobase-operation-total-samples.h2.db.gz | Bin 597481 -> 602363 bytes .../import-data/echobase-operation.h2.db.gz | Bin 324995 -> 328618 bytes 9 files changed, 4 insertions(+), 4 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch feature/8170 updated (034ec06 -> a53094d)
by codelutin.com scm April 29, 2016

April 29, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 034ec06 La version 3.902 permet de lancer enfin echobase avec topia 3 sur tout type de base adds cfe3cd7 Introduction au final d'une vrai entité pour conserver chaque id importer (sinon on ne peut pas assurer l'ordre (la map n'est pas suffisante) + revue de la migration adds a53094d Utilisation de cet nouvel API ImortFileId dans les imports et suppression d'import No new revisions were added by this update. Summary of changes: .../echobase/entities/ImportFileIdTopiaDao.java | 37 ++++++++ .../echobase/entities/ImportFileImpl.hbm.xml | 22 ----- .../ifremer/echobase/entities/ImportFileImpl.java | 30 ------ .../echobase/entities/ImportFileTopiaDao.java | 17 ++++ .../ifremer/echobase/entities/ImportLogImpl.java | 35 ------- .../echobase/entities/ImportLogTopiaDao.java | 16 ++++ .../WorkingDbMigrationCallBackForVersion3_900.java | 6 +- .../WorkingDbMigrationCallBackForVersion3_901.java | 13 +-- .../WorkingDbMigrationCallBackForVersion3_902.java | 33 ------- .../workingDb/3.901-0-clean-importLog-table.sql | 2 + .../3.901-2-drop-importLog_importId-table.sql | 1 - .../3.901-3-drop-importLog-voyageId-notNull.sql | 1 - ...3.902-0-fix-types.sql => 3.900-0-fix-types.sql} | 0 .../h2/3.901-0-add-importFile_importId-table.sql | 2 - .../3.901-1-add-importFile-importText-column.sql | 1 - .../h2/3.901-1-upgrade-importFile-table.sql | 10 ++ .../workingDb/pg/3.900-0-add-check-file.sql | 21 ----- ...3.902-0-fix-types.sql => 3.900-0-fix-types.sql} | 0 .../pg/3.901-0-add-importFile_importId-table.sql | 2 - .../3.901-1-add-importFile-importText-column.sql | 1 - .../3.901-1-upgrade-importFile-table.sql} | 11 ++- echobase-domain/src/main/xmi/echobase.properties | 10 +- echobase-domain/src/main/xmi/echobase.zargo | Bin 90261 -> 90396 bytes .../services/service/UserDbPersistenceService.java | 53 +++++++++++ .../service/importdata/ImportDataFileResult.java | 22 ++++- .../actions/ImportDataActionSupport.java | 104 +++++++++++++-------- .../actions/VoyageAcousticsImportAction.java | 13 ++- .../VoyageCatchesBiometrySampleImportAction.java | 16 ++-- .../VoyageCatchesImportDataActionSupport.java | 4 +- .../VoyageCatchesSubSampleImportAction.java | 11 ++- .../VoyageCatchesTotalSampleImportAction.java | 12 +-- .../actions/VoyageCommonsTransectImportAction.java | 9 +- .../actions/VoyageCommonsTransitImportAction.java | 11 +-- .../actions/VoyageCommonsVoyageImportAction.java | 9 +- .../VoyageOperationsGearMetadataImportAction.java | 12 ++- .../VoyageOperationsOperationImportAction.java | 10 +- ...ageOperationsOperationMetadataImportAction.java | 12 +-- .../VoyageResultsCellImportDataActionSupport.java | 11 +-- ...oyageResultsEsduByEchotypeCellImportAction.java | 2 +- .../VoyageResultsImportDataActionSupport.java | 2 +- .../VoyageResultsMapFishCellImportAction.java | 10 +- .../VoyageResultsMapOtherCellImportAction.java | 7 +- ...VoyageResultsRegionAssociationImportAction.java | 3 +- .../actions/VoyageResultsRegionImportAction.java | 9 +- .../VoyageResultsVoyageEchotypeImportAction.java | 5 +- ...oyageResultsVoyageLengthAgeKeyImportAction.java | 6 +- ...geResultsVoyageLengthWeightKeyImportAction.java | 6 +- .../service/removedata/RemoveDataService.java | 24 ++++- .../strategy/AbstractRemoveDataStrategy.java | 34 +++++-- .../strategy/AcousticRemoveDataStrategy.java | 2 +- .../strategy/CatchesRemoveDataStrategy.java | 2 +- .../strategy/CommonAllRemoveDataStrategy.java | 2 +- .../strategy/CommonTransectRemoveDataStrategy.java | 2 +- .../strategy/CommonTransitRemoveDataStrategy.java | 2 +- .../strategy/CommonVoyageRemoveDataStrategy.java | 2 +- .../strategy/LegacyVoyageRemoveDataStrategy.java | 2 +- .../strategy/OperationRemoveDataStrategy.java | 2 +- .../strategy/ResultEsduRemoveDataStrategy.java | 2 +- .../strategy/ResultMapFishRemoveDataStrategy.java | 2 +- .../strategy/ResultMapOtherRemoveDataStrategy.java | 2 +- .../strategy/ResultRegionRemoveDataStrategy.java | 2 +- .../strategy/ResultVoyageRemoveDataStrategy.java | 2 +- .../importdata/AbstractImportDataServiceIT.java | 2 +- .../removedata/AbstractRemoveDataServiceTest.java | 4 +- 64 files changed, 397 insertions(+), 323 deletions(-) create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileIdTopiaDao.java delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileImpl.hbm.xml delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileTopiaDao.java delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportLogImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportLogTopiaDao.java delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/WorkingDbMigrationCallBackForVersion3_902.java create mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.901-0-clean-importLog-table.sql delete mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.901-2-drop-importLog_importId-table.sql delete mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.901-3-drop-importLog-voyageId-notNull.sql rename echobase-domain/src/main/resources/migration/workingDb/h2/{3.902-0-fix-types.sql => 3.900-0-fix-types.sql} (100%) delete mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.901-0-add-importFile_importId-table.sql delete mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.901-1-add-importFile-importText-column.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.901-1-upgrade-importFile-table.sql delete mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.900-0-add-check-file.sql rename echobase-domain/src/main/resources/migration/workingDb/pg/{3.902-0-fix-types.sql => 3.900-0-fix-types.sql} (100%) delete mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.901-0-add-importFile_importId-table.sql delete mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.901-1-add-importFile-importText-column.sql rename echobase-domain/src/main/resources/migration/workingDb/{h2/3.900-0-add-check-file.sql => pg/3.901-1-upgrade-importFile-table.sql} (50%) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

branch feature/8170 updated (da6bb29 -> 034ec06)
by codelutin.com scm April 28, 2016

April 28, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from da6bb29 Utilisation nuitonWeb 1.17 pour être compatible avec ToPIA 3 new 034ec06 La version 3.902 permet de lancer enfin echobase avec topia 3 sur tout type de base The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit 034ec06f0008d4769a4569b6fde6c39cfb9dfdb6 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Thu Apr 28 13:12:26 2016 +0200 La version 3.902 permet de lancer enfin echobase avec topia 3 sur tout type de base Summary of changes: .../EchoBaseInternalTopiaApplicationContext.java | 2 +- .../EchoBaseUserTopiaApplicationContext.java | 2 +- .../WorkingDbMigrationCallBackForVersion3_901.java | 1 + ...WorkingDbMigrationCallBackForVersion3_902.java} | 11 ++--- .../migration/workingDb/h2/3.902-0-fix-types.sql | 56 ++++++++++++++++++++++ .../pg/3.901-0-add-importFile_importId-table.sql | 2 + .../3.901-1-add-importFile-importText-column.sql | 1 + .../migration/workingDb/pg/3.902-0-fix-types.sql | 56 ++++++++++++++++++++++ echobase-domain/src/main/xmi/echobase.properties | 2 +- 9 files changed, 123 insertions(+), 10 deletions(-) copy echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{WorkingDbMigrationCallBackForVersion3_901.java => WorkingDbMigrationCallBackForVersion3_902.java} (60%) create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.902-0-fix-types.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.901-0-add-importFile_importId-table.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.901-1-add-importFile-importText-column.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/pg/3.902-0-fix-types.sql -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch feature/#8171 updated (aadc504 -> cdce953)
by codelutin.com scm April 27, 2016

April 27, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/#8171 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from aadc504 Add missing decorators new 41e21bb Forget channelId new cdce953 Create the migration The 2 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit cdce953110ae7f43977ad5fe234dcc0239219627 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 16:29:31 2016 +0200 Create the migration commit 41e21bb14c99352d743ac8fbe097ebadc81a1969 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 16:00:41 2016 +0200 Forget channelId Summary of changes: .../workingDb/3.910-1-add-new-attributes.sql | 131 +++++++++++++++++++++ echobase-domain/src/main/xmi/echobase.zargo | Bin 97460 -> 97541 bytes 2 files changed, 131 insertions(+) create mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.910-1-add-new-attributes.sql -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 2

branch feature/8170 updated (f168873 -> da6bb29)
by codelutin.com scm April 27, 2016

April 27, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from f168873 Fix H2 dialect and fix also test databases new 6349f59 Fix abstract dao ? new 4097786 Reformat code new 0991c68 Use ToPIA persistence context close new da6bb29 Utilisation nuitonWeb 1.17 pour être compatible avec ToPIA 3 The 4 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit da6bb2954157198d8c39746c2c507d63ded96255 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Tue Apr 12 08:46:24 2016 +0200 Utilisation nuitonWeb 1.17 pour être compatible avec ToPIA 3 commit 0991c68c82e68099f386554307bda6c309c73628 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Mon Apr 11 11:58:54 2016 +0200 Use ToPIA persistence context close commit 4097786b817aa85e71300ce6ed3d018dd57afd41 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Mon Apr 11 11:58:32 2016 +0200 Reformat code commit 6349f590c339d324a6b6b3446665114314aacc7b Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Mon Apr 11 11:58:16 2016 +0200 Fix abstract dao ? Summary of changes: .../fr/ifremer/echobase/entities/EchoBaseUserTopiaDao.java | 6 +++--- .../fr/ifremer/echobase/persistence/EchoBaseEntityHelper.java | 10 ---------- .../fr/ifremer/echobase/ui/EchoBaseApplicationContext.java | 6 ++---- pom.xml | 2 +- 4 files changed, 6 insertions(+), 18 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 4

branch feature/#8171 updated (2fda67c -> aadc504)
by codelutin.com scm April 27, 2016

April 27, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/#8171 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 2fda67c on repasse sur develop pour avancer même si le point n'est pas complètement traité :(. Merge branch 'feature/8089' into develop new 4aafd84 Modify model following #8171 new 10edeab Correct model new a35a117 Finish modification for the model with tagValues and declaration new 211f806 Rename comment to comments new aadc504 Add missing decorators The 5 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit aadc504523a7631df2589a37b3c2b37e8f30f311 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 14:33:05 2016 +0200 Add missing decorators commit 211f80651a2a9fd6075869c7a8b51cae1a9a4415 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 14:32:42 2016 +0200 Rename comment to comments commit a35a1178df1107a34c5c33df0acb30ef5e16defd Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 14:05:14 2016 +0200 Finish modification for the model with tagValues and declaration commit 10edeabfb6ea007ec980ba22325ef634861ef4eb Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 12:08:56 2016 +0200 Correct model commit 4aafd84cd99bb65fdeed2c77eb8b7ec57a21cc00 Author: Julien Ruchaud <julien.ruchaud(a)debux.org> Date: Wed Apr 27 11:51:38 2016 +0200 Modify model following #8171 Summary of changes: .../echobase/persistence/EchoBaseDbMeta.java | 5 ++++- echobase-domain/src/main/xmi/echobase.properties | 19 +++++++++++++++++++ echobase-domain/src/main/xmi/echobase.zargo | Bin 89705 -> 97460 bytes .../echobase/services/service/DecoratorService.java | 12 ++++++++++++ .../service/importdata/csv/TransectImportModel.java | 2 +- .../service/importdata/csv/TransectImportRow.java | 4 ++-- 6 files changed, 38 insertions(+), 4 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 5

branch feature/#8171 created (now 2fda67c)
by codelutin.com scm April 27, 2016

April 27, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/#8171 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git at 2fda67c on repasse sur develop pour avancer même si le point n'est pas complètement traité :(. Merge branch 'feature/8089' into develop No new revisions were added by this update. -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

branch feature/8170 updated (1d25f66 -> f168873)
by codelutin.com scm April 11, 2016

April 11, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 1d25f66 clean code and do some method rename new f168873 Fix H2 dialect and fix also test databases The 1 revisions listed above as "new" are entirely new to this repository and will be described in separate emails. The revisions listed as "adds" were already present in the repository and have only been added to this reference. Detailed log of new commits: commit f168873939707f43a7734e504368cdcfc0786b18 Author: Tony CHEMIT <chemit(a)codelutin.com> Date: Mon Apr 11 09:03:26 2016 +0200 Fix H2 dialect and fix also test databases Summary of changes: .../ifremer/echobase/entities/FixedH2Dialect.java | 16 ++++++---------- .../echobase-catches-and-voyage-result.h2.db.gz | Bin 657421 -> 627546 bytes .../import-data/echobase-catches.h2.db.gz | Bin 624390 -> 594902 bytes .../import-data/echobase-commonData.h2.db.gz | Bin 179274 -> 190649 bytes .../resources/import-data/echobase-nodata.h2.db.gz | Bin 129991 -> 144051 bytes .../echobase-operation-total-samples.h2.db.gz | Bin 625297 -> 597481 bytes .../import-data/echobase-operation.h2.db.gz | Bin 320307 -> 324995 bytes 7 files changed, 6 insertions(+), 10 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 1

branch feature/8170 updated (c58fcaa -> 1d25f66)
by codelutin.com scm April 11, 2016

April 11, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from c58fcaa Fix created importLog for remove data tests adds 5a12aa1 Use ToPIA 3 configuration adds 02c9fae move H2Dialect (nothing to do in root package) adds 5191cb5 Improve migration design (use Reflections to get possible migration) + make it works with ToPIA 3 adds 85a38c9 Use truth adds 59fd870 Use new API adds 1d25f66 clean code and do some method rename No new revisions were added by this update. Summary of changes: echobase-domain/pom.xml | 40 +++++ .../fr/ifremer/echobase/entities/DriverType.java | 21 ++- .../EchoBaseInternalTopiaApplicationContext.java | 72 ++++++++ .../EchoBaseUserTopiaApplicationContext.java | 92 ++++++++-- .../echobase/{ => entities}/FixedH2Dialect.java | 6 +- .../echobase/persistence/EchoBaseEntityHelper.java | 90 +++------- .../EchobaseTopiaApplicationContexts.java | 195 --------------------- .../EchoBaseMigrationCallBackResolver.java | 45 +++-- .../MigrationCallBackForVersionSupport.java | 75 ++++++++ .../migration/MigrationCallbackSupport.java | 24 +++ ... InternalDbMigrationCallBackForVersion2_2.java} | 2 +- ...ernalDbMigrationCallBackForVersionSupport.java} | 32 ++-- .../InternalDbMigrationCallback.java} | 18 +- .../migration/internalDb/MigrationCallback.java | 47 ----- ...> WorkingDbMigrationCallBackForVersion2_2.java} | 4 +- ...WorkingDbMigrationCallBackForVersion2_5_1.java} | 2 +- ...> WorkingDbMigrationCallBackForVersion2_6.java} | 2 +- ...WorkingDbMigrationCallBackForVersion2_6_1.java} | 2 +- ...WorkingDbMigrationCallBackForVersion2_7_2.java} | 2 +- ...WorkingDbMigrationCallBackForVersion3_900.java} | 2 +- ...WorkingDbMigrationCallBackForVersion3_901.java} | 2 +- ...rkingDbMigrationCallBackForVersionSupport.java} | 68 +------ ...l.java => WorkingDbMigrationCallbackForH2.java} | 14 +- ...> WorkingDbMigrationCallbackForPostgresql.java} | 18 +- ...igration.internalDb.MigrationCallBackForVersion | 1 - ...migration.workingDb.MigrationCallBackForVersion | 7 - .../main/resources/echobase-internaldb.properties | 41 ----- .../main/resources/echobase-workingdb.properties | 41 ----- .../EmbeddedApplicationService.java | 5 +- .../services/FakeEchoBaseServiceContext.java | 4 +- .../echobase/ui/EchoBaseApplicationContext.java | 3 +- .../fr/ifremer/echobase/ui/EchoBaseSession.java | 3 +- .../echobase/ui/actions/workingDb/Connect.java | 4 +- .../ui/actions/workingDb/CreatePostgresDb.java | 10 +- pom.xml | 18 +- 35 files changed, 435 insertions(+), 577 deletions(-) create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/EchoBaseInternalTopiaApplicationContext.java rename echobase-domain/src/main/java/fr/ifremer/echobase/{ => entities}/FixedH2Dialect.java (97%) delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/EchobaseTopiaApplicationContexts.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/MigrationCallBackForVersionSupport.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/MigrationCallbackSupport.java rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/{MigrationCallBackForVersion2_2.java => InternalDbMigrationCallBackForVersion2_2.java} (97%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/{MigrationCallBackForVersion.java => InternalDbMigrationCallBackForVersionSupport.java} (60%) copy echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/{workingDb/MigrationCallBackForVersionPostgresql.java => internalDb/InternalDbMigrationCallback.java} (65%) delete mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/internalDb/MigrationCallback.java rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_2.java => WorkingDbMigrationCallBackForVersion2_2.java} (93%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_5_1.java => WorkingDbMigrationCallBackForVersion2_5_1.java} (94%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_6.java => WorkingDbMigrationCallBackForVersion2_6.java} (97%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_6_1.java => WorkingDbMigrationCallBackForVersion2_6_1.java} (94%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion2_7_2.java => WorkingDbMigrationCallBackForVersion2_7_2.java} (95%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion3_900.java => WorkingDbMigrationCallBackForVersion3_900.java} (93%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion3_901.java => WorkingDbMigrationCallBackForVersion3_901.java} (91%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersion.java => WorkingDbMigrationCallBackForVersionSupport.java} (54%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallBackForVersionPostgresql.java => WorkingDbMigrationCallbackForH2.java} (69%) rename echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/{MigrationCallback.java => WorkingDbMigrationCallbackForPostgresql.java} (61%) delete mode 100644 echobase-domain/src/main/resources/META-INF/services/fr.ifremer.echobase.persistence.migration.internalDb.MigrationCallBackForVersion delete mode 100644 echobase-domain/src/main/resources/META-INF/services/fr.ifremer.echobase.persistence.migration.workingDb.MigrationCallBackForVersion delete mode 100644 echobase-domain/src/main/resources/echobase-internaldb.properties delete mode 100644 echobase-domain/src/main/resources/echobase-workingdb.properties -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

branch feature/8170 updated (0262d40 -> c58fcaa)
by codelutin.com scm April 10, 2016

April 10, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 0262d40 Update remove data api, but tests are not ok since test databases are to be rebuild :( adds a67b9e3 Add voyage id to importlog when created adds 0d299f5 Add normal resources to be included adds c61b1a4 Improve code adds c58fcaa Fix created importLog for remove data tests No new revisions were added by this update. Summary of changes: echobase-domain/pom.xml | 7 ++ .../EchobaseTopiaApplicationContexts.java | 78 ++++++---------------- .../actions/VoyageCommonsVoyageImportAction.java | 1 + .../removedata/AbstractRemoveDataServiceTest.java | 2 + 4 files changed, 30 insertions(+), 58 deletions(-) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0

branch feature/8170 updated (5df9496 -> 0262d40)
by codelutin.com scm April 9, 2016

April 9, 2016

This is an automated email from the git hooks/post-receive script. New change to branch feature/8170 in repository echobase. See https://gitlab.nuiton.org/codelutin/echobase.git from 5df9496 Amélioration du site technique adds 75be19e up to topia and eugene snapshots adds b71258e USe new Version package adds 19d87d6 move migration files adds 5eb7c02 Improve logs adds abdc624 Review importLog model (make imported ids depends on his ImportFile + add lineNumber of each imported id) adds 8a9e58a Update migration test databases adds 2ef8fdd Add nice methods on ImportFile adds e09f24d Review import data cinematic, creating import log before do the math in order to be able to reuse imported ids from database to build the checked import file adds 0262d40 Update remove data api, but tests are not ok since test databases are to be rebuild :( No new revisions were added by this update. Summary of changes: echobase-domain/pom.xml | 8 + .../echobase/entities/ImportFileImpl.hbm.xml | 22 +++ .../ifremer/echobase/entities/ImportFileImpl.java | 30 ++++ .../ifremer/echobase/entities/ImportLogImpl.java | 35 ++++ .../EchoBaseMigrationCallBackResolver.java | 7 +- .../internalDb/MigrationCallBackForVersion.java | 7 + .../internalDb/MigrationCallBackForVersion2_2.java | 23 ++- .../migration/internalDb/MigrationCallback.java | 13 +- .../workingDb/MigrationCallBackForVersion.java | 8 + .../workingDb/MigrationCallBackForVersion2_2.java | 4 +- .../MigrationCallBackForVersion2_5_1.java | 8 +- .../workingDb/MigrationCallBackForVersion2_6.java | 14 +- .../MigrationCallBackForVersion2_6_1.java | 10 +- .../MigrationCallBackForVersion2_7_2.java | 10 +- .../MigrationCallBackForVersion3_900.java | 4 +- .../MigrationCallBackForVersion3_901.java | 36 +++++ .../migration/workingDb/MigrationCallback.java | 2 +- ...migration.workingDb.MigrationCallBackForVersion | 3 +- .../3.901-2-drop-importLog_importId-table.sql | 1 + .../3.901-3-drop-importLog-voyageId-notNull.sql | 1 + .../h2/3.901-0-add-importFile_importId-table.sql | 2 + .../3.901-1-add-importFile-importText-column.sql | 1 + .../{ => pg}/2.5.1-0-postgis-structure.sql | 0 .../workingDb/{ => pg}/2.5.1-1-postgis-view.sql | 0 .../workingDb/{ => pg}/2.6-0-postgis-view.sql | 0 .../{ => pg}/2.6.1-0-postgis-structure.sql | 0 .../workingDb/{ => pg}/2.7.2-0-postgis-view.sql | 0 echobase-domain/src/main/xmi/echobase.properties | 11 +- echobase-domain/src/main/xmi/echobase.zargo | Bin 89758 -> 90261 bytes .../services/service/UserDbPersistenceService.java | 48 +++--- .../service/importdata/ImportDataFileResult.java | 34 ++-- .../service/importdata/ImportDataResult.java | 10 +- .../service/importdata/ImportDataService.java | 180 +++++---------------- .../actions/ImportDataActionSupport.java | 75 ++++++++- .../actions/VoyageAcousticsImportAction.java | 62 +++---- .../VoyageCatchesBiometrySampleImportAction.java | 6 +- .../VoyageCatchesImportDataActionSupport.java | 8 +- .../VoyageCatchesSubSampleImportAction.java | 8 +- .../VoyageCatchesTotalSampleImportAction.java | 12 +- .../actions/VoyageCommonsTransectImportAction.java | 14 +- .../actions/VoyageCommonsTransitImportAction.java | 14 +- .../actions/VoyageCommonsVoyageImportAction.java | 9 +- .../VoyageOperationsGearMetadataImportAction.java | 4 +- .../VoyageOperationsOperationImportAction.java | 4 +- ...ageOperationsOperationMetadataImportAction.java | 4 +- .../VoyageResultsCellImportDataActionSupport.java | 4 +- .../VoyageResultsImportDataActionSupport.java | 4 +- .../VoyageResultsMapFishCellImportAction.java | 18 +-- .../VoyageResultsMapOtherCellImportAction.java | 18 +-- .../actions/VoyageResultsRegionImportAction.java | 8 +- .../VoyageResultsRegionResultsImportAction.java | 8 - .../VoyageResultsVoyageEchotypeImportAction.java | 2 +- ...oyageResultsVoyageLengthAgeKeyImportAction.java | 4 +- ...geResultsVoyageLengthWeightKeyImportAction.java | 4 +- .../contexts/ImportDataContextSupport.java | 38 ++++- .../contexts/VoyageAcousticsImportDataContext.java | 5 +- .../contexts/VoyageCatchesImportDataContext.java | 5 +- .../contexts/VoyageCommonsImportDataContext.java | 5 +- .../contexts/VoyageImportDataContextSupport.java | 13 +- .../VoyageOperationsImportDataContext.java | 5 +- .../contexts/VoyageResultsImportDataContext.java | 5 +- .../importdb/strategy/FreeImportDbStrategy.java | 13 +- .../service/removedata/RemoveDataService.java | 2 +- .../strategy/AbstractRemoveDataStrategy.java | 2 +- .../strategy/AcousticRemoveDataStrategy.java | 2 +- .../strategy/CatchesRemoveDataStrategy.java | 2 +- .../strategy/CommonAllRemoveDataStrategy.java | 2 +- .../strategy/CommonTransectRemoveDataStrategy.java | 2 +- .../strategy/CommonTransitRemoveDataStrategy.java | 2 +- .../strategy/CommonVoyageRemoveDataStrategy.java | 2 +- .../strategy/LegacyVoyageRemoveDataStrategy.java | 2 +- .../strategy/OperationRemoveDataStrategy.java | 2 +- .../strategy/ResultEsduRemoveDataStrategy.java | 2 +- .../strategy/ResultMapFishRemoveDataStrategy.java | 2 +- .../strategy/ResultMapOtherRemoveDataStrategy.java | 2 +- .../strategy/ResultRegionRemoveDataStrategy.java | 2 +- .../strategy/ResultVoyageRemoveDataStrategy.java | 2 +- .../services/MigrateImportDataDatabasesIT.java | 2 - .../importdata/AbstractImportDataServiceIT.java | 9 +- .../removedata/AbstractRemoveDataServiceTest.java | 35 ++-- .../echobase-catches-and-voyage-result.h2.db.gz | Bin 703063 -> 657421 bytes .../import-data/echobase-catches.h2.db.gz | Bin 663781 -> 624390 bytes .../import-data/echobase-commonData.h2.db.gz | Bin 179054 -> 179274 bytes .../resources/import-data/echobase-nodata.h2.db.gz | Bin 129703 -> 129991 bytes .../echobase-operation-total-samples.h2.db.gz | Bin 660514 -> 625297 bytes .../import-data/echobase-operation.h2.db.gz | Bin 323654 -> 320307 bytes pom.xml | 4 +- 87 files changed, 577 insertions(+), 414 deletions(-) create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileImpl.hbm.xml create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportFileImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/entities/ImportLogImpl.java create mode 100644 echobase-domain/src/main/java/fr/ifremer/echobase/persistence/migration/workingDb/MigrationCallBackForVersion3_901.java create mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.901-2-drop-importLog_importId-table.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/3.901-3-drop-importLog-voyageId-notNull.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.901-0-add-importFile_importId-table.sql create mode 100644 echobase-domain/src/main/resources/migration/workingDb/h2/3.901-1-add-importFile-importText-column.sql rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.5.1-0-postgis-structure.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.5.1-1-postgis-view.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.6-0-postgis-view.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.6.1-0-postgis-structure.sql (100%) rename echobase-domain/src/main/resources/migration/workingDb/{ => pg}/2.7.2-0-postgis-view.sql (100%) -- To stop receiving notification emails like this one, please contact codelutin.com SCM administrator <admin+scm(a)codelutin.com>.

1 0