September 2012 - Isis-fish-commits - mailman.cloud.codelutin.com

r3783 - trunk/src/main/java/fr/ifremer/isisfish/datastore
by echatellier＠users.forge.codelutin.com Sept. 19, 2012

Sept. 19, 2012

Author: echatellier Date: 2012-09-19 11:29:39 +0200 (Wed, 19 Sep 2012) New Revision: 3783 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3783 Log: fixes #1507 : Correction d'un probl?\195?\168me d'offset apparement Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java 2012-09-19 09:27:56 UTC (rev 3782) +++ trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java 2012-09-19 09:29:39 UTC (rev 3783) @@ -331,7 +331,7 @@ DoubleBigMappedVector data = new DoubleBigMappedVector(raf, dataOffset, dataSize); this.matrix = matrixFactory.create(name, sems, dimNames, data); - size += data.size() * 8; /* un double est sur 8 bytes*/ + size += dataSize * 8; /* un double est sur 8 bytes*/ this.size = size; } }

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r3782 - trunk/src/main/java/fr/ifremer/isisfish/datastore
by echatellier＠users.forge.codelutin.com Sept. 19, 2012

Sept. 19, 2012

Author: echatellier Date: 2012-09-19 11:27:56 +0200 (Wed, 19 Sep 2012) New Revision: 3782 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3782 Log: fixes #1507 : Correction d'un probl?\195?\168me d'offset apparement Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java 2012-09-14 13:55:29 UTC (rev 3781) +++ trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java 2012-09-19 09:27:56 UTC (rev 3782) @@ -251,7 +251,7 @@ * @return * @throws IOException */ - public static ResultHeaderMatrix read (RandomAccessFile raf, long offset) throws IOException { + public static ResultHeaderMatrix read(RandomAccessFile raf, long offset) throws IOException { raf.seek(offset); long mark = raf.readLong(); @@ -323,15 +323,15 @@ String[] dimNames = header.dimNames; List[] sems = header.sems; - long size = raf.getFilePointer(); - long dataOffset = offset + size; + long dataOffset = raf.getFilePointer(); + long size = raf.getFilePointer() - offset; int dataSize = header.dataSize; DoubleBigMappedVector data = new DoubleBigMappedVector(raf, dataOffset, dataSize); this.matrix = matrixFactory.create(name, sems, dimNames, data); - size += dataSize * 8; /* un double est sur 8 bytes*/ + size += data.size() * 8; /* un double est sur 8 bytes*/ this.size = size; } }

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r3781 - trunk
by maven-release＠users.forge.codelutin.com Sept. 14, 2012

Sept. 14, 2012

Author: maven-release Date: 2012-09-14 15:55:29 +0200 (Fri, 14 Sep 2012) New Revision: 3781 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3781 Log: [maven-release-plugin] prepare for next development iteration Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2012-09-14 13:55:22 UTC (rev 3780) +++ trunk/pom.xml 2012-09-14 13:55:29 UTC (rev 3781) @@ -11,7 +11,7 @@ <groupId>fr.ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>4.2.0.0</version> + <version>4.2.0.1-SNAPSHOT</version>  <dependencies> @@ -730,9 +730,9 @@   <scm> - <connection>scm:svn:http://svn.forge.codelutin.com/svn/isis-fish/tags/isis-fish-4.2.0.0</connection> - <developerConnection>scm:svn:http://svn.forge.codelutin.com/svn/isis-fish/tags/isis-fish-4.2.0.0</developerConnection> - <url>http://svn.forge.codelutin.com/svn/isis-fish/tags/isis-fish-4.2.0.0</url> + <connection>scm:svn:http://svn.forge.codelutin.com/svn/isis-fish/trunk</connection> + <developerConnection>scm:svn:http://svn.forge.codelutin.com/svn/isis-fish/trunk</developerConnection> + <url>http://svn.forge.codelutin.com/svn/isis-fish/trunk</url> </scm> <repositories>

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r3780 - in tags: . isis-fish-4.2.0.0
by maven-release＠users.forge.codelutin.com Sept. 14, 2012

Sept. 14, 2012

Author: maven-release Date: 2012-09-14 15:55:22 +0200 (Fri, 14 Sep 2012) New Revision: 3780 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3780 Log: [maven-release-plugin] copy for tag isis-fish-4.2.0.0 Added: tags/isis-fish-4.2.0.0/ Property changes on: tags/isis-fish-4.2.0.0 ___________________________________________________________________ Added: svn:ignore + maven.log target velocity.log .classpath .project isis-fish.ipr isis-fish.iws isis-fish.iml .settings bin nbproject Inputs_Langoustine Added: svn:mergeinfo + /branches/4.1:3601-3670

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r3779 - trunk
by maven-release＠users.forge.codelutin.com Sept. 14, 2012

Sept. 14, 2012

Author: maven-release Date: 2012-09-14 15:55:14 +0200 (Fri, 14 Sep 2012) New Revision: 3779 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3779 Log: [maven-release-plugin] prepare release isis-fish-4.2.0.0 Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2012-09-14 13:50:15 UTC (rev 3778) +++ trunk/pom.xml 2012-09-14 13:55:14 UTC (rev 3779) @@ -11,7 +11,7 @@ <groupId>fr.ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>4.2.0.0-SNAPSHOT</version> + <version>4.2.0.0</version>  <dependencies> @@ -730,9 +730,9 @@   <scm> - <connection>scm:svn:http://svn.forge.codelutin.com/svn/isis-fish/trunk</connection> - <developerConnection>scm:svn:http://svn.forge.codelutin.com/svn/isis-fish/trunk</developerConnection> - <url>http://svn.forge.codelutin.com/svn/isis-fish/trunk</url> + <connection>scm:svn:http://svn.forge.codelutin.com/svn/isis-fish/tags/isis-fish-4.2.0.0</connection> + <developerConnection>scm:svn:http://svn.forge.codelutin.com/svn/isis-fish/tags/isis-fish-4.2.0.0</developerConnection> + <url>http://svn.forge.codelutin.com/svn/isis-fish/tags/isis-fish-4.2.0.0</url> </scm> <repositories>

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r3778 - in trunk/src: main/java/fr/ifremer/isisfish/util test/java/fr/ifremer/isisfish/util
by echatellier＠users.forge.codelutin.com Sept. 14, 2012

Sept. 14, 2012

Author: echatellier Date: 2012-09-14 15:50:15 +0200 (Fri, 14 Sep 2012) New Revision: 3778 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3778 Log: Add header Modified: trunk/src/main/java/fr/ifremer/isisfish/util/BitUtil.java trunk/src/test/java/fr/ifremer/isisfish/util/BitUtilTest.java Modified: trunk/src/main/java/fr/ifremer/isisfish/util/BitUtil.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/util/BitUtil.java 2012-09-14 13:46:18 UTC (rev 3777) +++ trunk/src/main/java/fr/ifremer/isisfish/util/BitUtil.java 2012-09-14 13:50:15 UTC (rev 3778) @@ -1,9 +1,31 @@ +/* + * #%L + * IsisFish + * + * $Id: BitUtil.java 3671 2012-04-03 13:31:36Z echatellier $ + * $HeadURL$ + * %% + * Copyright (C) 2012 Ifremer, Benjamin Poussin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ + package fr.ifremer.isisfish.util; - import org.apache.commons.lang3.StringUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; /** * Quelques methodes pour manipuler les bits d'un long. Ces methodes servent pour @@ -17,8 +39,6 @@ */ public class BitUtil { - /** to use log facility, just put in your code: log.info(\"...\"); */ - static private Log log = LogFactory.getLog(BitUtil.class); /** * Converti une chaine de maximum 8 carateres en un long representant cette * chaine en ascii. Modified: trunk/src/test/java/fr/ifremer/isisfish/util/BitUtilTest.java =================================================================== --- trunk/src/test/java/fr/ifremer/isisfish/util/BitUtilTest.java 2012-09-14 13:46:18 UTC (rev 3777) +++ trunk/src/test/java/fr/ifremer/isisfish/util/BitUtilTest.java 2012-09-14 13:50:15 UTC (rev 3778) @@ -1,8 +1,30 @@ +/* + * #%L + * IsisFish + * + * $Id: BitUtil.java 3671 2012-04-03 13:31:36Z echatellier $ + * $HeadURL$ + * %% + * Copyright (C) 2012 Ifremer, Benjamin Poussin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ + package fr.ifremer.isisfish.util; - -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; import org.junit.Assert; import org.junit.Test; @@ -16,8 +38,6 @@ */ public class BitUtilTest { - /** to use log facility, just put in your code: log.info(\"...\"); */ - static private Log log = LogFactory.getLog(BitUtilTest.class); /** * Test que la conversion chaine vers long fonctionne pour la creation de mark */

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r3777 - trunk
by echatellier＠users.forge.codelutin.com Sept. 14, 2012

Sept. 14, 2012

Author: echatellier Date: 2012-09-14 15:46:18 +0200 (Fri, 14 Sep 2012) New Revision: 3777 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3777 Log: Update to nuiton-matrix 2.3.2 Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2012-09-14 08:59:15 UTC (rev 3776) +++ trunk/pom.xml 2012-09-14 13:46:18 UTC (rev 3777) @@ -62,14 +62,14 @@ <dependency> <groupId>org.nuiton.matrix</groupId> <artifactId>nuiton-matrix</artifactId> - <version>2.3.2-SNAPSHOT</version> + <version>2.3.2</version> <scope>compile</scope> </dependency> <dependency> <groupId>org.nuiton.matrix</groupId> <artifactId>nuiton-matrix-gui</artifactId> - <version>2.3.2-SNAPSHOT</version> + <version>2.3.2</version> <scope>compile</scope> </dependency>

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r3776 - trunk/src/main/java/fr/ifremer/isisfish/datastore
by echatellier＠users.forge.codelutin.com Sept. 14, 2012

Sept. 14, 2012

Author: echatellier Date: 2012-09-14 10:59:15 +0200 (Fri, 14 Sep 2012) New Revision: 3776 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3776 Log: Prepare next version Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java 2012-09-14 08:56:58 UTC (rev 3775) +++ trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java 2012-09-14 08:59:15 UTC (rev 3776) @@ -453,16 +453,16 @@ public ResultStorage getResultStorage() throws StorageException { if (resultStorage == null) { - // depuis la version 4.1.1.2 le stockage a changé de base + // depuis la version 4.2.0.0 le stockage a changé de base // de données à fichier mappe pour les resultat // mais il faut pouvoir relire les anciennes simulations SimulationParameter param = getParameter(); String isisFishVersion = param.getIsisFishVersion(); Version simuVersion = new Version(isisFishVersion); - Version version4112 = new Version(4,1,1,2); + Version version4200 = new Version(4, 2, 0, 0); // instancier un ResultStorage ou un ResultMappedStorage - if (simuVersion.before(version4112)) { + if (simuVersion.before(version4200)) { resultStorage = new ResultDatabaseStorage(this); } else { try {

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r3775 - in trunk: . src/main/java/fr/ifremer/isisfish
by echatellier＠users.forge.codelutin.com Sept. 14, 2012

Sept. 14, 2012

Author: echatellier Date: 2012-09-14 10:56:58 +0200 (Fri, 14 Sep 2012) New Revision: 3775 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3775 Log: Prepare next version Modified: trunk/pom.xml trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2012-09-11 18:06:45 UTC (rev 3774) +++ trunk/pom.xml 2012-09-14 08:56:58 UTC (rev 3775) @@ -11,7 +11,7 @@ <groupId>fr.ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>4.1.1.2-SNAPSHOT</version> + <version>4.2.0.0-SNAPSHOT</version>  <dependencies> Modified: trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2012-09-11 18:06:45 UTC (rev 3774) +++ trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2012-09-14 08:56:58 UTC (rev 3775) @@ -119,7 +119,7 @@ * migration de donnees demande automatiquement un changement de version * d'application. */ - protected final static Version version = new Version(4, 1, 1, 2); + protected final static Version version = new Version(4, 2, 0, 0); protected final static Version majorVersion = new Version(version.getNumber(0)); protected final static Version databaseVersion = new Version(

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r3774 - trunk/src/main/java/fr/ifremer/isisfish/datastore
by bpoussin＠users.forge.codelutin.com Sept. 11, 2012

Sept. 11, 2012

Author: bpoussin Date: 2012-09-11 20:06:45 +0200 (Tue, 11 Sep 2012) New Revision: 3774 Url: http://forge.codelutin.com/repositories/revision/isis-fish/3774 Log: utilisation de la representation interne de la chaine comme cle pour minimiser le nombre de chaine dans la JVM Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java 2012-09-11 17:56:00 UTC (rev 3773) +++ trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultMappedStorage.java 2012-09-11 18:06:45 UTC (rev 3774) @@ -129,6 +129,11 @@ if (result == null && internalValue != null) { result = internalValue; if (internalValue instanceof String) { + // on retrouve souvent les memes semantiques dans les matrices + // pour minimiser les chaines en memoire, on prend la representation + // interne avant de l'utiliser comme cle. + internalValue = ((String)internalValue).intern(); + result = internalValue; if (StringUtils.startsWith((String)internalValue, Month.class.getName())) { String val = StringUtils.substringAfter((String)internalValue, SEP); int monthNumber = Integer.parseInt(val); @@ -172,7 +177,10 @@ } else { result = String.valueOf(decoratedValue); } - cache.put(result, decoratedValue); + // on retrouve souvent les memes semantiques dans les matrices + // pour minimiser les chaines en memoire, on prend la representation + // interne avant de l'utiliser comme cle. + cache.put(((String)result).intern(), decoratedValue); } return result; } @@ -235,6 +243,9 @@ /** * Lit le header si possible. Si ce n'est pas possible replace le * raf a l'emplacement auquel il etait avant la tentative de lecture. + * + * Utilise pour toutes les chaines lu, la representation interne + * pour minimiser le nombre de chaine reellement en memoire * * @param raf * @return @@ -251,11 +262,11 @@ } else { result = new ResultHeaderMatrix(); result.stepValue = raf.readInt(); - result.name = raf.readUTF(); + result.name = raf.readUTF().intern(); result.dimSize = raf.readInt(); result.dimNames = new String[result.dimSize]; for (int i=0; i< result.dimSize; i++) { - result.dimNames[i] = raf.readUTF(); + result.dimNames[i] = raf.readUTF().intern(); } result.dims = new int[result.dimSize]; for (int i=0; i< result.dimSize; i++) { @@ -266,7 +277,7 @@ for (int i=0; i< result.dimSize; i++) { result.sems[i] = new ArrayList(); for (int j=0; j< result.dims[i]; j++) { - String s = raf.readUTF(); + String s = raf.readUTF().intern(); result.sems[i].add(s); } }

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