/*
 * #%L
 * IsisFish data
 * %%
 * Copyright (C) 2015 Ifremer, Code Lutin, Benjamin Poussin
 * %%
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as
 * published by the Free Software Foundation, either version 3 of the 
 * License, or (at your option) any later version.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public 
 * License along with this program.  If not, see
 * <http://www.gnu.org/licenses/gpl-3.0.html>.
 * #L%
 */

package scripts;

import static org.nuiton.i18n.I18n.n;
import fr.ifremer.isisfish.IsisFishException;
import fr.ifremer.isisfish.entities.Cell;

import fr.ifremer.isisfish.entities.Gear;
import fr.ifremer.isisfish.entities.Metier;
import fr.ifremer.isisfish.entities.MetierSeasonInfo;
import fr.ifremer.isisfish.entities.Population;
import fr.ifremer.isisfish.entities.PopulationGroup;
import fr.ifremer.isisfish.entities.PopulationSeasonInfo;
import fr.ifremer.isisfish.entities.Selectivity;

import fr.ifremer.isisfish.entities.Strategy;
import fr.ifremer.isisfish.entities.StrategyMonthInfo;
import fr.ifremer.isisfish.entities.Zone;


import fr.ifremer.isisfish.simulator.SimulationContext;
import fr.ifremer.isisfish.types.Month;
import fr.ifremer.isisfish.types.TimeStep;

import java.util.Collection;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.nuiton.math.matrix.MatrixFactory;
import org.nuiton.math.matrix.MatrixIterator;
import org.nuiton.math.matrix.MatrixND;
import org.nuiton.topia.TopiaException;

/**



 *
 * @author poussin
 * @version $Revision: 352 $
 *
 * Last update: $Date: 2015-06-09 18:43:41 +0200 (jeu., 16 avr. 2015) $
 * by : $Author: slehuta $
 */
public class SiMatrixEffortByCell_Sid extends SiMatrixEffortByCell {
	/** to use log facility, just put in your code: log.info(\"...\"); */
    static private Log log = LogFactory.getLog(SiMatrixEffortByCell_Sid.class);
    public SiMatrixEffortByCell_Sid(SimulationContext context) throws TopiaException {

        super(context);
    }
	
	public MatrixND matrixBiomassEndMonth(MatrixND N, Population pop,
            TimeStep step) {
        return matrixToWeightMatrix(step, 0, ResultName.MATRIX_BIOMASS_END_MONTH, N);}
		
       public MatrixND matrixAbondanceEndMonth(MatrixND N, Population pop,
            TimeStep step) {
        List<PopulationGroup> groups = (List<PopulationGroup>)N.getSemantic(0);
        List<Zone> zones = (List<Zone>)N.getSemantic(1);

        MatrixND result = MatrixFactory.getInstance().create(
                ResultName.MATRIX_ABUNDANCE_END_MONTH, new List[] { groups, zones },
                new String[] { n("Groups"), n("Zones") });

        for (int g = 0; g < groups.size(); g++) {
            PopulationGroup group = groups.get(g);
            for (int z = 0; z < zones.size(); z++) {
                Zone zone = zones.get(z);
                double value = N.getValue(group, zone);
                result.setValue(group, zone, value);
            }
        }
        return result;
    }	
	
	
}