March 2020 - Isis-fish-users - mailman.cloud.codelutin.com

simu lente + info bizarre V4.4.2.5
by Sigrid LEHUTA March 4, 2020

March 4, 2020

Bonjour, mes simulations mettent beaucoup de temps à démarrer et les informations de durée de chaque etape sont fausses (cf dessous). Voyez vous d ou vient le probleme ? quelles infos vous sont necessaires ? Simulation Information: Duration: 0ns Start: 1970.01.01 01:00:00 End: 1970.01.01 01:00:00 -- NB : Please note that I do not work on Monday mornings and Wednesday afternoons Sigrid LEHUTA ~ ><> ~ Ecologie et Modèles pour l'Halieutique IFREMER Nantes Rue de l'Ile d'Yeu - BP 21105, 44311 Nantes Cedex 03, France Tél : 02 40 37 42 38 (N° interne : 8238) Membre de l'Association Française d'Halieutique https://www.association-francaise-halieutique.fr/

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erreur assez similaire en V4.4.2.5
by Sigrid LEHUTA March 4, 2020

March 4, 2020

org.hibernate.service.spi.ServiceException: Unable to create requested service [org.hibernate.engine.jdbc.env.spi.JdbcEnvironment] at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:271) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:233) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:210) at org.hibernate.engine.jdbc.internal.JdbcServicesImpl.configure(JdbcServicesImpl.java:51) at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.configureService(StandardServiceRegistryImpl.java:94) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:242) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:210) at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.handleTypes(MetadataBuildingProcess.java:352) at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:111) at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.build(MetadataBuildingProcess.java:83) at org.hibernate.boot.internal.MetadataBuilderImpl.build(MetadataBuilderImpl.java:417) at org.hibernate.boot.internal.MetadataBuilderImpl.build(MetadataBuilderImpl.java:86) at org.nuiton.topia.migration.TopiaMigrationEngine.preInit(TopiaMigrationEngine.java:244) at org.nuiton.topia.framework.TopiaContextImpl.preInitServices(TopiaContextImpl.java:270) at org.nuiton.topia.framework.TopiaContextImpl. (TopiaContextImpl.java:222) at org.nuiton.topia.TopiaContextFactory.getContext(TopiaContextFactory.java:182) at fr.ifremer.isisfish.datastore.DataStorage.getStorage(DataStorage.java:213) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.regionChange(ParamsHandler.java:170) at fr.ifremer.isisfish.ui.simulator.ParamsHandler.lambda$regionChange$1(ParamsHandler.java:256) at java.awt.event.InvocationEvent.dispatch(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$500(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.WaitDispatchSupport$2.run(Unknown Source) at java.awt.WaitDispatchSupport$4.run(Unknown Source) at java.awt.WaitDispatchSupport$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.awt.WaitDispatchSupport.enter(Unknown Source) at java.awt.Dialog.show(Unknown Source) at java.awt.Component.show(Unknown Source) at java.awt.Component.setVisible(Unknown Source) at java.awt.Window.setVisible(Unknown Source) at java.awt.Dialog.setVisible(Unknown Source) at org.jdesktop.swingx.JXErrorPane$1.run(JXErrorPane.java:398) at org.jdesktop.swingx.JXErrorPane.showDialog(JXErrorPane.java:411) at fr.ifremer.isisfish.ui.util.ErrorHelper.showErrorDialog(ErrorHelper.java:65) at fr.ifremer.isisfish.IsisFish.lambda$null$0(IsisFish.java:691) at java.lang.ThreadGroup.uncaughtException(Unknown Source) at java.lang.ThreadGroup.uncaughtException(Unknown Source) at java.awt.EventDispatchThread.processException(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) Caused by: org.hibernate.HibernateException: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: Row {1} not found in primary index "PUBLIC.SYS_DATA: 180" [90143-197] at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:63) at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.configureService(StandardServiceRegistryImpl.java:94) at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:242) at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:210) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.buildJdbcConnectionAccess(JdbcEnvironmentInitiator.java:145) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:66) at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:35) at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.initiateService(StandardServiceRegistryImpl.java:88) at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:259) ... 52 more Caused by: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: Row {1} not found in primary index "PUBLIC.SYS_DATA: 180" [90143-197] at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:512) at com.zaxxer.hikari.pool.HikariPool. (HikariPool.java:105) at com.zaxxer.hikari.HikariDataSource. (HikariDataSource.java:71) at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:59) ... 60 more Caused by: org.h2.jdbc.JdbcSQLException: Row {1} not found in primary index "PUBLIC.SYS_DATA: 180" [90143-197] at org.h2.message.DbException.getJdbcSQLException(DbException.java:357) at org.h2.message.DbException.get(DbException.java:179) at org.h2.message.DbException.get(DbException.java:155) at org.h2.mvstore.db.MVPrimaryIndex.getRow(MVPrimaryIndex.java:202) at org.h2.mvstore.db.MVTable.getRow(MVTable.java:492) at org.h2.mvstore.db.MVSecondaryIndex$MVStoreCursor.get(MVSecondaryIndex.java:493) at org.h2.engine.Database.open(Database.java:768) at org.h2.engine.Database.openDatabase(Database.java:286) at org.h2.engine.Database. (Database.java:280) at org.h2.engine.Engine.openSession(Engine.java:66) at org.h2.engine.Engine.openSession(Engine.java:179) at org.h2.engine.Engine.createSessionAndValidate(Engine.java:157) at org.h2.engine.Engine.createSession(Engine.java:140) at org.h2.engine.Engine.createSession(Engine.java:28) at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:351) at org.h2.jdbc.JdbcConnection. (JdbcConnection.java:124) at org.h2.jdbc.JdbcConnection. (JdbcConnection.java:103) at org.h2.Driver.connect(Driver.java:69) at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:95) at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:101) at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:341) at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:506) ... 63 more -- NB : Please note that I do not work on Monday mornings and Wednesday afternoons Sigrid LEHUTA ~ ><> ~ Ecologie et Modèles pour l'Halieutique IFREMER Nantes Rue de l'Ile d'Yeu - BP 21105, 44311 Nantes Cedex 03, France Tél : 02 40 37 42 38 (N° interne : 8238) Membre de l'Association Française d'Halieutique https://www.association-francaise-halieutique.fr/

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Rule "removeCatchOther" : null pointer exception
by slehuta March 4, 2020

March 4, 2020

Bonsoir, je m'arrache les cheveux depuis quelques heures sur cette regle de gestion son objectif : retirer des captures en prélevant dans la matrice d'abondance par zone et groupe. La difficulte : les captures sont disponibles cumulees sur toutes les pop d'une espece. On decide donc que si plusieurs pop de l espece sont presentes dans une zone dans laquelle on preleve, on preleve les captures au prorata de l abondance de la pop dans la zone. Autre subtilité enquiquinante, toutes les pop n occupent pas les memes zones (cf mon mail suivant). je crois avoir reussi a contourner tout ca mais il me sort maintenant un null pointer exception pour un bete booleen qui est pourtant declaré ! Voyez vous ce que j'ai raté ? MERCI !!!! pj : - la regle + fichier de captures à prelever - la base - ci dessous le debug 2020-03-03 22:23:43,009 INFO [pool-3-thread-1] (SubProcessSimulationLauncher.java:251) subProcessSimulate - SubProcess finished (status = 0) 2020-03-03 22:23:43,317 INFO [monitor-thread] (SimulationControl.java:206) setText - Simulation terminée 2020-03-03 22:23:43,330 WARN [monitor-thread] (SimulationMonitor.java:533) checkProgression - Simulation exception : java.lang.NullPointerException at rules.removeCatchOther.postAction_aroundBody4(removeCatchOther.java:174) at rules.removeCatchOther$AjcClosure5.run(removeCatchOther.java:1) at org.aspectj.runtime.reflect.JoinPointImpl.proceed(JoinPointImpl.java:149) at fr.ifremer.isisfish.aspect.RuleAspect.makeTimedCall(RuleAspect.java:121) at fr.ifremer.isisfish.aspect.RuleAspect.initPostCall(RuleAspect.java:99) at rules.removeCatchOther.postAction(removeCatchOther.java:161) at simulators.DefaultSimulator.simulate(DefaultSimulator.java:276) at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.localSimulateSameThread(InProcessSimulatorLauncher.java:430) at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher$SimThread.run(InProcessSimulatorLauncher.java:260)

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type Doc deprecated
by Sigrid LEHUTA March 4, 2020

March 4, 2020

Un warning dans une regle de gestion J'ai voulu importer la nouvelle library doc mais apparement c est pas bien : Merci WARNING in C:\Users\slehuta\isis-fish-4\isis-community-database\rules\removeCatchOther.java (at line 69) import fr.ifremer.isisfish.util.Doc; ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ The type Doc is deprecated ---------- 2. ERROR in C:\Users\slehuta\isis-fish-4\isis-community-database\rules\removeCatchOther.java (at line 69) import fr.ifremer.isisfish.util.Doc; ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ The import fr.ifremer.isisfish.util.Doc collides with another import statement ---------- 2 problems (1 error, 1 warning) -- NB : Please note that I do not work on Monday mornings and Wednesday afternoons Sigrid LEHUTA ~ ><> ~ Ecologie et Modèles pour l'Halieutique IFREMER Nantes Rue de l'Ile d'Yeu - BP 21105, 44311 Nantes Cedex 03, France Tél : 02 40 37 42 38 (N° interne : 8238) Membre de l'Association Française d'Halieutique https://www.association-francaise-halieutique.fr/

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comment tester si double != null
by slehuta March 4, 2020

March 4, 2020

re bonjour, je cherche a tester si une matrice contient une valeur pour un jeu de coordonnées semantics [group,zone] connu. J'ai testé if(mamatrix.getValue(group,zone) != null)... mais un double ne peut pas etre testé pour null... comment on teste alors a part a tester si mamatrix.getSubMatrix(0,group).getSubMatrix(1,zone) != null) ? Merci

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