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r4421 - in trunk: doc src/main/java/fr/ifremer/isisfish src/main/java/fr/ifremer/isisfish/simulator/launcher src/main/java/fr/ifremer/isisfish/ui/config src/main/resources/i18n src/test/java/fr/ifremer/isisfish/simulator/launcher
by echatellier＠users.forge.codelutin.com Sept. 12, 2017

Sept. 12, 2017

Author: echatellier Date: 2017-09-12 12:28:35 +0200 (Tue, 12 Sep 2017) New Revision: 4421 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4421 Log: fixes #9363: Add datarmor simulation launcher Modified: trunk/doc/SimulationSSH.rst trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationJob.java trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationService.java trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java trunk/src/main/java/fr/ifremer/isisfish/ui/config/SSHLauncherConfigHandler.java trunk/src/main/java/fr/ifremer/isisfish/ui/config/SSHLauncherConfigUI.jaxx trunk/src/main/resources/i18n/isis-fish_en_GB.properties trunk/src/main/resources/i18n/isis-fish_fr_FR.properties trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SshSimulatorLauncherTest.java Modified: trunk/doc/SimulationSSH.rst =================================================================== --- trunk/doc/SimulationSSH.rst 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/doc/SimulationSSH.rst 2017-09-12 10:28:35 UTC (rev 4421) @@ -6,7 +6,7 @@ Il faut configurer les paramètres : ssh.key.file=/home/username/.ssh/id_rsa - simulation.ssh.server=caparmor.ifremer.fr\:22 + simulation.ssh.server=datarmor.ifremer.fr\:22 simulation.ssh.username=username simulation.ssh.datapath=/home/username/isis-database-3 simulation.ssh.addscripttoqueuecommand=/usr/pbs/bin/qsub Modified: trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/java/fr/ifremer/isisfish/IsisConfig.java 2017-09-12 10:28:35 UTC (rev 4421) @@ -137,7 +137,7 @@ protected static Version databaseVersion; protected static Version apiVersion; // IDEA: perhaps add this in simulation configuration to permit easy portable - // export between CapArmor and Windows world + // export between datarmor and Windows world public static final Charset charset = Charset.forName("UTF-8"); public static final String COMPRESSION_EXTENSION = ".gz"; @@ -216,7 +216,7 @@ IsisConfig.databaseVersion = Versions.extractVersion(IsisConfig.version, 0, 1); IsisConfig.apiVersion = Versions.extractVersion(IsisConfig.version, 0, 2); - setDefaultOption(Option.SIMULATOR_SSH_ISIS_HOME.key, "/home3/caparmor/poussin/isis-fish-" + apiVersion.toString()); + setDefaultOption(Option.SIMULATOR_SSH_ISIS_HOME.key, "/home3/datahome/echatell/isis-fish-" + apiVersion.toString()); } ////////////////////////////////////////////////// @@ -554,25 +554,6 @@ public void setSimulatorSshTmpPath(String sshtemppath) { setOption(Option.SIMULATOR_SSH_TMPPATH.key, sshtemppath); } - - /** - * PBS bin path directory. - * - * @return path - */ - public String getSimulatorSshPbsBinPath() { - String result = getOption(Option.SIMULATOR_SSH_PBSBINPATH.key); - return result; - } - - /** - * Change PBS bin path. - * - * @param path new path - */ - public void setSimulatorSshPbsBinPath(String path) { - setOption(Option.SIMULATOR_SSH_PBSBINPATH.key, path); - } /** * PBS qsub options (command line). @@ -1130,7 +1111,7 @@ /** prevu pour l'architecture de lancement en plugin: local, isis-server, caparmor, ... */ SIMULATOR_LAUNCHER(SimulationService.SIMULATION_LAUNCHER + ".3", n("isisfish.config.main.localSimulator.description"), InProcessSimulatorLauncher.class.getName()), SIMULATOR_LAUNCHER2(SimulationService.SIMULATION_LAUNCHER + ".1", n("isisfish.config.main.subSimulator.description"), SubProcessSimulationLauncher.class.getName()), - SIMULATOR_LAUNCHER_REMOTE(SimulationService.SIMULATION_LAUNCHER + ".2", n("isisfish.config.main.remoteCaparmor.description"), SSHSimulatorLauncher.class.getName()), + SIMULATOR_LAUNCHER_REMOTE(SimulationService.SIMULATION_LAUNCHER + ".2", n("isisfish.config.main.remoteDatarmor.description"), SSHSimulatorLauncher.class.getName()), // pour les simulations @@ -1150,31 +1131,29 @@ SIMULATOR_SUB_MAXMEMORY("simulation.sub.max.memory", n("isisfish.config.main.simulation.sub.max.memory.description"), "1024M"), /** Serveur accessible par ssh : address */ - SIMULATOR_SSH_SERVER("simulation.ssh.server", n("isisfish.config.main.simulation.ssh.server.description"), "caparmor-sftp"), + SIMULATOR_SSH_SERVER("simulation.ssh2.server", n("isisfish.config.main.simulation.ssh.server.description"), "datarmor"), /** Serveur accessible par ssh : login */ - SIMULATOR_SSH_USER_NAME("simulation.ssh.username", n("isisfish.config.main.simulation.ssh.username.description"), ""), + SIMULATOR_SSH_USER_NAME("simulation.ssh2.username", n("isisfish.config.main.simulation.ssh.username.description"), ""), /** Serveur accessible par ssh : user home directory */ - SIMULATOR_SSH_USER_HOME("simulation.ssh.userhome", n("isisfish.config.main.simulation.ssh.userhome.description"), ""), + SIMULATOR_SSH_USER_HOME("simulation.ssh2.userhome", n("isisfish.config.main.simulation.ssh.userhome.description"), ""), /** Serveur accessible par ssh : remote data path */ - SIMULATOR_SSH_DATAPATH("simulation.ssh.datapath", n("isisfish.config.main.simulation.ssh.datapath.description"), "isis-fish-4/isis-database"), + SIMULATOR_SSH_DATAPATH("simulation.ssh2.datapath", n("isisfish.config.main.simulation.ssh.datapath.description"), "isis-fish-4/isis-database"), /** Serveur accessible par ssh : remote isis home install */ - SIMULATOR_SSH_ISIS_HOME("simulation.ssh.isis.home", n("isisfish.config.main.simulation.ssh.isis.home.description"), null), + SIMULATOR_SSH_ISIS_HOME("simulation.ssh2.isis.home", n("isisfish.config.main.simulation.ssh.isis.home.description"), null), /** Serveur accessible par ssh : remote tmp path */ - SIMULATOR_SSH_TMPPATH("simulation.ssh.tmppath", n("isisfish.config.main.simulation.ssh.tmppath.description"), "isis-tmp"), + SIMULATOR_SSH_TMPPATH("simulation.ssh2.tmppath", n("isisfish.config.main.simulation.ssh.tmppath.description"), "isis-tmp"), /** Serveur accessible par SSH : emplacement de Java (full path) */ - SIMULATOR_SSH_JAVAPATH("simulation.ssh.javapath430", n("isisfish.config.main.simulation.ssh.javapath.description"), "/home3/caparmor/poussin/jdk7/bin/java"), - /** Serveur accessible par SSH : emplacement des executables pbs */ - SIMULATOR_SSH_PBSBINPATH("simulation.ssh.pbsbinpath", n("isisfish.config.main.simulation.ssh.pbsbinpath.description"), "/usr/pbs/bin"), + SIMULATOR_SSH_JAVAPATH("simulation.ssh2.javapath431", n("isisfish.config.main.simulation.ssh.javapath.description"), "/home3/datahome/echatell/jdk8/bin/java"), /** Serveur accessible par SSH : option de l'executable qsub (defaut to -m n = no mail) */ - SIMULATOR_SSH_PBSQSUBOPTIONS("simulation.ssh.pbsqsuboptions", n("isisfish.config.main.simulation.ssh.pbsqsuboptions.description"), "-m n"), + SIMULATOR_SSH_PBSQSUBOPTIONS("simulation.ssh2.pbsqsuboptions", n("isisfish.config.main.simulation.ssh.pbsqsuboptions.description"), "-m n -l mem=2GB -l walltime=01:00:00"), /** Serveur accessible par SSH : interval de check du fichier de control */ - SIMULATOR_SSH_CONTROLCHECKINTERVAL("simulation.ssh.control.check.interval", n("isisfish.config.main.simulation.ssh.control.check.interval.description"), "120"), + SIMULATOR_SSH_CONTROLCHECKINTERVAL("simulation.ssh2.control.check.interval", n("isisfish.config.main.simulation.ssh.control.check.interval.description"), "120"), /** Serveur accessible par SSH : nombre de thread au maximum a utilise simultanement */ - SIMULATOR_SSH_MAXTHREADS("simulation.ssh.max.threads", n("isisfish.config.main.simulation.ssh.max.threads.description"), "1"), - /** Serveur accessible par SSH : mémoire (Xmx) allouée pour les process java sur caparmor */ - SIMULATOR_SSH_MAXMEMORY("simulation.ssh.max.memory", n("isisfish.config.main.simulation.ssh.max.memory.description"), "2000M"), + SIMULATOR_SSH_MAXTHREADS("simulation.ssh2.max.threads", n("isisfish.config.main.simulation.ssh.max.threads.description"), "1"), + /** Serveur accessible par SSH : mémoire (Xmx) allouée pour les process java sur datarmor */ + SIMULATOR_SSH_MAXMEMORY("simulation.ssh2.max.memory", n("isisfish.config.main.simulation.ssh.max.memory.description"), "2000M"), /** Serveur accessible par SSH : la proxy commande a ajouter pour ouvrir la connexion. */ - SIMULATOR_SSH_PROXYCOMMAND("simulation.ssh.proxy.command", n("isisfish.config.main.simulation.ssh.proxy.command.description"), null), + SIMULATOR_SSH_PROXYCOMMAND("simulation.ssh2.proxy.command", n("isisfish.config.main.simulation.ssh.proxy.command.description"), null), /** Application locale (for i18n init). */ LOCALE("locale", n("isisfish.config.main.locale.description"), "fr_FR"), @@ -1194,7 +1173,7 @@ /** Database lock mode (h2).*/ DATABASE_LOCK_MODE("database.lockmode", n("isisfish.config.database.lockmode.description"), "file"), - // SSH (global, for both VCS and caparmor) + // SSH (global, for both VCS and datarmor) SSH_KEY_FILE("ssh.key.file", n("isisfish.config.ssh.key.file.description"), getUserHome() + File.separator + ".ssh" + File.separator + "isis_rsa"), DATABASE_DIRECTORY("database.directory", n("isisfish.config.vcs.localDatabasePath.description"), "${isis.home.directory}" + File.separator + "isis-database"), Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2017-09-12 10:28:35 UTC (rev 4421) @@ -75,7 +75,7 @@ * * Isis-Fish must be installed on remote server. * - * Caparmor file layout ($i = plan/as increment) : + * Datarmor file layout ($i = plan/as increment) : * <ul> * <li>$ISIS-TMP/simulation-$id-preparation.zip</li> * <li>$ISIS-TMP/simulation-$id-prescript.bsh</li> @@ -864,7 +864,7 @@ } /** - * Remove all {@code $ISIS-TMP/simulation-$id-*} files on caparmor. + * Remove all {@code $ISIS-TMP/simulation-$id-*} files on datarmor. * * @param session valid opened ssh session * @param control simulation control @@ -1126,7 +1126,7 @@ // command to : // - add script in qsub queue String remoteFilenameId = getRemoteTempDirectory() + "simulation-" + simulationId + "-pbs.id"; - String command = IsisFish.config.getSimulatorSshPbsBinPath() + "/qsub"; + String command = "qsub"; // add qsub options String qsubOptions = IsisFish.config.getSimulatorSshPbsQsubOptions(); @@ -1173,7 +1173,7 @@ // command to : String remoteFilenameId = getRemoteTempDirectory() + "simulation-" + simulationId + "-pbs.id"; - String command = IsisFish.config.getSimulatorSshPbsBinPath() + "/qdel `cat \"" + remoteFilenameId + "\"`"; + String command = "qdel `cat \"" + remoteFilenameId + "\"`"; // and delete simulation //command += " && rm -rf \"" + IsisFish.config.getSimulatorSshDataPath() + "/simulations/" + simulationId + "\""; @@ -1193,7 +1193,7 @@ /** * Get remote directory absolute path. * - * Don't use {@link java.io.File#separator} here, caparmor is always unix. + * Don't use {@link java.io.File#separator} here, datarmor is always unix. * * @return remote temp directory path */ Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationJob.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationJob.java 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationJob.java 2017-09-12 10:28:35 UTC (rev 4421) @@ -222,7 +222,7 @@ SimulationJob subjob = i.next(); subjob.setLauncher(getLauncher()); // c'est bloquant seulement le temps du lancement - // (envoie sur caparmor par exemple) + // (envoie sur datarmor par exemple) // l'appel peut ensuite passer alors que la simulation // n'a pas effectivement demarré subjob.run(); Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationService.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationService.java 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationService.java 2017-09-12 10:28:35 UTC (rev 4421) @@ -676,7 +676,7 @@ // il faut bien penser a supprimer le launcher pour qu'un autre executor // puisse y mettre le sien. // FIXME: est ce le bon choix si l'utilisateur avait force un launcher particulier, ne faudrait t'il pas prevenir l'utilisateur ? - // FIXME: disabled since caparmor is not our friend. Retry on caparmor in the limit of 50 errors + // FIXME: disabled since datarmor is not our friend. Retry on datarmor in the limit of 50 errors //job.setLauncher(null); try { // not resubmit immediatly, wait some time (max 10 min and about 4,2 hours in total) Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulatorLauncher.java 2017-09-12 10:28:35 UTC (rev 4421) @@ -32,7 +32,7 @@ /** * Interface devant etre implantée par les classes souhaitants etre utilisees - * comme plugin de simulation (InProcess, SubProcess, CapArmor, ...) + * comme plugin de simulation (InProcess, SubProcess, Datarmor, ...) * * @author poussin * @version $Revision$ Modified: trunk/src/main/java/fr/ifremer/isisfish/ui/config/SSHLauncherConfigHandler.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/ui/config/SSHLauncherConfigHandler.java 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/java/fr/ifremer/isisfish/ui/config/SSHLauncherConfigHandler.java 2017-09-12 10:28:35 UTC (rev 4421) @@ -77,7 +77,6 @@ protected String currentSSHIsisHome; protected String currentSSHTempPath; protected String currentSSHJavaPath; - protected String currentSSHPbsBinPath; protected String currentSSHPbsQsubOptions; protected String currentSSHMaxThreads; protected String currentSSHMaxMemory; @@ -112,7 +111,6 @@ configUI.getSshIsisHomeField().setText(IsisFish.config.getSimulatorSshIsisHome()); configUI.getSshTemppathField().setText(IsisFish.config.getSimulatorSshTmpPath()); configUI.getSshJavaPathField().setText(IsisFish.config.getSimulatorSshJavaPath()); - configUI.getSshPbsBinPathField().setText(IsisFish.config.getSimulatorSshPbsBinPath()); configUI.getSshPbsQsubOptionsField().setText(IsisFish.config.getSimulatorSshPbsQsubOptions()); configUI.getSshControlIntervalField().setText(String.valueOf(IsisFish.config.getSimulatorSshControlCheckInterval())); configUI.getSshMaxThreadsField().setText(String.valueOf(IsisFish.config.getSimulatorSshMaxThreads())); @@ -197,14 +195,6 @@ setColor(false, configUI.getSshJavaPathField()); } - currentSSHPbsBinPath = configUI.getSshPbsBinPathField().getText() - .trim(); - if (currentSSHPbsBinPath.isEmpty()) { - setColor(true, configUI.getSshPbsBinPathField()); - } else { - setColor(false, configUI.getSshPbsBinPathField()); - } - // currentSSHPbsQsubOptions currentSSHPbsQsubOptions = configUI.getSshPbsQsubOptionsField().getText().trim(); @@ -243,7 +233,6 @@ IsisFish.config.setSimulatorSshIsisHome(currentSSHIsisHome); IsisFish.config.setSimulatorSshTmpPath(currentSSHTempPath); IsisFish.config.setSimulatorSshJavaPath(currentSSHJavaPath); - IsisFish.config.setSimulatorSshPbsBinPath(currentSSHPbsBinPath); IsisFish.config.setSimulatorSshPbsQsubOptions(currentSSHPbsQsubOptions); IsisFish.config.setSimulatorSshControlCheckInterval(Integer.parseInt(currentSSHControlInterval)); IsisFish.config.setSimulatorSshMaxThreads(Integer.parseInt(currentSSHMaxThreads)); Modified: trunk/src/main/java/fr/ifremer/isisfish/ui/config/SSHLauncherConfigUI.jaxx =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/ui/config/SSHLauncherConfigUI.jaxx 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/java/fr/ifremer/isisfish/ui/config/SSHLauncherConfigUI.jaxx 2017-09-12 10:28:35 UTC (rev 4421) @@ -5,7 +5,7 @@ $Id$ $HeadURL$ %% - Copyright (C) 2009 - 2014 Ifremer, CodeLutin + Copyright (C) 2009 - 2017 Ifremer, CodeLutin %% This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as @@ -128,17 +128,6 @@ </row> <row fill='horizontal'> <cell> - <JLabel id='sshPbsBinPathLabel' text='isisfish.config.main.simulation.ssh.pbsbinpath' - toolTipText='isisfish.config.main.simulation.ssh.pbsbinpath.description' /> - </cell> - <cell> - <JTextField id='sshPbsBinPathField' - toolTipText='isisfish.config.main.simulation.ssh.pbsbinpath.description' - onKeyReleased="handler.doCheck()" /> - </cell> - </row> - <row fill='horizontal'> - <cell> <JLabel id='sshPbsQsubOptionsLabel' text='isisfish.config.main.simulation.ssh.pbsqsuboptions' toolTipText='isisfish.config.main.simulation.ssh.pbsqsuboptions.description' /> </cell> Modified: trunk/src/main/resources/i18n/isis-fish_en_GB.properties =================================================================== --- trunk/src/main/resources/i18n/isis-fish_en_GB.properties 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/resources/i18n/isis-fish_en_GB.properties 2017-09-12 10:28:35 UTC (rev 4421) @@ -202,7 +202,7 @@ isisfish.config.main.performcron.description=Perform all task registered in cron service isisfish.config.main.performmigration.description=Perform data migration isisfish.config.main.performvcsupdate.description=Perform vcs update -isisfish.config.main.remoteCaparmor.description=Remote simulator launcher name +isisfish.config.main.remoteDatarmor.description=Remote simulator launcher name isisfish.config.main.script.autoconfig.description=Display a dialog to force script configuration isisfish.config.main.simulation.in.max.threads.description=Max threads count in current process isisfish.config.main.simulation.ssh.control.check.interval=Control check interval (seconds) @@ -212,7 +212,7 @@ isisfish.config.main.simulation.ssh.isis.home=ISIS-Fish home isisfish.config.main.simulation.ssh.isis.home.description=ISIS-Fish installation directory isisfish.config.main.simulation.ssh.javapath=Java path -isisfish.config.main.simulation.ssh.javapath.description=Java location on remote server (full path or relative to $PATH, by default value is caparmor configuration) +isisfish.config.main.simulation.ssh.javapath.description=Java location on remote server (full path or relative to $PATH, by default value is datarmor configuration) isisfish.config.main.simulation.ssh.max.memory=Ssh simulation Xmx allocated memory isisfish.config.main.simulation.ssh.max.memory.description=Ssh simulation Xmx allocated memory isisfish.config.main.simulation.ssh.max.threads=SSH threads count @@ -931,7 +931,7 @@ isisfish.simulation.message.analyzeResults=Results analysis isisfish.simulation.message.lookingforlast=Looking for last simulation isisfish.simulation.message.scriptscompilation=Rules and scripts compilation -isisfish.simulation.remote.message.connection=Connecting to Caparmor +isisfish.simulation.remote.message.connection=Connecting to Datarmor isisfish.simulation.remote.message.deletingfiles=Deleting simulation files isisfish.simulation.remote.message.downloadresults=Downloading results isisfish.simulation.remote.message.upload=Uploading simulation @@ -952,7 +952,7 @@ isisfish.simulator.configuration.r.testok=R successfully tested \! isisfish.simulator.configuration.r.title=R Configuration isisfish.simulator.launcher.inprocess=in current process -isisfish.simulator.launcher.remote=on Caparmor server +isisfish.simulator.launcher.remote=on Datarmor server isisfish.simulator.launcher.subprocess=in subprocess isisfish.simulator.simulaction.badid=Can't start simulation, bad id\: %s isisfish.simulator.ssh.configuration.connecting=Connection... @@ -960,7 +960,7 @@ isisfish.simulator.ssh.configuration.connection=Connection information isisfish.simulator.ssh.configuration.connectionerror=Can't connect isisfish.simulator.ssh.configuration.connectionok=Connection successfull -isisfish.simulator.ssh.configuration.environment=Caparmor configuration +isisfish.simulator.ssh.configuration.environment=Datarmor configuration isisfish.simulator.ssh.configuration.freespace=Used space disk \: isisfish.simulator.ssh.configuration.freespace.confirmdelete=Warning, deleting folder '%s' is irreversible.\nDo you confirm the deletion of contents ? isisfish.simulator.ssh.configuration.freespace.label=Size of %s \: %s @@ -968,7 +968,7 @@ isisfish.simulator.ssh.configuration.keygenerate=Generate isisfish.simulator.ssh.configuration.status=Status isisfish.simulator.ssh.configuration.test=Test configuration -isisfish.simulator.ssh.configuration.title=Caparmor launcher configuration +isisfish.simulator.ssh.configuration.title=Datarmor launcher configuration isisfish.simulator.subprocess.readoutput.error= isisfish.species.age=Age isisfish.species.cee=CEE @@ -1075,7 +1075,7 @@ isisfish.welcome.menu.close=Close isisfish.welcome.menu.configuration=Configuration isisfish.welcome.menu.configuration.r=R configuration -isisfish.welcome.menu.configuration.sshlauncher=Caparmor configuration +isisfish.welcome.menu.configuration.sshlauncher=Datarmor configuration isisfish.welcome.menu.configuration.vcs=VCS configuration isisfish.welcome.menu.file=File isisfish.welcome.menu.frame=Window Modified: trunk/src/main/resources/i18n/isis-fish_fr_FR.properties =================================================================== --- trunk/src/main/resources/i18n/isis-fish_fr_FR.properties 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/main/resources/i18n/isis-fish_fr_FR.properties 2017-09-12 10:28:35 UTC (rev 4421) @@ -202,7 +202,7 @@ isisfish.config.main.performcron.description=Démarre toutes les tâches définies dans le service cron isisfish.config.main.performmigration.description=Migre les données isisfish.config.main.performvcsupdate.description=Met à jour le dépôt VCS -isisfish.config.main.remoteCaparmor.description=Nom du lanceur de simulation distante +isisfish.config.main.remoteDatarmor.description=Nom du lanceur de simulation distante isisfish.config.main.script.autoconfig.description=Affiche une fenêtre pour forcer la configuration des scripts isisfish.config.main.simulation.in.max.threads.description=Nombre de thread maximum dans le processus courant isisfish.config.main.simulation.ssh.control.check.interval=Vérification de la progression (secondes) @@ -212,7 +212,7 @@ isisfish.config.main.simulation.ssh.isis.home=Installation d'ISIS-Fish isisfish.config.main.simulation.ssh.isis.home.description=Emplacement d'installation d'ISIS-Fish sur le serveur isisfish.config.main.simulation.ssh.javapath=Emplacement de java -isisfish.config.main.simulation.ssh.javapath.description=Emplacement de java sur le serveur (chemin total, ou relatif au $PATH, par défaut la valeur est celle de caparmor) +isisfish.config.main.simulation.ssh.javapath.description=Emplacement de java sur le serveur (chemin total, ou relatif au $PATH, par défaut la valeur est celle de datarmor) isisfish.config.main.simulation.ssh.max.memory=Quantité de mémoire allouée isisfish.config.main.simulation.ssh.max.memory.description=Quantité de mémoire maximum allouée (Xmx) isisfish.config.main.simulation.ssh.max.threads=Nombre de thread SSH @@ -931,7 +931,7 @@ isisfish.simulation.message.analyzeResults=Analyse des résultats isisfish.simulation.message.lookingforlast=Recherche de la dernière simulation isisfish.simulation.message.scriptscompilation=Compilation des scripts -isisfish.simulation.remote.message.connection=Connexion à Caparmor +isisfish.simulation.remote.message.connection=Connexion à Datarmor isisfish.simulation.remote.message.deletingfiles=Suppression des fichiers de simulation isisfish.simulation.remote.message.downloadresults=Téléchargement des résultats isisfish.simulation.remote.message.upload=Upload de la simulation @@ -952,7 +952,7 @@ isisfish.simulator.configuration.r.testok=R testé avec succès \! isisfish.simulator.configuration.r.title=Configuration de R isisfish.simulator.launcher.inprocess=dans le même processus -isisfish.simulator.launcher.remote=sur le serveur Caparmor +isisfish.simulator.launcher.remote=sur le serveur Datarmor isisfish.simulator.launcher.subprocess=dans un sous processus isisfish.simulator.simulaction.badid=Impossible de lancer la simulation '%s' \: l'identifiant existe déjà \! isisfish.simulator.ssh.configuration.connecting=Connexion en cours @@ -960,7 +960,7 @@ isisfish.simulator.ssh.configuration.connection=Information de connexion isisfish.simulator.ssh.configuration.connectionerror=Connexion impossible (%s) isisfish.simulator.ssh.configuration.connectionok=Connecté avec succès -isisfish.simulator.ssh.configuration.environment=Configuration sur Caparmor +isisfish.simulator.ssh.configuration.environment=Configuration sur Datarmor isisfish.simulator.ssh.configuration.freespace=Espace disque utilisé \: isisfish.simulator.ssh.configuration.freespace.confirmdelete=Attention, la suppression du dossier '%s' est irréversible.\nConfirmez-vous la suppression de son contenu ? isisfish.simulator.ssh.configuration.freespace.label=Taille de %s \: %s @@ -968,7 +968,7 @@ isisfish.simulator.ssh.configuration.keygenerate=Générer isisfish.simulator.ssh.configuration.status=Statut isisfish.simulator.ssh.configuration.test=Tester la configuration -isisfish.simulator.ssh.configuration.title=Configuration du lanceur Caparmor +isisfish.simulator.ssh.configuration.title=Configuration du lanceur Datarmor isisfish.simulator.subprocess.readoutput.error= isisfish.species.age=Age isisfish.species.cee=CEE @@ -1075,7 +1075,7 @@ isisfish.welcome.menu.close=Fermer isisfish.welcome.menu.configuration=Configuration isisfish.welcome.menu.configuration.r=Configuration R -isisfish.welcome.menu.configuration.sshlauncher=Configuration Caparmor +isisfish.welcome.menu.configuration.sshlauncher=Configuration Datarmor isisfish.welcome.menu.configuration.vcs=Configuration vcs isisfish.welcome.menu.file=Fichier isisfish.welcome.menu.frame=Fenêtre Modified: trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SshSimulatorLauncherTest.java =================================================================== --- trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SshSimulatorLauncherTest.java 2017-08-18 15:48:57 UTC (rev 4420) +++ trunk/src/test/java/fr/ifremer/isisfish/simulator/launcher/SshSimulatorLauncherTest.java 2017-09-12 10:28:35 UTC (rev 4421) @@ -5,7 +5,7 @@ * $Id$ * $HeadURL$ * %% - * Copyright (C) 2008 - 2012 Ifremer, Code Lutin + * Copyright (C) 2008 - 2017 Ifremer, Code Lutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -52,7 +52,7 @@ private static Log log = LogFactory.getLog(SshSimulatorLauncherTest.class); /** - * Test l'instantiation du script qsub (caparmor). + * Test l'instantiation du script qsub (datarmor). * * Le script contient plusieurs variables qui doivent être remplacées. * @@ -85,7 +85,7 @@ Assert.assertTrue("String \"" + simulationResultZip + "\" not found in template", content.indexOf(simulationResultZip) > 0); Assert.assertTrue("String \"" + simulationPreScript + "\" not found in template", content.indexOf(simulationPreScript) > 0); Assert.assertTrue("Action --simulateRemotellyWithPreScript not on script", content.indexOf(" --simulateRemotellyWithPreScript ") > 0); - Assert.assertTrue("Remote Java path not found in template", content.indexOf("/home3/caparmor/poussin/jdk7/bin/java") > 0); + Assert.assertTrue("Remote Java path not found in template", content.indexOf("/home3/datahome/echatell/jdk8/bin/java") > 0); // isis location Assert.assertTrue("String \"" + isisHome + "\" not found in template", content.indexOf(isisHome) > 0); @@ -95,7 +95,7 @@ } /** - * Test l'instantiation du script qsub (caparmor). + * Test l'instantiation du script qsub (datarmor). * * Test sans script de pre simu. *

1 0

r4420 - trunk/src/main/java/fr/ifremer/isisfish/datastore
by bpoussin＠users.forge.codelutin.com Aug. 18, 2017

Aug. 18, 2017

Author: bpoussin Date: 2017-08-18 17:48:57 +0200 (Fri, 18 Aug 2017) New Revision: 4420 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4420 Log: fixes #9339: NPE sur une matrice r?\195?\169cup?\195?\169r?\195?\169 depuis le ResultStorage en dehors d'une simulation Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultStorageAbstract.java Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultStorageAbstract.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultStorageAbstract.java 2017-08-18 10:10:01 UTC (rev 4419) +++ trunk/src/main/java/fr/ifremer/isisfish/datastore/ResultStorageAbstract.java 2017-08-18 15:48:57 UTC (rev 4420) @@ -160,10 +160,9 @@ if (mat != null) { // on decore la matrice resultat au dernier moment, tous les calcules // ce font avec les strings - tx = getTx(tx); + EntitySemanticsDecorator.EntityProvider provider = getProvider(tx); result = new MatrixSemanticsDecorator(mat, - new EntitySemanticsDecorator( - new EntitySemanticsDecorator.EntityTxProvider(tx))); + new EntitySemanticsDecorator(provider)); } return result; } @@ -623,9 +622,7 @@ * @param tx * @return */ - protected TopiaContext getTx(TopiaContext tx) { - TopiaContext result = tx; - + protected EntitySemanticsDecorator.EntityProvider getProvider(TopiaContext tx) { // FIXME echatellier 20140811 : when reruninig again export outside of simulation // no simulation is registred into SimulationContext thread local, so this // method return no transaction @@ -635,12 +632,17 @@ // pour recuperer la tx de la simulation if (simulation == SimulationContext.get().getSimulationStorage()) { try { - result = SimulationContext.get().getDB(); + tx = SimulationContext.get().getDB(); } catch (TopiaException eee) { throw new IsisFishRuntimeException("Can't get database from SimulationContext", eee); } } } + + EntitySemanticsDecorator.EntityProvider result = null; + if (tx != null) { + result = new EntitySemanticsDecorator.EntityTxProvider(tx); + } return result; }

1 0

r4419 - in trunk/src/main/java/fr/ifremer/isisfish: datastore simulator simulator/launcher
by bpoussin＠users.forge.codelutin.com Aug. 18, 2017

Aug. 18, 2017

Author: bpoussin Date: 2017-08-18 12:10:01 +0200 (Fri, 18 Aug 2017) New Revision: 4419 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4419 Log: fixes #9334: Probl?\195?\168me lors de l'utilisation de script d'optimisation (lock de la base) Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/IsisH2Config.java trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java trunk/src/main/java/fr/ifremer/isisfish/simulator/OptimizationContext.java trunk/src/main/java/fr/ifremer/isisfish/simulator/OptimizationContextInternal.java trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/OptimizationPrepareJob.java Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/IsisH2Config.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/datastore/IsisH2Config.java 2017-05-29 17:40:23 UTC (rev 4418) +++ trunk/src/main/java/fr/ifremer/isisfish/datastore/IsisH2Config.java 2017-08-18 10:10:01 UTC (rev 4419) @@ -57,7 +57,7 @@ /** Set in static field to be overridden by tests. Default to swing callback. */ protected static Class<?> databaseMigrationClass = DatabaseMigrationClass.class; - protected static final String COMMON_URL = + protected static final String COMMON_URL = // Sets the default lock timeout (in milliseconds) in this database // that is used for the new sessions. "DEFAULT_LOCK_TIMEOUT=1000;" + @@ -89,6 +89,13 @@ // changes is disabled (default), 2: logging of both data and index // changes are enabled "LOG=1;" + + // permet de prevenir le bug lorsqu'on utilise un script d'optimisation + // la simulation est deja creer (pour etre configurable par le script) + // et on dezippe dessus la simulation a faire si la simulation se fait + // sur la meme machine. Normalement la simulation devrait etre ferme + // fr.ifremer.isisfish.simulator.launcher.OptimizationPrepareJob.run#118 + // mais certaine fois non (pourquoi ???) + "AUTO_SERVER=TRUE;" + COMMON_URL; protected static final String H2_MEM_URL = Modified: trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java 2017-05-29 17:40:23 UTC (rev 4418) +++ trunk/src/main/java/fr/ifremer/isisfish/datastore/SimulationStorage.java 2017-08-18 10:10:01 UTC (rev 4419) @@ -808,6 +808,8 @@ File data = result.getDataBackupFile(); if (data.exists()) { TopiaContext tx = result.getStorage().beginTransaction(); + // force to have clean database before import +// tx.executeSQL("DROP ALL OBJECTS;"); tx.restore(data); tx.commitTransaction(); result.closeStorage(); Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/OptimizationContext.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/OptimizationContext.java 2017-05-29 17:40:23 UTC (rev 4418) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/OptimizationContext.java 2017-08-18 10:10:01 UTC (rev 4419) @@ -36,6 +36,8 @@ */ public interface OptimizationContext extends SimulationPlanContext { + String TEMP_PREFIX = "__tmp__"; + /** * Return the current generation. * 0 for no generation (in firstGeneration) Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/OptimizationContextInternal.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/OptimizationContextInternal.java 2017-05-29 17:40:23 UTC (rev 4418) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/OptimizationContextInternal.java 2017-08-18 10:10:01 UTC (rev 4419) @@ -71,6 +71,9 @@ * @return null or empty collection if no more simulation to do */ public List<SimulationStorage> clearNextSimulation() { + // /!\ la collection renvoyee est modifiee par l'appelant (OptimizationPrepareJob) + // les simulations ancienne et temporaire on ete supprimer + // et remplacer par les simulations qui ont ete faites List<SimulationStorage> result = nextSimulations; if (CollectionUtils.isNotEmpty(result)) { @@ -96,7 +99,7 @@ @Override public SimulationStorage newSimulation() { try { - String simId = id + "_" + number; + String simId = TEMP_PREFIX + id + "_" + number; SimulationParameter childParam = param.copy(); childParam.setSimulationPlanNumber(number); childParam.setOptimizationGeneration(generations.size()); Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/OptimizationPrepareJob.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/OptimizationPrepareJob.java 2017-05-29 17:40:23 UTC (rev 4418) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/OptimizationPrepareJob.java 2017-08-18 10:10:01 UTC (rev 4419) @@ -33,8 +33,10 @@ import java.io.IOException; import java.util.ArrayList; import java.util.List; +import java.util.ListIterator; import java.util.Map; +import fr.ifremer.isisfish.simulator.*; import org.apache.commons.collections4.CollectionUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -44,11 +46,7 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.entities.Observation; import fr.ifremer.isisfish.export.ExportInfo; -import fr.ifremer.isisfish.simulator.Objective; -import fr.ifremer.isisfish.simulator.Optimization; -import fr.ifremer.isisfish.simulator.OptimizationContextInternal; -import fr.ifremer.isisfish.simulator.SimulationControl; -import fr.ifremer.isisfish.simulator.SimulationParameter; + import java.io.BufferedReader; import java.io.FileInputStream; import java.io.FileReader; @@ -110,12 +108,17 @@ List<SimulationStorage> sims = optimizationContext.clearNextSimulation(); while (!exception && !control.isStopSimulationRequest() && CollectionUtils.isNotEmpty(sims)) { + List<String> simulationNames = new ArrayList<>(sims.size()); for (SimulationStorage s : sims) { if (!exception && !control.isStopSimulationRequest()) { - String simId = s.getName(); + // on renomme en la version final + String simId = s.getName().replaceFirst(OptimizationContext.TEMP_PREFIX, ""); + simulationNames.add(simId); File zip = s.createZip(); + // on ferme et on supprime les simulations temporaire utilisee pour la configuration s.closeStorage(); + s.delete(false); SimulationParameter childParam = s.getParameter(); int childNumber = childParam.getSimulationPlanNumber(); @@ -147,6 +150,14 @@ // FIXME echatellier 20140418 exception is always false, it's value never changes if (!exception && !control.isStopSimulationRequest()) { + // tous les simulations ont ete faites, on recreer les storages avec les nouveaux nom en local + // /!\ on modifie la collection qu'on nous a envoyer, on utilise un effet de bord + // le probleme est que la simulation qui etait precedement dans la collection n'est plus valide + sims.clear(); + for (String name : simulationNames) { + sims.add(SimulationStorage.getSimulation(name)); + } + optimization.endSimulation(optimizationContext); optimizationContext.incGenerationNumber(); // close current generation simulations

1 0

r4418 - trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher
by bpoussin＠users.forge.codelutin.com May 29, 2017

May 29, 2017

Author: bpoussin Date: 2017-05-29 19:40:23 +0200 (Mon, 29 May 2017) New Revision: 4418 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4418 Log: fixes #9204: Probl?\195?\168me d'interface lorsque l'estimation de la dur?\195?\169e restante pour la simulation est n?\195?\169gative Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTableModel.java Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTableModel.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTableModel.java 2017-05-18 07:49:57 UTC (rev 4417) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SimulationServiceTableModel.java 2017-05-29 17:40:23 UTC (rev 4418) @@ -287,8 +287,13 @@ } long milli = (long)Unit.Time.s.convertTo(Unit.Time.milli, time); - String restTime = DurationFormatUtils.formatDurationHMS(milli); - + String restTime; + if (milli >= 0) { + restTime = DurationFormatUtils.formatDurationHMS(milli); + } else { + restTime = ""; + } + pb.setMaximum(max); pb.setValue(value);

1 0

r4417 - branches/isis-fish-4.4.0.x
by echatellier＠users.forge.codelutin.com May 18, 2017

May 18, 2017

Author: echatellier Date: 2017-05-18 09:49:57 +0200 (Thu, 18 May 2017) New Revision: 4417 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4417 Log: Add jrs331 api Modified: branches/isis-fish-4.4.0.x/pom.xml Modified: branches/isis-fish-4.4.0.x/pom.xml =================================================================== --- branches/isis-fish-4.4.0.x/pom.xml 2017-05-17 15:50:48 UTC (rev 4416) +++ branches/isis-fish-4.4.0.x/pom.xml 2017-05-18 07:49:57 UTC (rev 4417) @@ -359,6 +359,13 @@ </dependency>  + <dependency> + <groupId>org.improving</groupId> + <artifactId>jsr331-api</artifactId> + <version>2.7.0-1</version> + <scope>runtime</scope> + </dependency> +  <dependency> <groupId>org.tmatesoft.svnkit</groupId>

1 0

r4416 - branches/isis-fish-4.4.0.x
by echatellier＠users.forge.codelutin.com May 17, 2017

May 17, 2017

Author: echatellier Date: 2017-05-17 17:50:48 +0200 (Wed, 17 May 2017) New Revision: 4416 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4416 Log: wtf Removed: branches/isis-fish-4.4.0.x/isis-fish-4.4.0.2/

1 0

r4415 - branches/isis-fish-4.4.0.x
by echatellier＠users.forge.codelutin.com May 17, 2017

May 17, 2017

Author: echatellier Date: 2017-05-17 17:38:08 +0200 (Wed, 17 May 2017) New Revision: 4415 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4415 Log: New branch fro maintenance Added: branches/isis-fish-4.4.0.x/isis-fish-4.4.0.2/

1 0

r4414 - trunk
by echatellier＠users.forge.codelutin.com March 27, 2017

March 27, 2017

Author: echatellier Date: 2017-03-27 11:58:27 +0200 (Mon, 27 Mar 2017) New Revision: 4414 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4414 Log: refs #8733: Export de tous les param?\195?\168tres pour illustrer un papier Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2017-03-27 09:35:09 UTC (rev 4413) +++ trunk/pom.xml 2017-03-27 09:58:27 UTC (rev 4414) @@ -373,7 +373,7 @@ <dependency> <groupId>org.freemarker</groupId> <artifactId>freemarker</artifactId> - <version>2.3.26-incubating</version> + <version>2.3.25-incubating</version> <scope>compile</scope> </dependency>

1 0

r4413 - in trunk: . src/main src/main/java/fr/ifremer/isisfish/entities src/main/java/fr/ifremer/isisfish/simulator/launcher src/main/java/fr/ifremer/isisfish/ui/input src/main/javascript src/main/javascript/templates src/main/javascript/templates/web src/main/resources/i18n
by echatellier＠users.forge.codelutin.com March 27, 2017

March 27, 2017

Author: echatellier Date: 2017-03-27 11:35:09 +0200 (Mon, 27 Mar 2017) New Revision: 4413 Url: http://forge.codelutin.com/projects/isis-fish/repository/revisions/4413 Log: refs #8733: Export de tous les param?\195?\168tres pour illustrer un papier Added: trunk/.babelrc trunk/package.json trunk/src/main/javascript/ trunk/src/main/javascript/templates/ trunk/src/main/javascript/templates/web/ trunk/src/main/javascript/templates/web/region-web.html Modified: trunk/ trunk/pom.xml trunk/src/main/java/fr/ifremer/isisfish/entities/RegionExportJson.java trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputHandler.java trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputUI.jaxx trunk/src/main/resources/i18n/isis-fish_en_GB.properties trunk/src/main/resources/i18n/isis-fish_fr_FR.properties Index: trunk =================================================================== --- trunk 2017-03-17 16:43:07 UTC (rev 4412) +++ trunk 2017-03-27 09:35:09 UTC (rev 4413) Property changes on: trunk ___________________________________________________________________ Modified: svn:ignore ## -13,3 +13,7 ## .idea build .gradle +node +node_modules +etc +npm-debug.log Added: trunk/.babelrc =================================================================== --- trunk/.babelrc (rev 0) +++ trunk/.babelrc 2017-03-27 09:35:09 UTC (rev 4413) @@ -0,0 +1,5 @@ +{ + "presets": [ + "env" + ] +} \ No newline at end of file Added: trunk/package.json =================================================================== --- trunk/package.json (rev 0) +++ trunk/package.json 2017-03-27 09:35:09 UTC (rev 4413) @@ -0,0 +1,10 @@ +{ + "devDependencies": { + "babel-cli": "^6.24.0", + "babel-preset-env": "^1.2.2", + "babel-html": "^0.5.0" + }, + "scripts": { + "build": "babel-html -s src/main/javascript -d target/classes" + } +} Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2017-03-17 16:43:07 UTC (rev 4412) +++ trunk/pom.xml 2017-03-27 09:35:09 UTC (rev 4413) @@ -12,7 +12,7 @@ <groupId>fr.ifremer</groupId> <artifactId>isis-fish</artifactId> <version>4.4.1.0-SNAPSHOT</version> - +  <dependencies> @@ -373,7 +373,7 @@ <dependency> <groupId>org.freemarker</groupId> <artifactId>freemarker</artifactId> - <version>2.3.25-incubating</version> + <version>2.3.26-incubating</version> <scope>compile</scope> </dependency> @@ -608,75 +608,6 @@ </resource> </resources> - <pluginManagement> - <plugins> - <plugin> - <groupId>org.nuiton.eugene</groupId> - <artifactId>eugene-maven-plugin</artifactId> - <version>2.14</version> - </plugin> - - <plugin> - <groupId>org.nuiton.jaxx</groupId> - <artifactId>jaxx-maven-plugin</artifactId> - <version>${jaxxVersion}</version> - </plugin> - - <plugin> - <groupId>org.nuiton.i18n</groupId> - <artifactId>i18n-maven-plugin</artifactId> - <version>${nuitonI18nVersion}</version> - </plugin> - - <plugin> - <artifactId>maven-jar-plugin</artifactId> - <configuration> - <archive> - <manifest> - <addClasspath>true</addClasspath> - <mainClass>fr.ifremer.isisfish.IsisFish</mainClass> - <classpathPrefix>lib/</classpathPrefix> - </manifest> - </archive> - </configuration> - </plugin> - - <plugin> - <artifactId>maven-surefire-plugin</artifactId> - <configuration> - <systemPropertyVariables> - <java.io.tmpdir>${project.build.directory}/surefire-workdir</java.io.tmpdir> - </systemPropertyVariables> - </configuration> - <executions> - <execution> - <id>surefire-it</id> - <phase>integration-test</phase> - <goals> - <goal>test</goal> - </goals> - <configuration> - <includes> - <include>**/*IT.java</include> - </includes> - </configuration> - </execution> - </executions> - </plugin> - - <plugin> - <artifactId>maven-site-plugin</artifactId> - <dependencies> - <dependency> - <groupId>org.nuiton.jrst</groupId> - <artifactId>doxia-module-jrst</artifactId> - <version>${jrstPluginVersion}</version> - </dependency> - </dependencies> - </plugin> - </plugins> - </pluginManagement> - <plugins> <plugin> <groupId>org.apache.maven.plugins</groupId> @@ -710,6 +641,7 @@ <plugin> <groupId>org.nuiton.eugene</groupId> <artifactId>eugene-maven-plugin</artifactId> + <version>2.14</version> <executions> <execution> <id>eugene-generation</id> @@ -739,6 +671,7 @@ <plugin> <groupId>org.nuiton.jaxx</groupId> <artifactId>jaxx-maven-plugin</artifactId> + <version>${jaxxVersion}</version> <executions> <execution> <goals> @@ -756,6 +689,7 @@ <plugin> <groupId>org.nuiton.i18n</groupId> <artifactId>i18n-maven-plugin</artifactId> + <version>${nuitonI18nVersion}</version> <configuration> <entries> <entry> @@ -813,13 +747,90 @@ </execution> </executions> </plugin> + <plugin> + <artifactId>maven-jar-plugin</artifactId> + <configuration> + <archive> + <manifest> + <addClasspath>true</addClasspath> + <mainClass>fr.ifremer.isisfish.IsisFish</mainClass> + <classpathPrefix>lib/</classpathPrefix> + </manifest> + </archive> + </configuration> + </plugin> + + <plugin> + <groupId>com.github.eirslett</groupId> + <artifactId>frontend-maven-plugin</artifactId> + <version>1.3</version> + <configuration> + <nodeVersion>v7.7.4</nodeVersion> + </configuration> + <executions> + <execution> + <id>install node and npm</id> + <goals> + <goal>install-node-and-npm</goal> + </goals> + </execution> + <execution> + <id>npm install</id> + <goals> + <goal>npm</goal> + </goals> + <configuration> + <arguments>install</arguments> + </configuration> + </execution> + <execution> + <id>npm run</id> + <goals> + <goal>npm</goal> + </goals> + <configuration> + <arguments>run build</arguments> + </configuration> + </execution> + </executions> + </plugin> + + <plugin> <artifactId>maven-surefire-plugin</artifactId> <version>2.19.1</version> <configuration> <argLine>${argLine}</argLine> + <systemPropertyVariables> + <java.io.tmpdir>${project.build.directory}/surefire-workdir</java.io.tmpdir> + </systemPropertyVariables> </configuration> + <executions> + <execution> + <id>surefire-it</id> + <phase>integration-test</phase> + <goals> + <goal>test</goal> + </goals> + <configuration> + <includes> + <include>**/*IT.java</include> + </includes> + </configuration> + </execution> + </executions> </plugin> + + <plugin> + <artifactId>maven-site-plugin</artifactId> + <dependencies> + <dependency> + <groupId>org.nuiton.jrst</groupId> + <artifactId>doxia-module-jrst</artifactId> + <version>${jrstPluginVersion}</version> + </dependency> + </dependencies> + </plugin> </plugins> </build> Modified: trunk/src/main/java/fr/ifremer/isisfish/entities/RegionExportJson.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/entities/RegionExportJson.java 2017-03-17 16:43:07 UTC (rev 4412) +++ trunk/src/main/java/fr/ifremer/isisfish/entities/RegionExportJson.java 2017-03-27 09:35:09 UTC (rev 4413) @@ -24,7 +24,6 @@ import com.fasterxml.jackson.core.JsonFactory; import com.fasterxml.jackson.core.JsonGenerator; -import com.fasterxml.jackson.databind.ObjectMapper; import fr.ifremer.isisfish.IsisConfig; import fr.ifremer.isisfish.types.Month; import fr.ifremer.isisfish.types.RangeOfValues; @@ -97,7 +96,7 @@ public RegionExportJson(Writer w) { try { JsonFactory f = new JsonFactory(); - g = f.createGenerator(w); + g = f.createGenerator(w)/*.useDefaultPrettyPrinter()*/; toVisit = new LinkedList<>(); visited = new HashSet<>(); @@ -231,7 +230,6 @@ public void start() { try { g.writeStartObject(); - ObjectMapper m = new ObjectMapper(); } catch (IOException eee) { throw new RuntimeException(eee); } Modified: trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2017-03-17 16:43:07 UTC (rev 4412) +++ trunk/src/main/java/fr/ifremer/isisfish/simulator/launcher/SSHSimulatorLauncher.java 2017-03-27 09:35:09 UTC (rev 4413) @@ -142,7 +142,7 @@ */ protected void initFreemarker() { - freemarkerConfiguration = new Configuration(Configuration.VERSION_2_3_0); + freemarkerConfiguration = new Configuration(Configuration.VERSION_2_3_25); // needed to overwrite "Defaults to default system encoding." // fix encoding issue on some systems Modified: trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputHandler.java =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputHandler.java 2017-03-17 16:43:07 UTC (rev 4412) +++ trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputHandler.java 2017-03-27 09:35:09 UTC (rev 4413) @@ -33,6 +33,7 @@ import java.awt.Cursor; import java.awt.event.ItemEvent; import java.io.File; +import java.io.FileWriter; import java.io.IOException; import javax.swing.JOptionPane; @@ -44,9 +45,16 @@ import javax.swing.tree.TreeModel; import javax.swing.tree.TreePath; +import fr.ifremer.isisfish.IsisFish; import fr.ifremer.isisfish.entities.FisheryRegionImpl; import fr.ifremer.isisfish.logging.RegionChangeLogger; +import fr.ifremer.isisfish.simulator.launcher.SSHSimulatorLauncher; import fr.ifremer.isisfish.ui.input.spatial.AskNewSpatialUI; +import freemarker.cache.ClassTemplateLoader; +import freemarker.ext.beans.BeansWrapper; +import freemarker.template.Configuration; +import freemarker.template.Template; +import freemarker.template.TemplateException; import org.apache.commons.lang3.StringUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; @@ -54,6 +62,7 @@ import org.nuiton.topia.TopiaContext; import org.nuiton.topia.TopiaException; import org.nuiton.topia.persistence.TopiaEntityContextable; +import org.nuiton.util.DesktopUtil; import org.nuiton.util.FileUtil; import fr.ifremer.isisfish.IsisFishDAOHelper; @@ -87,7 +96,12 @@ import java.io.InputStreamReader; import java.io.OutputStream; import java.io.OutputStreamWriter; +import java.io.StringWriter; +import java.io.Writer; +import java.nio.charset.StandardCharsets; import java.util.Collection; +import java.util.HashMap; +import java.util.Map; import java.util.zip.GZIPInputStream; import java.util.zip.GZIPOutputStream; import org.nuiton.topia.persistence.TopiaEntity; @@ -391,7 +405,7 @@ /** * Exporter une entite json gzip */ - protected void exportJson(TopiaEntity e) { + protected void exportJson(TopiaEntity e) { try { File file = FileUtil.getFile(t("isisfish.input.menu.exportJson"), t("isisfish.common.export"), (Component)null, ".*" + RegionExportJson.FORMAT_EXTENSION + "$", t("isisfish.message.import.json.zipped")); @@ -755,4 +769,43 @@ askNewSpatialUI.setVisible(true); } } + + /** + * Realise un export JSON et affiche la page de visualisation dans un navigateur. + */ + public void exportWeb() { + try { + StringWriter outJson = new StringWriter(); + RegionExportJson json = new RegionExportJson(outJson); + + FisheryRegion fisheryRegion = inputUI.getContextValue(FisheryRegion.class); + json.export(fisheryRegion); + + Configuration freemarkerConfiguration = new Configuration(Configuration.VERSION_2_3_25); + freemarkerConfiguration.setDefaultEncoding("utf-8"); + ClassTemplateLoader templateLoader = new ClassTemplateLoader(InputHandler.class, "/"); + freemarkerConfiguration.setTemplateLoader(templateLoader); + freemarkerConfiguration.setObjectWrapper(new BeansWrapper(Configuration.VERSION_2_3_25)); + + // get template + Template template = freemarkerConfiguration.getTemplate("templates/web/region-web.html"); + Map<String, Object> root = new HashMap<>(); + root.put("fisheryRegion", fisheryRegion); + root.put("jsonExport", "\nvar jsonExport = " + outJson.toString() + ";"); + + // render template + File outFile = File.createTempFile("isis-export-", ".html"); + outFile.deleteOnExit(); + Writer outWriter = new OutputStreamWriter(new BufferedOutputStream(new FileOutputStream(outFile)), StandardCharsets.UTF_8); + template.process(root, outWriter); + outWriter.flush(); + + // open file + DesktopUtil.browse(outFile.toURI()); + + } catch (IOException|TemplateException ex) { + throw new IsisFishRuntimeException("Can't export web", ex); + } + + } } Modified: trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputUI.jaxx =================================================================== --- trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputUI.jaxx 2017-03-17 16:43:07 UTC (rev 4412) +++ trunk/src/main/java/fr/ifremer/isisfish/ui/input/InputUI.jaxx 2017-03-27 09:35:09 UTC (rev 4413) @@ -42,9 +42,11 @@ <JMenuItem id="menuRegionExport" text="isisfish.input.menu.exportRegion" enabled='{isRegionLoaded()}' onActionPerformed="handler.exportRegion()" /> <JMenuItem id="menuExportJson" text="isisfish.input.menu.exportJson" enabled='{isRegionLoaded()}' onActionPerformed="handler.exportEntityJson()" /> <JMenuItem id="menuImportJson" text="isisfish.input.menu.importJson" enabled='{isRegionLoaded()}' onActionPerformed="handler.importEntityJson()" /> - <JMenuItem id="menuChangeResolution" text="isisfish.input.menu.changeResolution" enabled='{isRegionLoaded()}' onActionPerformed="handler.changeSpatialResolution()" /> <JMenuItem id="menuRegionCopy" text="isisfish.input.menu.copyRegion" enabled='{isRegionLoaded()}' onActionPerformed="handler.copyRegion()" /> <JSeparator/> + <JMenuItem id="menuChangeResolution" text="isisfish.input.menu.changeResolution" enabled='{isRegionLoaded()}' onActionPerformed="handler.changeSpatialResolution()" /> + <JMenuItem id="menuExportWeb" text="isisfish.input.menu.exportWeb" enabled='{isRegionLoaded()}' onActionPerformed="handler.exportWeb()" /> + <JSeparator/> <JMenuItem text="isisfish.input.menu.removeLocaly" enabled='{isRegionLoaded()}' onActionPerformed="handler.removeRegion(false)" /> </JMenu> <JMenu text="isisfish.input.menu.server"> Added: trunk/src/main/javascript/templates/web/region-web.html =================================================================== --- trunk/src/main/javascript/templates/web/region-web.html (rev 0) +++ trunk/src/main/javascript/templates/web/region-web.html 2017-03-27 09:35:09 UTC (rev 4413) @@ -0,0 +1,601 @@ +<!doctype html> +<html> + <head> + <title>Region ${fisheryRegion.name}</title> + <meta charset="UTF-8"> + + <style type="text/css"> + .exportTitle { + text-align: center; + } + .category { + + } + .category > .title { + color: #044F90; + border-bottom: 1px solid; + } + .category .entity { + margin-left: 15px; + } + .category .entity > .detailblock { + margin-left: 15px; + } + .category .entity > .title { + text-decoration: underline; + cursor: pointer; + } + .warning { + color: #FFA500; + } + .error { + color: red; + } + </style> + + <script> + function render(json) { + let content = renderJsonExport(json); + document.getElementById("render").innerHTML = content; + } + + function renderJsonExport(json) { + return `<div class='category' id="regions"> + <div class='title'>Region</div> + ${renderCollection(json, json.FisheryRegion, renderFisheryRegion)} + </div> + <div class='category' id="cells"> + <div class='title'>Mailles</div> + ${renderCollection(json, json.Cell, renderCell)} + </div> + <div class='category' id="zones"> + <div class='title'>Zones</div> + ${renderCollection(json, json.Zone, renderZone)} + </div> + <div class='category' id="ports"> + <div class='title'>Ports</div> + ${renderCollection(json, json.Port, renderPort)} + </div> + <div class='category' id="species"> + <div class='title'>Species</div> + ${renderCollection(json, json.Species, renderSpecies)} + </div> + <div class='category' id='populations'> + <div class='title'>Population</div> + ${renderCollection(json, json.Population, renderPopulation)} + </div> + <div class='category' id='gears'> + <div class='title'>Gears</div> + ${renderCollection(json, json.Gear, renderGear)} + </div> + <div class='category' id='metiers'> + <div class='title'>Metiers</div> + ${renderCollection(json, json.Metier, renderMetier)} + </div> + <div class='category' id='triptypes'> + <div class='title'>Trip types</div> + ${renderCollection(json, json.TripType, renderTripType)} + </div> + <div class='category' id='vesselTypes'> + <div class='title'>Vessel types</div> + ${renderCollection(json, json.VesselType, renderVesselType)} + </div> + <div class='category' id='setofvessels'> + <div class='title'>Set of vessels</div> + ${renderCollection(json, json.SetOfVessels, renderSetOfVessels)} + </div> + <div class='category' id='strategies'> + <div class='title'>Strategies</div> + ${renderCollection(json, json.Strategy, renderStrategy)} + </div> + <div class='category' id='observations'> + <div class='title'>Observation</div> + ${renderCollection(json, json.Observation, renderObservation)} + </div> + `; + } + + function renderFisheryRegion(json, fisheryRegion) { + return ` + <div class='entity' id='${cleanEntityId(fisheryRegion)}'> + <span class='title' onclick='switchDetail(this)'>${fisheryRegion.name}</span> + <div class='detailblock'> + <div class='detail'>Latitude minimale : ${fisheryRegion.minLatitude}</div> + <div class='detail'>Latitude maximale : ${fisheryRegion.maxLatitude}</div> + <div class='detail'>Longitude minimale : ${fisheryRegion.minLongitude}</div> + <div class='detail'>Longitude maximale : ${fisheryRegion.maxLongitude}</div> + <div class='detail'>Longitude maximale : ${fisheryRegion.maxLongitude}</div> + <div class='detail'>Latitude : ${fisheryRegion.cellLengthLatitude}</div> + <div class='detail'>Longitude : ${fisheryRegion.cellLengthLongitude}</div> + <div class='detail'>Commentaire : ${fisheryRegion.comment}</div> + </div> + </div>`; + } + + function renderCell(json, cell) { + return ` + <div class='entity' id='${cleanEntityId(cell)}'> + <span class='title' onclick='switchDetail(this)'>${cell.name}</span> + <div class='detailblock'> + <div class='detail'>Latitude : ${cell.latitude}</div> + <div class='detail'>Longitude : ${cell.longitude}</div> + <div class='detail'>Terre : ${cell.land}</div> + <div class='detail'>Comment : ${cell.comment}</div> + </div> + </div>`; + } + + function renderZone(json, zone) { + return ` + <div class='entity' id='${cleanEntityId(zone)}'> + <span class='title' onclick='switchDetail(this)'>${zone.name}</span> + <div class='detailblock'> + <div class='detail'>Cell : ${entityIdsLinks(json, zone.cell)}</div> + <div class='detail'>Comment : ${zone.comment}</div> + </div> + </div>`; + } + + function renderPort(json, port) { + return ` + <div class='entity' id='${cleanEntityId(port)}'> + <span class='title' onclick='switchDetail(this)'>${port.name}</span> + <div class='detailblock'> + <div class='detail'>Cell : ${entityIdLink(json, port.cell)}</div> + <div class='detail'>Comment : ${port.comment}</div> + </div> + </div>`; + } + + function renderSpecies(json, species) { + return ` + <div class='entity' id='${cleanEntityId(species)}'> + <span class='title' onclick='switchDetail(this)'>${species.name}</span> + <div class='detailblock'> + <div class='detail'>Scientific name : ${species.scientificName}</div> + <div class='detail'>Code rubbin : ${species.codeRubbin}</div> + <div class='detail'>Code CEE : ${species.codeCEE}</div> + <div class='detail'>Age group type : ${species.ageGroupType}</div> + <div class='detail'>Populations : ${entityIdsLinks(json, species.population)}</div> + <div class='detail'>Comment : ${species.comment}</div> + </div> + </div>`; + } + + function renderPopulation(json, population) { + return ` + <div class='entity' id='${cleanEntityId(population)}'> + <span class='title' onclick='switchDetail(this)'>${population.name}</span> + <div class='detailblock'> + <div class='detail'>Geographic Id : ${population.geographicId}</div> + <div class='detail'>plusGroup : ${population.plusGroup}</div> + ${renderEquation(json, "growth", population.growth)} + ${renderEquation(json, "growthReverse", population.growthReverse)} + <div class='detail'>Comment : ${population.comment}</div> + + <div class='detail'>Population zones : ${entityIdsLinks(json, population.populationZone)}</div> + <div class='detail'>Reproduction zones : ${entityIdsLinks(json, population.reproductionZone)}</div> + <div class='detail'>Recruitment zones : ${entityIdsLinks(json, population.reproductionZone)}</div> + ${renderMatrix(json, "Mapping of reproduction zones and recruitment zones", population.mappingZoneReproZoneRecru)} + + ${renderCollection(json, population.populationSeasonInfo, renderPopulationSeasonInfo)} + + ${renderEquation(json, "naturalDeathRate", population.naturalDeathRate)} + ${renderEquation(json, "meanWeight", population.meanWeight)} + ${renderEquation(json, "maturityOgive", population.maturityOgiveEquation)} + ${renderEquation(json, "reproductionRateEquation", population.reproductionRateEquation)} + + ${renderEquation(json, "reproduction", population.reproductionEquation)} + <div class='detail'>Month gap between repro and recruitment : ${population.monthGapBetweenReproRecrutement}</div> + ${renderMatrix1D(json, "Recruitment distribution", population.recruitmentDistribution)} + ${renderEquation(json, "Recruitment equation", population.recruitmentEquation)} + <div class='detail'>Recruitment comment : ${population.recruitmentComment}</div> + + ${renderCollection(json, population.populationGroup, renderPopulationGroup)} + + ${renderMatrix(json, "Accessibility", population.capturability)} + ${renderEquation(json, "Accessibility equation", population.capturabilityEquation)} + <div class='detail'>Accessibility comment : ${population.capturabilityComment}</div> + + ${renderCollection(json, population.populationSeasonInfo, renderPopulationSeasonInfoMigration)} + <div class='detail'>Migration comment : ${population.migrationComment}</div> + + ${renderEquation(json, "Price", population.price)} + + <div class='detail'>Fbar Group Min : ${population.fbarGroupMin}</div> + <div class='detail'>Fbar Group Max : ${population.fbarGroupMax}</div> + <div class='detail'>Abundance reference month : ${population.abundanceReferenceMonth}</div> + <div class='detail'>F computing : ${population.computeFOnLandings}</div> + ${renderEquation(json, "Fishing mortality other fleets", population.fishingMortalityOtherFleets)} + </div> + </div>`; + } + + function renderPopulationSeasonInfo(json, psi) { + return ` + <div class='entity' id='${cleanEntityId(psi)}'> + <span class='title' onclick='switchDetail(this)'>${psi.firstMonth} - ${psi.lastMonth}</span> + <div class='detailblock'> + <div class='detail'>Group change : ${psi.groupChange}</div> + <div class='detail'>Reproduction : ${psi.reproduction}</div> + ${renderMatrix(json, "Reproduction distribution", psi.reproductionDistribution)} + <div class='detail'>Comment : ${psi.comment}</div> + </div> + </div>`; + } + + function renderPopulationSeasonInfoMigration(json, psi) { + return ` + <div class='entity' id='${cleanEntityId(psi)}'> + <span class='title' onclick='switchDetail(this)'>${psi.firstMonth} - ${psi.lastMonth}</span> + <div class='detailblock'> + <div class='detail'>Use migration equation : ${psi.useEquationMigration}</div> + ${renderEquation(json, "reproductionRateEquation", psi.migrationEquation)} + ${renderEquation(json, "reproductionRateEquation", psi.immigrationEquation)} + ${renderEquation(json, "reproductionRateEquation", psi.emigrationEquation)} + ${renderMatrix(json, "Migration matrix", psi.migrationMatrix)} + ${renderMatrix(json, "Immigration matrix", psi.immigrationMatrix)} + ${renderMatrix(json, "Emmigration matrix", psi.emigrationMatrix)} + </div> + </div>`; + } + + function renderPopulationGroup(json, pg) { + return ` + <div class='entity' id='${cleanEntityId(pg)}'> + <span class='title' onclick='switchDetail(this)'>${pg["#toString"]}</span> + <div class='detailblock'> + <div class='detail'>Age : ${pg.age}</div> + <div class='detail'>Min length : ${pg.minLength}</div> + <div class='detail'>Max length : ${pg.maxLength}</div> + <div class='detail'>Comment : ${pg.comment}</div> + </div> + </div>`; + } + + function renderGear(json, gear) { + return ` + <div class='entity' id='${cleanEntityId(gear)}'> + <span class='title' onclick='switchDetail(this)'>${gear.name}</span> + <div class='detailblock'> + <div class='detail'>Effort unit : ${gear.effortUnit}</div> + <div class='detail'>Standardisation factor : ${gear.standardisationFactor}</div> + <div class='detail'>Technical parameter : ${gear.parameterName}</div> + <div class='detail'>Range of values : ${gear.possibleValue}</div> + <div class='detail'>Comment : ${gear.comment}</div> + ${renderCollection(json, gear.populationSelectivity, renderSelectivity)} + </div> + </div>`; + } + + function renderSelectivity(json, selectivity) { + return ` + <div class='entity' id='${cleanEntityId(selectivity)}'> + <span class='title' onclick='switchDetail(this)'>${selectivity['#toString']}</span> + <div class='detailblock'> + <div class='detail'>Population : ${entityIdLink(json, selectivity.population)}</div> + ${renderEquation(json, "Equation", selectivity.equation)} + </div> + </div>`; + } + + function renderMetier(json, metier) { + return ` + <div class='entity' id='${cleanEntityId(metier)}'> + <span class='title' onclick='switchDetail(this)'>${metier.name}</span> + <div class='detailblock'> + <div class='detail'>Gear : ${entityIdLink(json, metier.gear)}</div> + <div class='detail'>Range of values : ${metier.gearParameterValue}</div> + <div class='detail'>Comment : ${metier.comment}</div> + ${renderCollection(json, metier.metierSeasonInfo, renderMetierSeasonInfo)} + </div> + </div>`; + } + + function renderMetierSeasonInfo(json, msi) { + return ` + <div class='entity' id='${cleanEntityId(msi)}'> + <span class='title' onclick='switchDetail(this)'>${msi['#toString']}</span> + <div class='detailblock'> + <div class='detail'>Zones : ${entityIdsLinks(json, msi.zone)}</div> + <div class='detail'>Comment : ${msi.comment}</div> + ${renderCollection(json, msi.speciesTargetSpecies, renderTargetSpecies)} + </div> + </div>`; + } + + function renderTargetSpecies(json, ts) { + return ` + <div class='entity' id='${cleanEntityId(ts)}'> + <span class='title' onclick='switchDetail(this)'>${ts['#toString']}</span> + <div class='detailblock'> + <div class='detail'>Species : ${entityIdLink(json, ts.species)}</div> + ${renderEquation(json, "Target factor", ts.targetFactorEquation)} + <div class='detail'>Main species for the metier : ${ts.primaryCatch}</div> + </div> + </div>`; + } + + function renderTripType(json, tripType) { + return ` + <div class='entity' id='${cleanEntityId(tripType)}'> + <span class='title' onclick='switchDetail(this)'>${tripType.name}</span> + <div class='detailblock'> + <div class='detail'>Duration : ${tripType.tripDuration}</div> + <div class='detail'>Minimum time between trips : ${tripType.minTimeBetweenTrip}</div> + <div class='detail'>Comment : ${tripType.comment}</div> + </div> + </div>`; + } + + function renderVesselType(json, vesselType) { + return ` + <div class='entity' id='${cleanEntityId(vesselType)}'> + <span class='title' onclick='switchDetail(this)'>${vesselType.name}</span> + <div class='detailblock'> + <div class='detail'>Length : ${vesselType.length}</div> + <div class='detail'>Speed : ${vesselType.speed}</div> + <div class='detail'>Max trip duration : ${vesselType.maxTripDuration}</div> + <div class='detail'>Activity range : ${vesselType.activityRange}</div> + <div class='detail'>Minimum Crew Size : ${vesselType.minCrewSize}</div> + <div class='detail'>Travel fuel cost : ${vesselType.unitFuelCostOfTravel}</div> + <div class='detail'>Trip type : ${entityIdsLinks(json, vesselType.tripType)}</div> + <div class='detail'>Comment : ${vesselType.comment}</div> + </div> + </div>`; + } + + function renderSetOfVessels(json, setOfVessels) { + return ` + <div class='entity' id='${cleanEntityId(setOfVessels)}'> + <span class='title' onclick='switchDetail(this)'>${setOfVessels.name}</span> + <div class='detailblock'> + <div class='detail'>Port : ${entityIdLink(json, setOfVessels.port)}</div> + <div class='detail'>Vessel type : ${entityIdLink(json, setOfVessels.vesselType)}</div> + <div class='detail'>numberOfVessels : ${setOfVessels.numberOfVessels}</div> + <div class='detail'>fixedCosts : ${setOfVessels.fixedCosts}</div> + ${renderEquation(json, "Technical efficiency", setOfVessels.technicalEfficiencyEquation)} + <div class='detail'>Comment : ${setOfVessels.comment}</div> + ${renderCollection(json, setOfVessels.possibleMetiers, renderEffortDescription)} + </div> + </div>`; + } + + function renderEffortDescription(json, ed) { + return ` + <div class='entity' id='${cleanEntityId(ed)}'> + <span class='title' onclick='switchDetail(this)'>${ed['#toString']}</span> + <div class='detailblock'> + <div class='detail'>Possible metier : ${entityIdLink(json, ed.possibleMetiers)}</div> + <div class='detail'>Fishing operation : ${ed.fishingOperation}</div> + <div class='detail'>fishingOperationDuration : ${ed.fishingOperationDuration}</div> + <div class='detail'>gearsNumberPerOperation : ${ed.gearsNumberPerOperation}</div> + <div class='detail'>crewSize : ${ed.crewSize}</div> + <div class='detail'>unitCostOfFishing : ${ed.unitCostOfFishing}</div> + <div class='detail'>fixedCrewSalary : ${ed.fixedCrewSalary}</div> + <div class='detail'>crewShareRate : ${ed.crewShareRate}</div> + <div class='detail'>repairAndMaintenanceGearCost : ${ed.repairAndMaintenanceGearCost}</div> + <div class='detail'>landingCosts : ${ed.landingCosts}</div> + <div class='detail'>otherRunningCost : ${ed.otherRunningCost}</div> + </div> + </div>`; + } + + function renderStrategy(json, strategy) { + return ` + <div class='entity' id='${cleanEntityId(strategy)}'> + <span class='title' onclick='switchDetail(this)'>${strategy.name}</span> + <div class='detailblock'> + <div class='detail'>Set of vessels : ${entityIdLink(json, strategy.setOfVessels)}</div> + <div class='detail'>Set of vessels proportion : ${strategy.proportionSetOfVessels}</div> + <div class='detail'>Use inactivity equation : ${strategy.inactivityEquationUsed}</div> + ${renderEquation(json, "Inactivity equation", strategy.inactivityEquation)} + <div class='detail'>Comment : ${strategy.comment}</div> + ${renderCollection(json, strategy.strategyMonthInfo, renderStrategyMonthInfo)} + </div> + </div>`; + } + + function renderStrategyMonthInfo(json, smi) { + return ` + <div class='entity' id='${cleanEntityId(smi)}'> + <span class='title' onclick='switchDetail(this)'>${smi['#toString']}</span> + <div class='detailblock'> + <div class='detail'>Trip type : ${entityIdLink(json, smi.tripType)}</div> + <div class='detail'>numberOfTrips : ${smi.numberOfTrips}</div> + <div class='detail'>minInactivityDays : ${smi.minInactivityDays}</div> + ${renderMatrix1D(json, "Proportion metier", smi.proportionMetier)} + </div> + </div>`; + } + + function renderObservation(json, observation) { + return ` + <div class='entity' id='${cleanEntityId(observation)}'> + <span class='title' onclick='switchDetail(this)'>${observation.name}</span> + <div class='detailblock'> + ${renderMatrix(json, "Value", observation.value)} + </div> + </div>`; + } + + // apply "f" function for each entity of each id of collection + function renderCollection(json, ids, f) { + return ids.map(id => f(json, json["#entities"][id])).join("\n") + } + + // clean entity id to be used in anchor + function cleanEntityId(entity) { + return entity["#id"].replace(/#/g,'_'); + } + + // generate entity link on id with name as content + function entityLink(entity) { + return `<a href='#${cleanEntityId(entity)}'>${entity.name || entity["#toString"]}</a>`; + } + + // generate link on entity represented by his id + function entityIdLink(json, entityId) { + let entity = json["#entities"][entityId]; + let result = ""; + if (entity) { //entity found + result = entityLink(entity); + } else if (!entityId || entityId == "null") { // entity id empty + result = ""; + } else if (entityId.indexOf("fr.") == 0) { // topia id, but not found + result = `<span class='error' title='${entityId}'>Todo</span>`; + } else { // other case "Month 0" ... + result = `<span class='warning'>${entityId}</span>`; + } + return result; + } + + // generate link on entity for each id of collection + function entityIdsLinks(json, entityIds) { + return entityIds.map(id => entityIdLink(json, id)).join(", "); + } + + // render equation + function renderEquation(json, name, id) { + let equation = json["#entities"][id]; + let result = ""; + if (equation) { + result = `<div class='detail'>${name} : <pre class='highlight java'>${equation.content}</pre></div>`; + } + return result; + } + + // render matrix 1D + function renderMatrix1D(json, name, content) { + if (!content) { + return ""; + } + + // convert semantics + let contentLines = content.split('\n'); + let semantique0 = contentLines[1].substring(contentLines[1].indexOf(":") + 1).split(";").map(s => s.substring(0, s.indexOf(":"))); + + // create matrix filled with 0 + let matrix = new Array(semantique0.length); + for (var i = 0; i < semantique0.length; i++) { + matrix[i] = 0; + } + // add values in matrix with coordinate + for (let index = 3; index < contentLines.length; index++) { + if (contentLines[index]) { + let values = contentLines[index].split(";"); + matrix[values[0]] = values[1]; + } + } + + // render matrix + let html = `${name} : <table border='1'>` + + "<tr>"; + semantique0.forEach(sem => html += "<th>" + entityIdLink(json, sem) + "</th>"); + html += "</tr>"; + html += "<tr>"; + for (let i = 0; i < matrix.length; i++) { + html += "<td>" + matrix[i] + "</td>"; + } + html += "</tr>"; + html += "</table>"; + return html; + } + + // render matrix 2D + function renderMatrix(json, name, content) { + if (!content) { + return ""; + } + + // convert semantics + let contentLines = content.split('\n'); + let semantique0 = contentLines[1].substring(contentLines[1].indexOf(":") + 1).split(";").map(s => s.substring(0, s.indexOf(":"))); + let semantique1 = contentLines[2].substring(contentLines[2].indexOf(":") + 1).split(";").map(s => s.substring(0, s.indexOf(":"))); + + // create matrix filled with 0 + let matrix = new Array(semantique0.length); + for (var i = 0; i < semantique0.length; i++) { + matrix[i] = new Array(semantique1.length); + for (var j = 0; j < semantique1.length; j++) { + matrix[i][j] = 0; + } + } + // add values in matrix with coordinate + for (let index = 4; index < contentLines.length; index++) { + if (contentLines[index]) { + let values = contentLines[index].split(";"); + matrix[values[0]][values[1]] = values[2]; + } + } + + // render matrix + let html = `${name} : <table border='1'>` + + "<tr><th />"; + semantique1.forEach(sem => html += "<th>" + entityIdLink(json, sem) + "</th>"); + html += "</tr>"; + for (let i = 0; i < matrix.length; i++) { + html += "<tr><th>" + entityIdLink(json, semantique0[i]) + "</th>"; + for (let j = 0; j < matrix[i].length; j++) { + html += "<td>" + matrix[i][j] + "</td>"; + } + html += "</tr>"; + } + html += "</table>"; + return html; + } + + // display or hide details + function switchDetail(element) { + let detailBlock = element.parentNode.getElementsByClassName("detailblock")[0]; + if (detailBlock.style.display == "none") { + detailBlock.style.display = "block" + } else { + detailBlock.style.display = "none" + } + } + + // ${jsonExport} + </script> + </head> + + <body> + <h1 class="exportTitle">Region XXX</h1> + + Menu: + <div id="toc"> + <ul> + <li><a href="#regions">Region</a></li> + <li><a href="#cells">Mailles</a></li> + <li><a href="#ports">Ports</a></li> + <li><a href="#species">Species</a></li> + <li><a href="#populations">Populations</a></li> + <li><a href="#gears">Gears</a></li> + <li><a href="#metiers">Metier</a></li> + <li><a href="#triptypes">Trip types</a></li> + <li><a href="#vesseltypes">Vessel types</a></li> + <li><a href="#setofvessels">Set of vessels</a></li> + <li><a href="#strategies">Strategies</a></li> + <li><a href="#observations">Observations</a></li> + </ul> + <div> + <div id="render"> + + </div> + + <script> + render(jsonExport) + </script> + + <link rel="stylesheet" href="http://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.10.0/styles/default.mi…" /> + <script src="http://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.10.0/highlight.min.js"></script> + <script> + if (window.hljs) { + for (let block of document.getElementsByClassName("highlight")) { + hljs.highlightBlock(block) + } + } + </script> + + </body> +</html> \ No newline at end of file Modified: trunk/src/main/resources/i18n/isis-fish_en_GB.properties =================================================================== --- trunk/src/main/resources/i18n/isis-fish_en_GB.properties 2017-03-17 16:43:07 UTC (rev 4412) +++ trunk/src/main/resources/i18n/isis-fish_en_GB.properties 2017-03-27 09:35:09 UTC (rev 4413) @@ -491,6 +491,7 @@ isisfish.input.menu.copyRegion=Copy region isisfish.input.menu.exportJson=Export current object in JSON isisfish.input.menu.exportRegion=Export region +isisfish.input.menu.exportWeb=Export web isisfish.input.menu.importJson=Import objets from JSON isisfish.input.menu.importRegion=Import region isisfish.input.menu.importRegionSimulation=Import region from simulation Modified: trunk/src/main/resources/i18n/isis-fish_fr_FR.properties =================================================================== --- trunk/src/main/resources/i18n/isis-fish_fr_FR.properties 2017-03-17 16:43:07 UTC (rev 4412) +++ trunk/src/main/resources/i18n/isis-fish_fr_FR.properties 2017-03-27 09:35:09 UTC (rev 4413) @@ -491,6 +491,7 @@ isisfish.input.menu.copyRegion=Copier région isisfish.input.menu.exportJson=Exporter l'objet courant en JSON isisfish.input.menu.exportRegion=Exporter la région +isisfish.input.menu.exportWeb=Export web isisfish.input.menu.importJson=Importer des objets JSON isisfish.input.menu.importRegion=Importer une région isisfish.input.menu.importRegionSimulation=Importer la région d'une simulation

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[ANN] - ISIS-Fish 4.4.1.0-rc-1 released
by codelutin.com Release Notification March 17, 2017

March 17, 2017

The ISIS-Fish team is pleased to announce the isis-fish-4.4.1.0-rc-1 release! Simulateur de pecherie complexe. Documentation of the project can be found here: http://doc.codelutin.com/isis-fish Changes ------- Changes in this version include: New features: o Pouvoir copier/coller une partie de base dans une autre base Issue: 429. Thanks to Jean Couteau. Resolved by bpoussin. o Lorsqu'on utilise ses propres fichiers cartes, ne pas utiliser de couleur de fond Issue: 8833. Thanks to Benjamin Poussin. Resolved by bpoussin. o Export / Import des éléments d'une région, soit pour import dans une autre région, soit pour fusion de deux régions. Issue: 8737. Thanks to Benjamin Poussin. Resolved by bpoussin. o Améliorer l'affichage du temps de progression des simulations Issue: 8484. Thanks to Benjamin Poussin. Resolved by bpoussin. o Log de toutes les modifications de la base Issue: 8451. Thanks to Eric Chatellier. Resolved by echatellier. o Amélioration du fond de carte Issue: 419. Thanks to Jean Couteau. Resolved by bpoussin. o Supprimer l'option -Xmx des scripts de lancement Issue: 8834. Thanks to Benjamin Poussin. Resolved by echatellier. o Pouvoir utilisé des objets natifs java pour les semantiques dans IsisMatrixSemanticMapper Issue: 8972. Thanks to Benjamin Poussin. Resolved by bpoussin. o Pouvoir charger des matrice d'observation avec sémantique Issue: 8971. Thanks to Benjamin Poussin. Resolved by bpoussin. o Modification de la finesse de la résolution spatiale Issue: 8734. Thanks to Benjamin Poussin. Resolved by echatellier. Fixed Bugs: o getRecruitment Issue: 8968. Thanks to Sigrid Lehuta. Resolved by bpoussin. o Impossible d'utiliser R via le package rJava en x64 Issue: 8787. Thanks to Eric Chatellier. Resolved by echatellier. o Les resultats nécéssaires aux exports sont mal pris en compte par le cache Issue: 8802. Thanks to Eric Chatellier. Resolved by echatellier. o Lors du changement des shp file, la carte ne se met pas a jour Issue: 8827. Thanks to Benjamin Poussin. Resolved by echatellier. o Les shapes chargés dans l'onglet de définition de la pêcherie, n'apparaissents pas dans l'onglet zones Issue: 9085. Thanks to Sigrid Lehuta. Resolved by echatellier. Changes: o Update to h2 1.4.194 Issue: 7988. Thanks to Eric Chatellier. Resolved by echatellier. Downloads --------- For a manual installation, you can download files here: https://forge.codelutin.com/projects/isis-fish/files * isis-fish-4.4.1.0-rc-1-bin.zip - https://forge.codelutin.com/attachments/download/4558 Maven artifacts --------------- Artifacts are deployed in nuiton maven repository http://maven.nuiton.org/other-releases/ Have fun! -ISIS-Fish team

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