- Isis-fish-data-commits - mailman.cloud.codelutin.com

r384 - trunk
by echatellier＠users.forge.codelutin.com 01 Mar '16

01 Mar '16

Author: echatellier Date: 2016-03-01 17:42:22 +0100 (Tue, 01 Mar 2016) New Revision: 384 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/384 Log: Prepare release Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2016-03-01 10:43:26 UTC (rev 383) +++ trunk/pom.xml 2016-03-01 16:42:22 UTC (rev 384) @@ -14,7 +14,7 @@ <packaging>jar</packaging>  - <version>4.4.0-SNAPSHOT</version> + <version>4.4.0</version>  <description>Data for Isis-fish</description> @@ -74,7 +74,7 @@ <dependency> <groupId>fr.ifremer</groupId> <artifactId>isis-fish</artifactId> - <version>4.4.0.0-SNAPSHOT</version> + <version>4.4.0.0</version> <scope>compile</scope> </dependency> </dependencies>

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r383 - trunk/exports
by echatellier＠users.forge.codelutin.com 01 Mar '16

01 Mar '16

Author: echatellier Date: 2016-03-01 11:43:26 +0100 (Tue, 01 Mar 2016) New Revision: 383 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/383 Log: R?\195?\169?\195?\169criture des exports par pas de temps. Modified: trunk/exports/Abundances.java trunk/exports/Biomasses.java trunk/exports/CapturesNombre.java trunk/exports/CapturesNombreStrategies.java trunk/exports/CapturesPoids.java trunk/exports/CapturesPoidsStrategies.java trunk/exports/CellsDefinition.java trunk/exports/EffortsMetier.java trunk/exports/Lbar.java trunk/exports/MetierZone.java trunk/exports/NonActivite.java trunk/exports/OwnerMargin.java trunk/exports/Recruitment.java trunk/exports/RegionDefinition.java trunk/exports/RejetsNombre.java trunk/exports/RejetsPoids.java trunk/exports/VesselMargin.java trunk/exports/ZonesDefinition.java Modified: trunk/exports/Abundances.java =================================================================== --- trunk/exports/Abundances.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/Abundances.java 2016-03-01 10:43:26 UTC (rev 383) @@ -29,7 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixAbundance; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -36,16 +36,8 @@ /** * Abundances.java - * - * Created: 1 septembre 2006 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.3 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ */ -public class Abundances implements Export { +public class Abundances implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(Abundances.class); @@ -71,10 +63,10 @@ @Override public String getDescription() { - return "Exporte les abondances en nombre tableau avec des lignes pop;id;zone;date;nombre."; + return "Exporte les abondances en nombre tableau avec des lignes step;pop;id;zone;nombre."; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { for (Population pop : simulation.getParameter().getPopulations()) { MatrixND mat = simulation.getResultStorage().getMatrix(pop, MatrixAbundance.NAME); @@ -89,5 +81,31 @@ out.write(pop.getName() + ";" + group.getId() + ";" + zone.getName() + ";" + step.getStep() + ";" + val + "\n"); } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;group;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixAbundance.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + PopulationGroup group = (PopulationGroup) sems[0]; + Zone zone = (Zone) sems[1]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + group.getId() + ";" + zone.getName() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/Biomasses.java =================================================================== --- trunk/exports/Biomasses.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/Biomasses.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixBiomass; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -36,16 +36,8 @@ /** * Biomasses.java - * - * Created: 23 novembre 2006 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.3 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ */ -public class Biomasses implements Export { +public class Biomasses implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(Biomasses.class); @@ -71,10 +63,10 @@ @Override public String getDescription() { - return "Exporte les biomasses tableau avec des lignes pop;id;zone;date;nombre"; + return "Exporte les biomasses tableau avec des lignes step;pop;id;zone;nombre"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { for (Population pop : simulation.getParameter().getPopulations()) { MatrixND mat = simulation.getResultStorage().getMatrix(pop, MatrixBiomass.NAME); @@ -89,5 +81,32 @@ out.write(pop.getName() + ";" + group.getId() + ";" + zone.getName() + ";" + step.getStep() + ";" + val + "\n"); } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;group;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixBiomass.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + PopulationGroup group = (PopulationGroup) sems[0]; + Zone zone = (Zone) sems[1]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + group.getId() + ";" + zone.getName() + ";" + val + "\n"); + } + } + + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/CapturesNombre.java =================================================================== --- trunk/exports/CapturesNombre.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/CapturesNombre.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -26,7 +26,7 @@ import fr.ifremer.isisfish.entities.Population; import fr.ifremer.isisfish.entities.PopulationGroup; import fr.ifremer.isisfish.entities.Zone; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixCatchPerStrategyMetPerZonePop; @@ -41,14 +41,9 @@ * CapturesNombre.java * * Export des captures en nombre de la forme : - * Population ; Métier ; Groupe ; Zone ; Pas de temps ; Valeur - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.4 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ + * Pas de temps ; Population ; Métier ; Groupe ; Zone ; Valeur */ -public class CapturesNombre implements Export { +public class CapturesNombre implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(CapturesNombre.class); @@ -77,7 +72,7 @@ return "Export les captures en nombre de la simulation. tableau pop;metier;id;zone;nombre"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TimeStep lastStep = simulation.getResultStorage().getLastStep(); @@ -103,5 +98,35 @@ } } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;metier;group;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixCatchPerStrategyMetPerZonePop.NAME); + mat = mat.sumOverDim(0); //sum on strategy + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + Metier metier = (Metier) sems[1]; + PopulationGroup group = (PopulationGroup) sems[2]; + Zone zone = (Zone) sems[3]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + + metier.getName() + ";" + group.getId() + ";" + + zone.getName() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/CapturesNombreStrategies.java =================================================================== --- trunk/exports/CapturesNombreStrategies.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/CapturesNombreStrategies.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2014 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -27,7 +27,7 @@ import fr.ifremer.isisfish.entities.PopulationGroup; import fr.ifremer.isisfish.entities.Strategy; import fr.ifremer.isisfish.entities.Zone; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixCatchPerStrategyMetPerZonePop; @@ -42,14 +42,9 @@ * CapturesNombreStrategies.java * * Export des captures en nombre de la forme : - * Population ; Stratégie ; Métier ; Groupe ; Zone ; Pas de temps ; Valeur - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.4 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ + * Pas de temps ; Population ; Stratégie ; Métier ; Groupe ; Zone ; Valeur */ -public class CapturesNombreStrategies implements Export { +public class CapturesNombreStrategies implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(CapturesNombreStrategies.class); @@ -75,10 +70,10 @@ @Override public String getDescription() { - return "Export les captures en nombre de la simulation. tableau pop;strategie;metier;id;zone;nombre"; + return "Export les captures en nombre de la simulation. tableau step;pop;strategie;metier;id;zone;nombre"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TimeStep lastStep = simulation.getResultStorage().getLastStep(); @@ -106,5 +101,35 @@ } } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;strategy;metier;group;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixCatchPerStrategyMetPerZonePop.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + Metier metier = (Metier) sems[1]; + PopulationGroup group = (PopulationGroup) sems[2]; + Zone zone = (Zone) sems[3]; + Strategy strategy = (Strategy) sems[0]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + strategy.getName() + ";" + + metier.getName() + ";" + group.getId() + ";" + + zone.getName() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/CapturesPoids.java =================================================================== --- trunk/exports/CapturesPoids.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/CapturesPoids.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -26,7 +26,7 @@ import fr.ifremer.isisfish.entities.Population; import fr.ifremer.isisfish.entities.PopulationGroup; import fr.ifremer.isisfish.entities.Zone; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixCatchWeightPerStrategyMetPerZonePop; @@ -41,14 +41,9 @@ * CapturesPoids.java * * Export des captures en poids de la forme : - * Population ; Métier ; Groupe ; Zone ; Pas de temps ; Valeur - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.4 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ + * Pas de temps ; Population ; Métier ; Groupe ; Zone ; Valeur */ -public class CapturesPoids implements Export { +public class CapturesPoids implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(CapturesPoids.class); @@ -74,10 +69,10 @@ @Override public String getDescription() { - return "Export les captures en poids de la simulation. tableau pop;metier;id;zone;nombre"; + return "Export les captures en poids de la simulation. tableau step;pop;metier;id;zone;nombre"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TimeStep lastStep = simulation.getResultStorage().getLastStep(); @@ -97,12 +92,40 @@ Zone zone = (Zone) sems[3]; double val = i.getValue(); - out.write(pop.getName() + ";" + metier.getName() + ";" - + group.getId() + ";" + zone.getName() + ";" - + step.getStep() + ";" + val + "\n"); + out.write(step.getStep() + ";" + pop.getName() + ";" + metier.getName() + ";" + + group.getId() + ";" + zone.getName() + ";" + val + "\n"); } } } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;metier;group;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixCatchWeightPerStrategyMetPerZonePop.NAME); + mat = mat.sumOverDim(0); //sum on strategy + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + Metier metier = (Metier) sems[1]; + PopulationGroup group = (PopulationGroup) sems[2]; + Zone zone = (Zone) sems[3]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + metier.getName() + ";" + + group.getId() + ";" + zone.getName() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/CapturesPoidsStrategies.java =================================================================== --- trunk/exports/CapturesPoidsStrategies.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/CapturesPoidsStrategies.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -27,7 +27,7 @@ import fr.ifremer.isisfish.entities.PopulationGroup; import fr.ifremer.isisfish.entities.Strategy; import fr.ifremer.isisfish.entities.Zone; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixCatchWeightPerStrategyMetPerZonePop; @@ -42,14 +42,9 @@ * CapturesPoidsStrategies.java * * Export des captures en poids de la forme : - * Population ; Stratégie ; Métier ; Groupe ; Zone ; Pas de temps ; Valeur - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.4 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ + * Pas de temps ; Population ; Stratégie ; Métier ; Groupe ; Zone ; Valeur */ -public class CapturesPoidsStrategies implements Export { +public class CapturesPoidsStrategies implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(CapturesPoidsStrategies.class); @@ -75,10 +70,10 @@ @Override public String getDescription() { - return "Export les captures en poids de la simulation. tableau pop;strategie;metier;id;zone;nombre"; + return "Export les captures en poids de la simulation. tableau step;pop;strategie;metier;id;zone;nombre"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TimeStep lastStep = simulation.getResultStorage().getLastStep(); @@ -107,5 +102,35 @@ } } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;strategy;metier;group;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixCatchWeightPerStrategyMetPerZonePop.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + Metier metier = (Metier) sems[1]; + PopulationGroup group = (PopulationGroup) sems[2]; + Zone zone = (Zone) sems[3]; + Strategy strategy = (Strategy) sems[0]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + strategy.getName() + ";" + + metier.getName() + ";" + group.getId() + ";" + + zone.getName() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/CellsDefinition.java =================================================================== --- trunk/exports/CellsDefinition.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/CellsDefinition.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2014 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -30,20 +30,13 @@ import fr.ifremer.isisfish.datastore.SimulationStorage; import fr.ifremer.isisfish.entities.Cell; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; +import fr.ifremer.isisfish.types.TimeStep; /** * CellsDefinition.java - * - * Created: 17 janvier 2007 - * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> - * @version $Revision: 1.2 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ */ -public class CellsDefinition implements Export { +public class CellsDefinition implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(CellsDefinition.class); @@ -75,7 +68,7 @@ return "Export cell's position(longitute/latitute)"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TopiaContext tx = simulation.getStorage().beginTransaction(); List<Cell> cells = SimulationStorage.getFisheryRegion(tx).getCell(); @@ -85,5 +78,27 @@ } tx.closeContext(); + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("cell;longitude;latitude\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + TopiaContext tx = simulation.getStorage().beginTransaction(); + List<Cell> cells = SimulationStorage.getFisheryRegion(tx).getCell(); + + for (Cell cell : cells) { + out.write(cell + ";" + cell.getLongitude() + ";" + cell.getLatitude() + "\n"); + } + + tx.closeContext(); + } } Modified: trunk/exports/EffortsMetier.java =================================================================== --- trunk/exports/EffortsMetier.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/EffortsMetier.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixEffortPerStrategyMet; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -36,16 +36,8 @@ /** * EffortsMetier.java - * - * Created: 23 novembre 2006 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.3 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ */ -public class EffortsMetier implements Export { +public class EffortsMetier implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(EffortsMetier.class); @@ -71,10 +63,10 @@ @Override public String getDescription() { - return "retourne un tableau strategie;metier;date;effort"; + return "retourne un tableau step;strategie;metier;effort"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { MatrixND mat = simulation.getResultStorage().getMatrix(MatrixEffortPerStrategyMet.NAME); for (MatrixIterator i = mat.iterator(); i.hasNext();) { @@ -87,5 +79,29 @@ double val = i.getValue(); out.write(str.getName() +";"+ metier.getName() +";"+ step.getStep() +";"+ val +"\n"); } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;strategy;metier;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + MatrixND mat = simulation.getResultStorage().getMatrix(step, MatrixEffortPerStrategyMet.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object [] sems = i.getSemanticsCoordinates(); + Strategy str = (Strategy)sems[0]; + Metier metier = (Metier)sems[1]; + + double val = i.getValue(); + out.write(step.getStep() +";" + str.getName() + ";" + metier.getName() + ";" + val + "\n"); + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/Lbar.java =================================================================== --- trunk/exports/Lbar.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/Lbar.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2015 Ifremer, CodeLutin + * Copyright (C) 2015 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixLbar; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -36,13 +36,8 @@ /** * Population mean length. - * - * Created: 03/2015 - * - * @author lgasche <anonymous(a)labs.libre-entreprise.org> - * @version $Revision$ */ -public class Lbar implements Export { +public class Lbar implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(Lbar.class); @@ -68,10 +63,10 @@ @Override public String getDescription() { - return "Exporte les longueurs moyennes par pop par zone en tableau avec des lignes pop;zone;date;longueur."; + return "Exporte les longueurs moyennes par pop par zone en tableau avec des lignes step;pop;zone;longueur."; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { for (Population pop : simulation.getParameter().getPopulations()) { MatrixND mat = simulation.getResultStorage().getMatrix(pop, MatrixLbar.NAME); @@ -85,5 +80,30 @@ out.write(pop.getName() + ";" + zone.getName() + ";" + step.getStep() + ";" + val + "\n"); } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixLbar.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + Zone zone = (Zone) sems[0]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + zone.getName() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/MetierZone.java =================================================================== --- trunk/exports/MetierZone.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/MetierZone.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,6 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixMetierZone; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -35,16 +36,8 @@ /** * MetierZone.java - * - * Created: 17 janvier 2007 - * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> - * @version $Revision: 1.3 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ */ -public class MetierZone implements Export { +public class MetierZone implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(MetierZone.class); @@ -73,7 +66,7 @@ return "Export zone used by metier during simulation"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TimeStep lastStep = simulation.getResultStorage().getLastStep(); @@ -90,5 +83,28 @@ } } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;metier;zone\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + MatrixND mat = simulation.getResultStorage().getMatrix(step, MatrixMetierZone.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + if (i.getValue() == 1) { + Object metier = i.getSemanticsCoordinates()[0]; + Object zone = i.getSemanticsCoordinates()[1]; + out.write(step.getStep() + ";" + metier + ";" + zone + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/NonActivite.java =================================================================== --- trunk/exports/NonActivite.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/NonActivite.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixNoActivity; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -36,16 +36,8 @@ /** * NonActivite.java - * - * Created: 23 novembre 2006 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.3 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ */ -public class NonActivite implements Export { +public class NonActivite implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(NonActivite.class); @@ -71,10 +63,10 @@ @Override public String getDescription() { - return "retourne un tableau strategie;metier;date;proportion"; + return "retourne un tableau step;strategie;metier;proportion"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { MatrixND mat = simulation.getResultStorage().getMatrix(MatrixNoActivity.NAME); for (MatrixIterator i = mat.iterator(); i.hasNext();) { @@ -87,5 +79,29 @@ double val = i.getValue(); out.write(str.getName() +";"+ metier.getName() +";"+ step.getStep() +";"+ val +"\n"); } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;strategy;metier;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + MatrixND mat = simulation.getResultStorage().getMatrix(step, MatrixNoActivity.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object [] sems = i.getSemanticsCoordinates(); + Strategy str = (Strategy)sems[0]; + Metier metier = (Metier)sems[1]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + str.getName() + ";" + metier.getName() + ";" + val +"\n"); + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/OwnerMargin.java =================================================================== --- trunk/exports/OwnerMargin.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/OwnerMargin.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixOwnerMarginOverVariableCostsPerStrategyPerVessel; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -45,7 +45,7 @@ * Last update: $Date: 2007-05-24 09:30:07 $ * by : $Author: bpoussin $ */ -public class OwnerMargin implements Export { +public class OwnerMargin implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(OwnerMargin.class); @@ -74,7 +74,7 @@ return "Exporte les profits du patrons, retourne un tableau strategy;date;value"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { MatrixND mat = simulation.getResultStorage().getMatrix(MatrixOwnerMarginOverVariableCostsPerStrategyPerVessel.NAME); for (MatrixIterator i = mat.iterator(); i.hasNext();) { @@ -86,5 +86,28 @@ double val = i.getValue(); out.write(str.getName() +";"+ step.getStep() +";"+ val +"\n"); } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;strategy;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + MatrixND mat = simulation.getResultStorage().getMatrix(step, MatrixOwnerMarginOverVariableCostsPerStrategyPerVessel.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + Strategy str = (Strategy)sems[0]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + str.getName() + ";" + val + "\n"); + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/Recruitment.java =================================================================== --- trunk/exports/Recruitment.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/Recruitment.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2015 Ifremer, CodeLutin + * Copyright (C) 2015 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixRecruitment; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -36,13 +36,8 @@ /** * Recruitment. - * - * Created: 03/2015 - * - * @author lgasche <anonymous(a)labs.libre-entreprise.org> - * @version $Revision$ */ -public class Recruitment implements Export { +public class Recruitment implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(Recruitment.class); @@ -71,7 +66,7 @@ return "Exporte le recrutement par pop par en tableau avec des lignes pop;date;recrutement."; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { for (Population pop : simulation.getParameter().getPopulations()) { MatrixND mat = simulation.getResultStorage().getMatrix(pop, MatrixRecruitment.NAME); @@ -84,5 +79,28 @@ out.write(pop.getName() + ";" + step.getStep() + ";" + val + "\n"); } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixRecruitment.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + + double val = i.getValue(); + out.write(pop.getName() + ";" + step.getStep() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/RegionDefinition.java =================================================================== --- trunk/exports/RegionDefinition.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/RegionDefinition.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,21 +29,14 @@ import org.nuiton.topia.TopiaContext; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; +import fr.ifremer.isisfish.types.TimeStep; import fr.ifremer.isisfish.datastore.SimulationStorage; /** * RegionDefinition.java - * - * Created: 17 janvier 2007 - * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> - * @version $Revision: 1.3 $ - * - * Last update: $Date: 2007-05-24 10:05:22 $ - * by : $Author: bpoussin $ */ -public class RegionDefinition implements Export { +public class RegionDefinition implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(RegionDefinition.class); @@ -75,7 +68,7 @@ return "Export region description"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { // NomRegion LatituteMin LatitudeMax LongitudeMin LongitudeMax PasLatitude PasLongitude TopiaContext tx = simulation.getStorage().beginTransaction(); @@ -91,5 +84,32 @@ "\n"); tx.closeContext(); + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("region;minlatitude;maxlalitude;minlongitude;maxlongitude;celllengthlatitude;celllengthlongitude\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + TopiaContext tx = simulation.getStorage().beginTransaction(); + FisheryRegion region = SimulationStorage.getFisheryRegion(tx); + + out.write(region.getName() + ";" + + region.getMinLatitude() + ";" + + region.getMaxLatitude() + ";" + + region.getMinLongitude() + ";" + + region.getMaxLongitude() + ";" + + region.getCellLengthLatitude() + ";" + + region.getCellLengthLongitude() + + "\n"); + + tx.closeContext(); + } } Modified: trunk/exports/RejetsNombre.java =================================================================== --- trunk/exports/RejetsNombre.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/RejetsNombre.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -33,21 +33,14 @@ import fr.ifremer.isisfish.entities.Population; import fr.ifremer.isisfish.entities.PopulationGroup; import fr.ifremer.isisfish.entities.Zone; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixDiscardsPerStrMetPerZonePop; /** * RejetsNombre.java - * - * Created: 23 novembre 2006 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.4 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ */ -public class RejetsNombre implements Export { +public class RejetsNombre implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(RejetsNombre.class); @@ -73,10 +66,10 @@ @Override public String getDescription() { - return "Export les rejets en nombre de la simulation. tableau pop;metier;id;zone;date;nombre"; + return "Export les rejets en nombre de la simulation. tableau step;pop;metier;id;zone;nombre"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TimeStep lastStep = simulation.getResultStorage().getLastStep(); @@ -103,5 +96,34 @@ } } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;metier;group;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixDiscardsPerStrMetPerZonePop.NAME); + mat = mat.sumOverDim(0); //sum on strategy + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + Metier metier = (Metier) sems[1]; + PopulationGroup group = (PopulationGroup) sems[2]; + Zone zone = (Zone) sems[3]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + metier.getName() + ";" + + group.getId() + ";" + zone.getName() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/RejetsPoids.java =================================================================== --- trunk/exports/RejetsPoids.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/RejetsPoids.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -33,21 +33,14 @@ import fr.ifremer.isisfish.entities.Population; import fr.ifremer.isisfish.entities.PopulationGroup; import fr.ifremer.isisfish.entities.Zone; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixDiscardsWeightPerStrMetPerZonePop; /** * RejetsPoids.java - * - * Created: 23 novembre 2006 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.4 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ */ -public class RejetsPoids implements Export { +public class RejetsPoids implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(RejetsPoids.class); @@ -73,10 +66,10 @@ @Override public String getDescription() { - return "Export les rejets en poids de la simulation. tableau pop;metier;id;zone;date;nombre"; + return "Export les rejets en poids de la simulation. tableau step;pop;metier;id;zone;nombre"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TimeStep lastStep = simulation.getResultStorage().getLastStep(); @@ -103,5 +96,34 @@ } } } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;population;metier;group;zone;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + for (Population pop : simulation.getParameter().getPopulations()) { + MatrixND mat = simulation.getResultStorage().getMatrix(step, pop, MatrixDiscardsWeightPerStrMetPerZonePop.NAME); + mat = mat.sumOverDim(0); //sum on strategy + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object[] sems = i.getSemanticsCoordinates(); + Metier metier = (Metier) sems[1]; + PopulationGroup group = (PopulationGroup) sems[2]; + Zone zone = (Zone) sems[3]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + pop.getName() + ";" + metier.getName() + ";" + + group.getId() + ";" + zone.getName() + ";" + val + "\n"); + } + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/VesselMargin.java =================================================================== --- trunk/exports/VesselMargin.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/VesselMargin.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,7 @@ import org.nuiton.math.matrix.*; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import resultinfos.MatrixVesselMarginOverVariableCostsPerStrategyPerVessel; import fr.ifremer.isisfish.datastore.SimulationStorage; @@ -36,16 +36,8 @@ /** * VesselMargin.java - * - * Created: 23 novembre 2006 - * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> - * @version $Revision: 1.3 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ */ -public class VesselMargin implements Export { +public class VesselMargin implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(VesselMargin.class); @@ -71,10 +63,10 @@ @Override public String getDescription() { - return "cvs out strategy;date;value"; + return "cvs out step;strategy;value"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { MatrixND mat = simulation.getResultStorage().getMatrix(MatrixVesselMarginOverVariableCostsPerStrategyPerVessel.NAME); for (MatrixIterator i = mat.iterator(); i.hasNext();) { @@ -86,5 +78,28 @@ double val = i.getValue(); out.write(str.getName() +";"+ step.getStep() +";"+ val +"\n"); } + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;strategy;value\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + MatrixND mat = simulation.getResultStorage().getMatrix(step, MatrixVesselMarginOverVariableCostsPerStrategyPerVessel.NAME); + for (MatrixIterator i = mat.iterator(); i.hasNext();) { + i.next(); + Object [] sems = i.getSemanticsCoordinates(); + Strategy str = (Strategy)sems[0]; + + double val = i.getValue(); + out.write(step.getStep() + ";" + str.getName() + ";" + val + "\n"); + } + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } } Modified: trunk/exports/ZonesDefinition.java =================================================================== --- trunk/exports/ZonesDefinition.java 2016-02-12 10:12:36 UTC (rev 382) +++ trunk/exports/ZonesDefinition.java 2016-03-01 10:43:26 UTC (rev 383) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -30,22 +30,14 @@ import org.nuiton.topia.TopiaContext; import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.export.Export; +import fr.ifremer.isisfish.export.ExportStep; import fr.ifremer.isisfish.types.TimeStep; import fr.ifremer.isisfish.datastore.SimulationStorage; /** * ZonesDefinition.java - * - * Created: 17 janvier 2007 - * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> - * @version $Revision: 1.2 $ - * - * Last update: $Date: 2007-05-24 09:30:07 $ - * by : $Author: bpoussin $ */ -public class ZonesDefinition implements Export { +public class ZonesDefinition implements ExportStep { /** to use log facility, just put in your code: log.info("..."); */ static private Log log = LogFactory.getLog(ZonesDefinition.class); @@ -77,7 +69,7 @@ return "Export cell's zone constitution"; } - @Override + /*@Override public void export(SimulationStorage simulation, Writer out) throws Exception { TopiaContext tx = simulation.getStorage().beginTransaction(); List<Zone> zones = SimulationStorage.getFisheryRegion(tx).getZone(); @@ -93,5 +85,29 @@ } tx.closeContext(); + }*/ + + @Override + public void exportBegin(SimulationStorage simulation, Writer out) throws Exception { + out.write("step;zone;cell\n"); } + + @Override + public void export(SimulationStorage simulation, TimeStep step, Writer out) throws Exception { + TopiaContext tx = simulation.getStorage().beginTransaction(); + List<Zone> zones = SimulationStorage.getFisheryRegion(tx).getZone(); + + for (Zone zone : zones) { + for (Cell cell : zone.getCell()) { + out.write(step.getStep() + ";" + zone + ";" + cell + "\n"); + } + } + + tx.closeContext(); + } + + @Override + public void exportEnd(SimulationStorage simulation, Writer out) throws Exception { + + } }

1 0

r382 - in trunk: exports rules scripts simulationplans simulators
by echatellier＠users.forge.codelutin.com 12 Feb '16

12 Feb '16

Author: echatellier Date: 2016-02-12 11:12:36 +0100 (Fri, 12 Feb 2016) New Revision: 382 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/382 Log: Fix javadoc on java 8 Modified: trunk/exports/Abundances.java trunk/exports/Biomasses.java trunk/exports/CapturesNombre.java trunk/exports/CapturesNombreStrategies.java trunk/exports/CapturesPoids.java trunk/exports/CapturesPoidsStrategies.java trunk/exports/CellsDefinition.java trunk/exports/EffortsMetier.java trunk/exports/Lbar.java trunk/exports/MetierZone.java trunk/exports/NonActivite.java trunk/exports/OwnerMargin.java trunk/exports/Recruitment.java trunk/exports/RegionDefinition.java trunk/exports/RejetsNombre.java trunk/exports/RejetsPoids.java trunk/exports/VesselMargin.java trunk/exports/ZonesDefinition.java trunk/rules/Cantonnement.java trunk/rules/CantonnementPreSimu.java trunk/rules/ChangementParamControlablePresimu.java trunk/rules/EffortReduction.java trunk/rules/GraviteVPUE1.java trunk/rules/InterdictionEngin.java trunk/rules/InterdictionEnginPreSimu.java trunk/rules/TACpoids.java trunk/scripts/ObjectiveFunctionBaranov.java trunk/scripts/RuleUtil.java trunk/simulationplans/SimulationNumberRestriction.java trunk/simulators/DefaultSimulator.java Modified: trunk/exports/Abundances.java =================================================================== --- trunk/exports/Abundances.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/Abundances.java 2016-02-12 10:12:36 UTC (rev 382) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2015 Ifremer, CodeLutin, Chatellier Eric + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin, Chatellier Eric * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -39,7 +39,7 @@ * * Created: 1 septembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/exports/Biomasses.java =================================================================== --- trunk/exports/Biomasses.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/Biomasses.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 23 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/exports/CapturesNombre.java =================================================================== --- trunk/exports/CapturesNombre.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/CapturesNombre.java 2016-02-12 10:12:36 UTC (rev 382) @@ -43,7 +43,7 @@ * Export des captures en nombre de la forme : * Population ; Métier ; Groupe ; Zone ; Pas de temps ; Valeur * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.4 $ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ Modified: trunk/exports/CapturesNombreStrategies.java =================================================================== --- trunk/exports/CapturesNombreStrategies.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/CapturesNombreStrategies.java 2016-02-12 10:12:36 UTC (rev 382) @@ -44,7 +44,7 @@ * Export des captures en nombre de la forme : * Population ; Stratégie ; Métier ; Groupe ; Zone ; Pas de temps ; Valeur * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.4 $ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ Modified: trunk/exports/CapturesPoids.java =================================================================== --- trunk/exports/CapturesPoids.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/CapturesPoids.java 2016-02-12 10:12:36 UTC (rev 382) @@ -43,7 +43,7 @@ * Export des captures en poids de la forme : * Population ; Métier ; Groupe ; Zone ; Pas de temps ; Valeur * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.4 $ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ Modified: trunk/exports/CapturesPoidsStrategies.java =================================================================== --- trunk/exports/CapturesPoidsStrategies.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/CapturesPoidsStrategies.java 2016-02-12 10:12:36 UTC (rev 382) @@ -44,7 +44,7 @@ * Export des captures en poids de la forme : * Population ; Stratégie ; Métier ; Groupe ; Zone ; Pas de temps ; Valeur * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.4 $ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ Modified: trunk/exports/CellsDefinition.java =================================================================== --- trunk/exports/CellsDefinition.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/CellsDefinition.java 2016-02-12 10:12:36 UTC (rev 382) @@ -37,7 +37,7 @@ * * Created: 17 janvier 2007 * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> + * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> * @version $Revision: 1.2 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/exports/EffortsMetier.java =================================================================== --- trunk/exports/EffortsMetier.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/EffortsMetier.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 23 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/exports/Lbar.java =================================================================== --- trunk/exports/Lbar.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/Lbar.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 03/2015 * - * @author lgasche <anonymous(a)labs.libre-entreprise.org> + * @author lgasche <anonymous(a)labs.libre-entreprise.org> * @version $Revision$ */ public class Lbar implements Export { Modified: trunk/exports/MetierZone.java =================================================================== --- trunk/exports/MetierZone.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/MetierZone.java 2016-02-12 10:12:36 UTC (rev 382) @@ -38,7 +38,7 @@ * * Created: 17 janvier 2007 * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> + * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/exports/NonActivite.java =================================================================== --- trunk/exports/NonActivite.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/NonActivite.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 23 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/exports/OwnerMargin.java =================================================================== --- trunk/exports/OwnerMargin.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/OwnerMargin.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 23 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/exports/Recruitment.java =================================================================== --- trunk/exports/Recruitment.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/Recruitment.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 03/2015 * - * @author lgasche <anonymous(a)labs.libre-entreprise.org> + * @author lgasche <anonymous(a)labs.libre-entreprise.org> * @version $Revision$ */ public class Recruitment implements Export { Modified: trunk/exports/RegionDefinition.java =================================================================== --- trunk/exports/RegionDefinition.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/RegionDefinition.java 2016-02-12 10:12:36 UTC (rev 382) @@ -37,7 +37,7 @@ * * Created: 17 janvier 2007 * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> + * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-05-24 10:05:22 $ Modified: trunk/exports/RejetsNombre.java =================================================================== --- trunk/exports/RejetsNombre.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/RejetsNombre.java 2016-02-12 10:12:36 UTC (rev 382) @@ -42,7 +42,7 @@ * * Created: 23 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.4 $ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ Modified: trunk/exports/RejetsPoids.java =================================================================== --- trunk/exports/RejetsPoids.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/RejetsPoids.java 2016-02-12 10:12:36 UTC (rev 382) @@ -42,7 +42,7 @@ * * Created: 23 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.4 $ * * Last update: $Date: 2007-05-24 09:30:07 $ by : $Author: bpoussin $ Modified: trunk/exports/VesselMargin.java =================================================================== --- trunk/exports/VesselMargin.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/VesselMargin.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 23 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/exports/ZonesDefinition.java =================================================================== --- trunk/exports/ZonesDefinition.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/exports/ZonesDefinition.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 17 janvier 2007 * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> + * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> * @version $Revision: 1.2 $ * * Last update: $Date: 2007-05-24 09:30:07 $ Modified: trunk/rules/Cantonnement.java =================================================================== --- trunk/rules/Cantonnement.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/rules/Cantonnement.java 2016-02-12 10:12:36 UTC (rev 382) @@ -52,7 +52,7 @@ * * Created: 30 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.5 $ * * Last update: $Date: 2007-11-02 17:41:41 $ Modified: trunk/rules/CantonnementPreSimu.java =================================================================== --- trunk/rules/CantonnementPreSimu.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/rules/CantonnementPreSimu.java 2016-02-12 10:12:36 UTC (rev 382) @@ -50,7 +50,7 @@ * * Created: 30 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.2 $ * * Last update: $Date: 2007-01-24 18:25:34 $ Modified: trunk/rules/ChangementParamControlablePresimu.java =================================================================== --- trunk/rules/ChangementParamControlablePresimu.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/rules/ChangementParamControlablePresimu.java 2016-02-12 10:12:36 UTC (rev 382) @@ -53,7 +53,7 @@ * * Created: 30 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.1 $ * * Last update: $Date: 2007-01-24 18:25:34 $ Modified: trunk/rules/EffortReduction.java =================================================================== --- trunk/rules/EffortReduction.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/rules/EffortReduction.java 2016-02-12 10:12:36 UTC (rev 382) @@ -39,7 +39,7 @@ * * Created: 3 septembre 2008 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision$ */ public class EffortReduction extends AbstractRule { Modified: trunk/rules/GraviteVPUE1.java =================================================================== --- trunk/rules/GraviteVPUE1.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/rules/GraviteVPUE1.java 2016-02-12 10:12:36 UTC (rev 382) @@ -46,7 +46,7 @@ * * Created: 26 aout 2008 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision$ * * Last update: $Date$ Modified: trunk/rules/InterdictionEngin.java =================================================================== --- trunk/rules/InterdictionEngin.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/rules/InterdictionEngin.java 2016-02-12 10:12:36 UTC (rev 382) @@ -47,7 +47,7 @@ * * Created: 30 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.1 $ * * Last update: $Date: 2007-01-24 18:25:34 $ Modified: trunk/rules/InterdictionEnginPreSimu.java =================================================================== --- trunk/rules/InterdictionEnginPreSimu.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/rules/InterdictionEnginPreSimu.java 2016-02-12 10:12:36 UTC (rev 382) @@ -48,7 +48,7 @@ * * Created: 30 novembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.1 $ * * Last update: $Date: 2007-01-24 18:25:34 $ Modified: trunk/rules/TACpoids.java =================================================================== --- trunk/rules/TACpoids.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/rules/TACpoids.java 2016-02-12 10:12:36 UTC (rev 382) @@ -53,14 +53,16 @@ * TAC peut-etre utilise pour les differents TAC, en proportion des effectifs * et/ou avec survie ou non. * + * <ul> * <li>Pour utiliser le tac proportionnel, il faut mettre dans le parametre - * propTac une valeur > 0, le TAC sera alors recalcule a chaque mois de janvier. + * propTac une valeur > 0, le TAC sera alors recalcule a chaque mois de janvier.</li> * <li>Pour utiliser la survie il faut mettre dans le parametre propSurvie une - * valeur > 0, automatiquement les suvie seront ajoute aux effectifs + * valeur > 0, automatiquement les suvie seront ajoute aux effectifs</li> + * </ul> * * Created: 7 septembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 290607 $ Modified: trunk/scripts/ObjectiveFunctionBaranov.java =================================================================== --- trunk/scripts/ObjectiveFunctionBaranov.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/scripts/ObjectiveFunctionBaranov.java 2016-02-12 10:12:36 UTC (rev 382) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2012, 2014 Ifremer, CodeLutin, lgasche + * Copyright (C) 2012, 2016 Ifremer, CodeLutin, lgasche * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -29,7 +29,7 @@ * * Created: 10 aout 2012 * - * @author lgasche <user.name(a)vcs.hostName> + * @author lgasche <user.name(a)vcs.hostName> * @version $Revision$ * * Last update: $Date$ Modified: trunk/scripts/RuleUtil.java =================================================================== --- trunk/scripts/RuleUtil.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/scripts/RuleUtil.java 2016-02-12 10:12:36 UTC (rev 382) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2014 Ifremer, CodeLutin, Chatellier Eric + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin, Chatellier Eric * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -38,7 +38,7 @@ * * Created: 6 septembre 2006 * - * @author anonymous <anonymous(a)labs.libre-entreprise.org> + * @author anonymous <anonymous(a)labs.libre-entreprise.org> * @version $Revision: 1.3 $ * * Last update: $Date: 2007-11-20 15:51:05 $ Modified: trunk/simulationplans/SimulationNumberRestriction.java =================================================================== --- trunk/simulationplans/SimulationNumberRestriction.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/simulationplans/SimulationNumberRestriction.java 2016-02-12 10:12:36 UTC (rev 382) @@ -2,7 +2,7 @@ * #%L * IsisFish data * %% - * Copyright (C) 2006 - 2014 Ifremer, CodeLutin + * Copyright (C) 2006 - 2016 Ifremer, CodeLutin * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as @@ -34,7 +34,7 @@ * * Created: 2 mars 2007 * - * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> + * @author bpoussin <bpoussin(a)labs.libre-entreprise.org> * @version $Revision: 1.2 $ * * Last update: $Date: 2007-03-09 15:27:21 $ by : $Author: bpoussin $ Modified: trunk/simulators/DefaultSimulator.java =================================================================== --- trunk/simulators/DefaultSimulator.java 2016-01-18 09:39:47 UTC (rev 381) +++ trunk/simulators/DefaultSimulator.java 2016-02-12 10:12:36 UTC (rev 382) @@ -74,6 +74,7 @@ * overwrite this method to return you SiMatrix version * @param context * @return + * @throws TopiaException */ protected SiMatrix newSiMatrix(SimulationContext context) throws TopiaException { return new SiMatrix(context); @@ -85,6 +86,8 @@ * @param context * @param siMatrix * @return + * @throws TopiaException + * @throws StorageException */ protected GravityModel newGravityModel(SimulationContext context, SiMatrix siMatrix) throws TopiaException, StorageException { return new GravityModel(context, siMatrix);

1 0

r381 - tags/4.3.1/rules
by echatellier＠users.forge.codelutin.com 18 Jan '16

18 Jan '16

Author: echatellier Date: 2016-01-18 10:39:47 +0100 (Mon, 18 Jan 2016) New Revision: 381 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/381 Log: Fix concurrentModificationException Modified: tags/4.3.1/rules/CantonnementPreSimu.java Modified: tags/4.3.1/rules/CantonnementPreSimu.java =================================================================== --- tags/4.3.1/rules/CantonnementPreSimu.java 2016-01-18 09:10:26 UTC (rev 380) +++ tags/4.3.1/rules/CantonnementPreSimu.java 2016-01-18 09:39:47 UTC (rev 381) @@ -157,7 +157,8 @@ } else { log.info("l engin du métier est bien concerné"); - List<MetierSeasonInfo> saisons = metier.getMetierSeasonInfo(); + // copy to update metier season info in loop + List<MetierSeasonInfo> saisons = new ArrayList<>(metier.getMetierSeasonInfo()); for (MetierSeasonInfo saisonmetier : saisons){ int inter = siMatrix.nbCellInter(saisonmetier.getZone(), param_zone); if (inter != 0) {

1 0

r380 - trunk/rules
by echatellier＠users.forge.codelutin.com 18 Jan '16

18 Jan '16

Author: echatellier Date: 2016-01-18 10:10:26 +0100 (Mon, 18 Jan 2016) New Revision: 380 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/380 Log: Fix concurrentModificationException Modified: trunk/rules/CantonnementPreSimu.java Modified: trunk/rules/CantonnementPreSimu.java =================================================================== --- trunk/rules/CantonnementPreSimu.java 2015-10-28 13:58:16 UTC (rev 379) +++ trunk/rules/CantonnementPreSimu.java 2016-01-18 09:10:26 UTC (rev 380) @@ -157,7 +157,8 @@ } else { log.info("l engin du métier est bien concerné"); - List<MetierSeasonInfo> saisons = metier.getMetierSeasonInfo(); + // copy list to update metier season info in the loop + List<MetierSeasonInfo> saisons = new ArrayList<>(metier.getMetierSeasonInfo()); for (MetierSeasonInfo saisonmetier : saisons){ int inter = siMatrix.nbCellInter(saisonmetier.getZone(), param_zone); if (inter != 0) {

1 0

r379 - trunk/scripts
by echatellier＠users.forge.codelutin.com 28 Oct '15

28 Oct '15

Author: echatellier Date: 2015-10-28 14:58:16 +0100 (Wed, 28 Oct 2015) New Revision: 379 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/379 Log: Remove pop dimension in F result Modified: trunk/scripts/SiMatrix.java Modified: trunk/scripts/SiMatrix.java =================================================================== --- trunk/scripts/SiMatrix.java 2015-10-27 16:36:34 UTC (rev 378) +++ trunk/scripts/SiMatrix.java 2015-10-28 13:58:16 UTC (rev 379) @@ -1158,13 +1158,12 @@ double Mgroup = 0; double NgroupRef = 0; - List<Population> populations = Collections.singletonList(pop); List<PopulationGroup> groups = pop.getPopulationGroup(); MatrixND tfgMatrix = MatrixFactory.getInstance().create( MatrixFishingMortalityPerGroup.NAME, - new List[]{populations, groups}, // On travaille sur les pops ET les groupes - new String[]{n("Population"), n("Group")}); + new List[]{groups}, // On travaille sur les groupes + new String[]{n("Group")}); for (PopulationGroup group : groups) { @@ -1195,12 +1194,8 @@ catchPerStrategy = catchPerStrategy.sumOverDim(0); // Strategy catchPerStrategy = catchPerStrategy.sumOverDim(1); // Metier catchPerStrategy = catchPerStrategy.sumOverDim(3); // Zone : une pop peut avoir plusieurs zonespop dans ISIS - List semgroup = catchPerStrategy.getSemantic(2); - catchPerStrategy = catchPerStrategy.reduce(); // Enleve les dimensions de taille 1 - catchPerStrategy.setSemantic(0, semgroup); // Ne plait pas a Eric + catchPerStrategy = catchPerStrategy.reduceDims(0, 1, 3); // Enleve les dimensions de taille 1 Cgroup = catchPerStrategy.getValue(group); - //log.info("Cgroup = " + Cgroup + "Year=" + step.getYear()); - //log.info("catchPerStrategy = " + catchPerStrategy + "Year=" + step.getYear()); // compute total mortality by suming naturalDeathRate and fishingMortalityOtherFleetsMatrix MatrixND naturalDeathRatePop = pop.getNaturalDeathRateMatrix(); @@ -1217,7 +1212,8 @@ abundanceReferenceMonth = Month.JANUARY; } TimeStep refStep = new TimeStep(12 * step.getYear() + abundanceReferenceMonth.getMonthNumber()); - MatrixND abundancePopRef = resManager.getMatrix(refStep, pop, MatrixAbundanceBeginMonth.NAME); // Le timestep 0 correspond a janvier de la premiere annee et les annees sont numerotees a partir de zero + // Le timestep 0 correspond a janvier de la premiere annee et les annees sont numerotees a partir de zero + MatrixND abundancePopRef = resManager.getMatrix(refStep, pop, MatrixAbundanceBeginMonth.NAME); abundancePopRef = abundancePopRef.sumOverDim(1); // somme sur Zone abundancePopRef = abundancePopRef.reduce(); NgroupRef = abundancePopRef.getValue(group); @@ -1224,22 +1220,16 @@ //log.info("NgroupRef = " + NgroupJan + "Year=" + step.getYear()); ObjectiveFunction f = new ObjectiveFunctionBaranov(Cgroup, Mgroup, NgroupRef); - Fgroup = MinimisationUtil.fmin(0.0,2.0,1.0e-10, f); // step ?? + Fgroup = MinimisationUtil.fmin(0.0, 2.0, 1.0e-10, f); // step ?? - //log.info("Fgroup = " + Fgroup); + tfgMatrix.setValue(group, Fgroup); // Bien faire attention a l'endroit ou on met cette etape (quelle boucle) ? - tfgMatrix.setValue(pop, group, Fgroup); // Bien faire attention a l'endroit ou on met cette etape (quelle boucle) ? - } else { //Fgroup = 0; // Ce n'est plus une valeur unique mais une matrice, est-ce que cette notation peut fonctionner ? - tfgMatrix.setValue(pop, group, 0); // Bien faire attention a l'endroit ou on met cette etape (quelle boucle) ? + tfgMatrix.setValue(group, 0); // Bien faire attention a l'endroit ou on met cette etape (quelle boucle) ? } } - //log.info("tfgMatrix = " + tfgMatrix); - //log.info("tfg.DimensionNames = " + Arrays.toString(tfgMatrix.getDimensionNames())); - //log.info("tfg.Semantics = " + Arrays.toString(tfgMatrix.getSemantics())); - return tfgMatrix; } @@ -1251,23 +1241,19 @@ public MatrixND totalFishingMortality(TimeStep step, Population pop, MatrixND fishingMortalityPerGroup) throws TopiaException { MatrixND tfmMatrix = fishingMortalityPerGroup.copy(); tfmMatrix.setName(MatrixTotalFishingMortality.NAME); - //log.info("tfmMatrix = " + tfmMatrix); List<PopulationGroup> groups = pop.getPopulationGroup(); int groupMin = pop.getFbarGroupMin(); int groupMax = pop.getFbarGroupMax(); - int Nbre = (int)groupMax - (int)groupMin + 1; - //log.info("Nbre = " + Nbre); + int groupCount = (int)groupMax - (int)groupMin + 1; for (PopulationGroup group : groups) { if (group.getId() == groupMin) { // MatrixND getSubMatrix(int dim, Object, int nb) - tfmMatrix = tfmMatrix.getSubMatrix(1, group, Nbre); - tfmMatrix = tfmMatrix.meanOverDim(1); + tfmMatrix = tfmMatrix.getSubMatrix(0, group, groupCount); + tfmMatrix = tfmMatrix.meanOverDim(0); tfmMatrix = tfmMatrix.reduce(); - //log.info("tfm.DimensionNames = " + Arrays.toString(tfmMatrix.getDimensionNames())); - //log.info("tfm.Semantics = " + Arrays.toString(tfmMatrix.getSemantics())); } }

1 0

r378 - trunk/scripts
by echatellier＠users.forge.codelutin.com 27 Oct '15

27 Oct '15

Author: echatellier Date: 2015-10-27 17:36:34 +0100 (Tue, 27 Oct 2015) New Revision: 378 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/378 Log: refs #7666: Ajouter l'?\195?\169quation de mortalit?\195?\169 par p?\195?\170che Other Modified: trunk/scripts/SiMatrix.java Modified: trunk/scripts/SiMatrix.java =================================================================== --- trunk/scripts/SiMatrix.java 2015-10-22 11:45:06 UTC (rev 377) +++ trunk/scripts/SiMatrix.java 2015-10-27 16:36:34 UTC (rev 378) @@ -1184,10 +1184,10 @@ catchPerStrategyTemp = resManager.getMatrix(loopstep, pop, MatrixCatchPerStrategyMetPerZonePop.NAME); } if (catchPerStrategy == null) { - catchPerStrategy = catchPerStrategyTemp.copy(); - // On clone la matrice car si on fait les operations sur celle contenue dans le cache on la modifie et donc on recupere des resultats faux. + catchPerStrategy = catchPerStrategyTemp.copy(); + // On clone la matrice car si on fait les operations sur celle contenue dans le cache on la modifie et donc on recupere des resultats faux. } else { - catchPerStrategy = catchPerStrategy.add(catchPerStrategyTemp); // Pour avoir la somme des captures sur les 12 mois + catchPerStrategy = catchPerStrategy.add(catchPerStrategyTemp); // Pour avoir la somme des captures sur les 12 mois } } @@ -1202,10 +1202,14 @@ //log.info("Cgroup = " + Cgroup + "Year=" + step.getYear()); //log.info("catchPerStrategy = " + catchPerStrategy + "Year=" + step.getYear()); + // compute total mortality by suming naturalDeathRate and fishingMortalityOtherFleetsMatrix MatrixND naturalDeathRatePop = pop.getNaturalDeathRateMatrix(); naturalDeathRatePop = naturalDeathRatePop.meanOverDim(1); // moyenne sur Zone naturalDeathRatePop = naturalDeathRatePop.reduce(); // Enleve les dimensions de taille 1 - Mgroup = naturalDeathRatePop.getValue(group); + MatrixND fishingMortalityOther = pop.getFishingMortalityOtherFleetsMatrix(); + fishingMortalityOther = fishingMortalityOther.meanOverDim(1); // moyenne sur Zone + fishingMortalityOther = fishingMortalityOther.reduce(); // Enleve les dimensions de taille 1 + Mgroup = naturalDeathRatePop.getValue(group) + fishingMortalityOther.getValue(group); //log.info("Mgroup= " + Mgroup + "Year=" + step.getYear()); Month abundanceReferenceMonth = pop.getAbundanceReferenceMonth();

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r377 - in trunk: . scripts
by echatellier＠users.forge.codelutin.com 22 Oct '15

22 Oct '15

Author: echatellier Date: 2015-10-22 13:45:06 +0200 (Thu, 22 Oct 2015) New Revision: 377 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/377 Log: fixes #7666: Ajouter l'?\195?\169quation de mortalit?\195?\169 par p?\195?\170che Other Modified: trunk/pom.xml trunk/scripts/SiMatrix.java trunk/scripts/SiMatrixEffortByCell.java Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2015-10-15 08:50:55 UTC (rev 376) +++ trunk/pom.xml 2015-10-22 11:45:06 UTC (rev 377) @@ -36,7 +36,7 @@ <plugins> <plugin> <artifactId>maven-compiler-plugin</artifactId> - <version>3.2</version> + <version>3.3</version> <configuration> <source>1.7</source> <target>1.7</target> @@ -49,7 +49,7 @@ <plugin> <groupId>org.codehaus.mojo</groupId> <artifactId>exec-maven-plugin</artifactId> - <version>1.3.2</version> + <version>1.4.0</version> <executions> <execution> <goals> Modified: trunk/scripts/SiMatrix.java =================================================================== --- trunk/scripts/SiMatrix.java 2015-10-15 08:50:55 UTC (rev 376) +++ trunk/scripts/SiMatrix.java 2015-10-22 11:45:06 UTC (rev 377) @@ -236,6 +236,21 @@ return result; } + /** + * Since 4.4, FishingMortalityOtherFleets must be added everewhere NaturalDeathRate was + * used. + * + * @param step current step + * @param group group + * @param zone zone + * @return + */ + public double getTotalDeathRate(TimeStep step, PopulationGroup group, Zone zone) { + double n = group.getNaturalDeathRate(zone); + double o = group.getFishingMortalityOtherFleets(zone); + return n + o; + } + /////////////////////////////////////////////////////////////////////////// // // Toutes les methodes suivantes ne sont utiles que pour @@ -442,7 +457,7 @@ */ private double totalCatchRate(TimeStep step, PopulationGroup group, Zone zone, double totalFishingMortality) throws TopiaException { - double M = group.getNaturalDeathRate(zone) / Month.NUMBER_OF_MONTH; + double M = getTotalDeathRate(step, group, zone) / Month.NUMBER_OF_MONTH; if (M == 0) { // normalement il devrait y avoir de la mortalite naturelle if (log.isWarnEnabled()) { @@ -935,7 +950,7 @@ PopulationGroup group = groups.get(g); for (int z = 0; z < zones.size(); z++) { Zone zone = zones.get(z); - double M = group.getNaturalDeathRate(zone) + double M = getTotalDeathRate(step, group, zone) / (double) Month.NUMBER_OF_MONTH; double value = (double) Math.exp(-M); @@ -962,7 +977,7 @@ IsisFishException { double F = totalFishingMortality(step, matrixFishingMortality) .getValue(group, zone); //totalFishingMortality(step, group, zone); // rem perf: totalFishingMortality a deja ete calcule - double M = group.getNaturalDeathRate(zone) + double M = getTotalDeathRate(step, group, zone) / (double) Month.NUMBER_OF_MONTH; double result = Math.exp(-(F + M)); Modified: trunk/scripts/SiMatrixEffortByCell.java =================================================================== --- trunk/scripts/SiMatrixEffortByCell.java 2015-10-15 08:50:55 UTC (rev 376) +++ trunk/scripts/SiMatrixEffortByCell.java 2015-10-22 11:45:06 UTC (rev 377) @@ -256,7 +256,7 @@ double F = totalFishingMortalityPerCell(step, matrixFishingMortalityPerCell).getValue(group, zone, cell); //totalFishingMortality(step, group, zone); // rem perf: totalFishingMortality a deja ete calcule - double M = group.getNaturalDeathRate(zone) + double M = getTotalDeathRate(step, group, zone) / (double) Month.NUMBER_OF_MONTH; double result = (double) Math.exp(-(F + M)); @@ -499,7 +499,7 @@ private double totalCatchRatePerCell(TimeStep step, PopulationGroup group, Zone zone, double totalFishingMortalityPerCell) throws TopiaException { - double M = group.getNaturalDeathRate(zone) / Month.NUMBER_OF_MONTH; + double M = getTotalDeathRate(step, group, zone) / Month.NUMBER_OF_MONTH; if (M == 0) { // normalement il devrait y avoir de la mortalite naturelle if (log.isWarnEnabled()) {

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r376 - trunk/resultinfos
by echatellier＠users.forge.codelutin.com 15 Oct '15

15 Oct '15

Author: echatellier Date: 2015-10-15 10:50:55 +0200 (Thu, 15 Oct 2015) New Revision: 376 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/376 Log: Add comment Modified: trunk/resultinfos/MatrixTotalFishingMortality.java Modified: trunk/resultinfos/MatrixTotalFishingMortality.java =================================================================== --- trunk/resultinfos/MatrixTotalFishingMortality.java 2015-10-15 08:49:28 UTC (rev 375) +++ trunk/resultinfos/MatrixTotalFishingMortality.java 2015-10-15 08:50:55 UTC (rev 376) @@ -24,6 +24,8 @@ import fr.ifremer.isisfish.result.AbstractResultInfo; /** + * F. + * * Matrix with 1 dimension * Dimension 1 : TimeStep */

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r375 - trunk/scripts
by echatellier＠users.forge.codelutin.com 15 Oct '15

15 Oct '15

Author: echatellier Date: 2015-10-15 10:49:28 +0200 (Thu, 15 Oct 2015) New Revision: 375 Url: http://forge.codelutin.com/projects/isis-fish-data/repository/revisions/375 Log: Fix migration error Modified: trunk/scripts/SiMatrix.java Modified: trunk/scripts/SiMatrix.java =================================================================== --- trunk/scripts/SiMatrix.java 2015-10-15 08:36:16 UTC (rev 374) +++ trunk/scripts/SiMatrix.java 2015-10-15 08:49:28 UTC (rev 375) @@ -1035,7 +1035,7 @@ List<Zone> zones = (List<Zone>)N.getSemantic(1); MatrixND result = MatrixFactory.getInstance().create( - MatrixBiomassBeginMonth.NAME, new List[] { groups, zones }, + MatrixAbundanceBeginMonth.NAME, new List[] { groups, zones }, new String[] { n("Groups"), n("Zones") }); for (int g = 0; g < groups.size(); g++) {

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