- Isis-fish-docs-commits - mailman.cloud.codelutin.com

r93 - trunk/src/site/rst/v4/user/tutorials
by echatellier＠users.forge.codelutin.com 07 Sep '12

07 Sep '12

Author: echatellier Date: 2012-09-07 10:05:06 +0200 (Fri, 07 Sep 2012) New Revision: 93 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/93 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-09-07 08:03:00 UTC (rev 92) +++ trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-09-07 08:05:06 UTC (rev 93) @@ -31,16 +31,16 @@ Voir l'état de la queue de simulations caparmor ----------------------------------------------- - +:: qstat Voir l'etat d'avancement d'un job --------------------------------- - +:: qstat -f <iddujob> Exemple: - +:: qstat -f 1234567[].service0 Lire les logs

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r92 - trunk/src/site/rst/v4/user/tutorials
by echatellier＠users.forge.codelutin.com 07 Sep '12

07 Sep '12

Author: echatellier Date: 2012-09-07 10:03:00 +0200 (Fri, 07 Sep 2012) New Revision: 92 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/92 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-09-07 07:48:00 UTC (rev 91) +++ trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-09-07 08:03:00 UTC (rev 92) @@ -34,6 +34,15 @@ qstat +Voir l'etat d'avancement d'un job +--------------------------------- + + qstat -f <iddujob> + +Exemple: + + qstat -f 1234567[].service0 + Lire les logs -------------

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r91 - trunk/src/site/rst/v4/user/tutorials
by echatellier＠users.forge.codelutin.com 07 Sep '12

07 Sep '12

Author: echatellier Date: 2012-09-07 09:48:00 +0200 (Fri, 07 Sep 2012) New Revision: 91 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/91 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-08-22 15:47:58 UTC (rev 90) +++ trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-09-07 07:48:00 UTC (rev 91) @@ -29,6 +29,11 @@ Sur CAPARMOR quand vous êtes logués sous votre nom, tous les fichiers de simulation sont dans le répertoire isis-tmp +Voir l'état de la queue de simulations caparmor +----------------------------------------------- + + qstat + Lire les logs -------------

1 0

r90 - in trunk/src/site: . en en/resources en/resources/css en/resources/downloads en/resources/images en/rst rst
by jcouteau＠users.forge.codelutin.com 22 Aug '12

22 Aug '12

Author: jcouteau Date: 2012-08-22 17:47:58 +0200 (Wed, 22 Aug 2012) New Revision: 90 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/90 Log: Add english site Added: trunk/src/site/en/resources/ trunk/src/site/en/resources/css/ trunk/src/site/en/resources/css/site.css trunk/src/site/en/resources/downloads/ trunk/src/site/en/resources/downloads/DataBaseAnchovyBoBHindcast_commented.zip trunk/src/site/en/resources/downloads/FLIsis_1.1.2.zip trunk/src/site/en/resources/downloads/GolfeDeGascogneDemoV3.3.0.3.zip trunk/src/site/en/resources/images/ trunk/src/site/en/resources/images/IsisFishModel.png trunk/src/site/en/resources/images/ifremer.png trunk/src/site/en/resources/images/isis-simulation.png trunk/src/site/en/resources/images/isislogo.png trunk/src/site/en/rst/contact.rst trunk/src/site/en/rst/download.rst trunk/src/site/en/rst/license.rst trunk/src/site/en/rst/listStats.rst trunk/src/site/en/rst/publications.rst trunk/src/site/en/rst/research.rst Modified: trunk/src/site/en/rst/index.rst trunk/src/site/rst/contact.rst trunk/src/site/rst/index.rst trunk/src/site/site_en.xml trunk/src/site/site_fr.xml Added: trunk/src/site/en/resources/css/site.css =================================================================== --- trunk/src/site/en/resources/css/site.css (rev 0) +++ trunk/src/site/en/resources/css/site.css 2012-08-22 15:47:58 UTC (rev 90) @@ -0,0 +1,227 @@ +/* + * #%L + * IsisFish + * + * $Id: site.css 3124 2010-11-29 18:14:09Z chatellier $ + * $HeadURL$ + * %% + * Copyright (C) 1999 - 2010 Ifremer, Code Lutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 2 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-2.0.html>. + * #L% + */ +#paypal { + display: none; +} + +#Google-AdSense, #Google-search, #googleAnalytics { + display: none; +} + +body { + background: url(http://flotte.ifremer.fr/extension/ifremer-v4/design/skin-ifremer-v4/images/theme_blue/decor/page-background.gif) repeat 0% 0%; + width: 960px; + font-family: Verdana, 'Lucida Grande', Lucida, Arial, Helvetica, sans-serif; + font-size: 0.75em; + margin: 0px auto; +} + +#bodyColumn { + padding-top: 25px; +} + +#contentBox { + background: white; + color: dimGray; + padding: 1px 1.95em 1.5em; + border-radius: 5px; +} + +#breadcrumbs { + background: url(http://flotte.ifremer.fr/extension/ifremer-v4/design/skin-ifremer-v4/images/theme_blue/decor/bg-menu.png) repeat 0% 0%; + border: none; + border-radius: 5px; + height: 20px; + line-height: 20px; + color: white; +} + +#breadcrumbs a:link, #breadcrumbs a:visited, #breadcrumbs a:active { + padding-top: 7px; + padding-bottom: 8px; + color: white; + text-shadow: #202020 -1px -1px 1px; +} + +#breadcrumbs a:hover { + text-shadow: none; + color: #044F90; + background: url(http://flotte.ifremer.fr/extension/ifremer-v4/design/skin-ifremer-v4/images/theme_blue/decor/bg-menu-sel.png) repeat-x 0% 0%; +} + +#banner { + border: none; + background: url(http://wwz.ifremer.fr/var/storage/images/medias-ifremer/medias-institut/illustrations/bandeau/199216-2-fre-FR/bandeau_banner_1024.png) no-repeat 0% 0%; + height: 150px; +} + +#bannerLeft { + margin-top: 24px; +} + +#bannerRight { + margin-top: 37px; +} + +#navcolumn { + border-radius: 10px; + background: #00386B; + border: none; + color: #BCE8FE; + margin-bottom: 0px; + margin-left: 3px; + margin-right: 19px; + margin-top: 0px; + width: 153px; + padding: 0; +} + +#navcolumn h5 { + text-align: left; + border: none; + color: #FFDE01; + font-weight: normal; + font-size: 12px; + padding: 11px 7px 12px; + background: url(http://flotte.ifremer.fr/extension/ifremer-v4/design/skin-ifremer-v4/images/theme_blue/decor/bg-menul-top.png) no-repeat 0% 0%; +} + +strong { + font-weight: normal; + color:#FFE600; +} + +#navcolumn { + text-align: right; +} + +#navcolumn > a { + margin-right: 5px; + font-size: x-small; +} + +#navcolumn ul { + text-align: left; + padding: 5px 7px; +} + +#navcolumn li { + background: url(http://flotte.ifremer.fr/extension/ifremer-v4/design/skin-ifremer-v4/images/theme_blue/decor/bullet-menu-on.png) no-repeat 0% 5px; + list-style-type: none; + padding: 0px; + padding-left: 10px; +} + +#navcolumn a:link, #navcolumn a:visited, #navcolumn a:active { + color: #BCE8FE; +} + +#navcolumn a:hover { + color:#FFE600; +} + +#contentBox a:link, #contentBox a:visited, #contentBox a:active { + color: #044F90; +} + +#contentBox a:hover { + color:#044F90; +} + +#footer { + color: white; +} + +.section { + padding: 0px; +} + +h2, h3, h4 { + border: none; + background-color: white; + color: #044F90; + padding: 0px; + border-bottom-style: solid; + border-bottom-width: 1px; + font-weight: normal; + line-height: 1.2em; + margin: 1.4em 0px 1.4em; + text-align: left; +} + +h5 { + border: none; + background-color: white; + color: #044F90; + padding: 0px; + font-weight: normal; + line-height: 1.2em; + margin: 1.4em 0px 1.4em; + text-align: left; +} + +p { + font-size: inherit; +} + +table.bodyTable th, table.bodyTable td { + font-size: 12px; +} + +table.option_list, table.bodyTable { + background-color: white; + border-collapse: collapse; +} + +table.bodyTable tr.b ,table.bodyTable tr.a { + background-color: white; +} + +table.bodyTable th { + background-color: #E8E8E8; + color: #0080CB; +} + +table.bodyTable tr { + color: #044F90; +} + +a.externalLink, a.externalLink:link, a.externalLink:visited, a.externalLink:active, a.externalLink:hover { + background: none; + padding-right: 0; +} + +pre, xmp, plaintext, listing { + background-color: #E8E8E8; + color: #0080CB; + margin :0px; + padding: 5px; + border-radius : 5px; + font-size: 11px; +} + +img { + max-width: 699px; +} Added: trunk/src/site/en/resources/downloads/DataBaseAnchovyBoBHindcast_commented.zip =================================================================== (Binary files differ) Property changes on: trunk/src/site/en/resources/downloads/DataBaseAnchovyBoBHindcast_commented.zip ___________________________________________________________________ Added: svn:mime-type + application/zip Added: trunk/src/site/en/resources/downloads/FLIsis_1.1.2.zip =================================================================== (Binary files differ) Property changes on: trunk/src/site/en/resources/downloads/FLIsis_1.1.2.zip ___________________________________________________________________ Added: svn:mime-type + application/zip Added: trunk/src/site/en/resources/downloads/GolfeDeGascogneDemoV3.3.0.3.zip =================================================================== (Binary files differ) Property changes on: trunk/src/site/en/resources/downloads/GolfeDeGascogneDemoV3.3.0.3.zip ___________________________________________________________________ Added: svn:mime-type + application/zip Added: trunk/src/site/en/resources/images/IsisFishModel.png =================================================================== (Binary files differ) Property changes on: trunk/src/site/en/resources/images/IsisFishModel.png ___________________________________________________________________ Added: svn:mime-type + image/png Added: trunk/src/site/en/resources/images/ifremer.png =================================================================== (Binary files differ) Property changes on: trunk/src/site/en/resources/images/ifremer.png ___________________________________________________________________ Added: svn:mime-type + image/png Added: trunk/src/site/en/resources/images/isis-simulation.png =================================================================== (Binary files differ) Property changes on: trunk/src/site/en/resources/images/isis-simulation.png ___________________________________________________________________ Added: svn:mime-type + image/png Added: trunk/src/site/en/resources/images/isislogo.png =================================================================== (Binary files differ) Property changes on: trunk/src/site/en/resources/images/isislogo.png ___________________________________________________________________ Added: svn:mime-type + image/png Added: trunk/src/site/en/rst/contact.rst =================================================================== --- trunk/src/site/en/rst/contact.rst (rev 0) +++ trunk/src/site/en/rst/contact.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -0,0 +1,94 @@ +.. - +.. * #%L +.. * IsisFish +.. * +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 1999 - 2011 Ifremer, Code Lutin, Chatellier Eric +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 2 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * #L% +.. - + +Contacts/Assistance +=================== + +ISIS-Fish is a development supported by Ifremer but is aimed to be available to +the community. To do so, numerous tools have been put in place to allow a better +communication so that community can exists. + +Mailing lists +------------- + +Several mailing lists have been put in place. Each one of them as a precise +goal. + +** If you have a problem using ISIS-Fish we would like you to use those lists +rather than send us personal e-mails. Your question and its answer can have some +interest for other people, and moreover lots of people from this list can help +you.** + +Even if the most spoken language on those list is French, **you can send your +e-mails in English.** + +You can search through old messages from the lists from the archive page of the +said list. + +`Lists usage statistics`_ + +.. _Lists usage statistics: listStats.html + +List for users +~~~~~~~~~~~~~~ + + * `isis-fish-users(a)list.isis-fish.org <http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-users>`_ + : Mailing-list for ISIS-Fish users (subscription page). + * `Users mailing-list archives <http://list.isis-fish.org/pipermail/isis-fish-users/>`_ + * `isis-fish-data-commits(a)list.isis-fish.org <http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-data-commits>`_ + (read only): Mailing-list receiving notifications of all modifications made + to ISIS-Fish scripts source code (subscription page). + +List for developers +~~~~~~~~~~~~~~~~~~~ + + * `isis-fish-devel(a)list.isis-fish.org <http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-devel>`_ : Mailing-list for software developers + (subscription page). + * `isis-fish-bugreport(a)list.isis-fish.org <http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-bugreport>`_ (read only): List receiving all the + modifications in the bug report tool (subscription page). + * `isis-fish-commits(a)list.isis-fish.org <http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-commits>`_ (read only): List receiving all the + ISIS-Fish source code modifications notifications (subscription page). + +Reporting tools +--------------- + +Those tools allow to keep a mark of all the demands and to see their evolution +in time. + +To avoid spam on those tools, you have to `create an account`_ before +submitting anything. This subscription does not commit yourself to anything. + +Do not hesitate to tell us about any problem you might encounter and improvement +idea in the bug tracking tool. This will help us to make ISIS-Fish evolve. + + * `Bug tracking`_ : To indicate bugs you may find using ISIS-Fish. + * `Feature request`_ : To ask for features you may need in ISIS-Fish. + * `Roadmap`_ : Allow you to see the new features planned for the next versions + and their evolution. + +.. _create an account: http://forge.codelutin.com/account/register +.. _Bug tracking: http://forge.codelutin.com/projects/isis-fish/issues?set_filter=1&tracker_i… +.. _Featue request: http://forge.codelutin.com/projects/isis-fish/issues?set_filter=1&tracker_i… +.. _Roadmap: http://forge.codelutin.com/projects/isis-fish/roadmap \ No newline at end of file Added: trunk/src/site/en/rst/download.rst =================================================================== --- trunk/src/site/en/rst/download.rst (rev 0) +++ trunk/src/site/en/rst/download.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -0,0 +1,72 @@ +.. - +.. * #%L +.. * IsisFish +.. * +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 2 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * #L% +.. - + +===================== +Download ISIS-Fish +===================== + +ISIS-Fish (Java version) +------------------------ + +The Java ISIS-Fish version is the only one supported on this site. You can +download the last version (or older ones) from here. + +Download__ + +__ http://forge.codelutin.com/projects/isis-fish/files + +Golfe de Gascogne base +---------------------- + +This is a demo database (more evolved thant the demo region) usable with +ISIS-Fish 3.3 version and later. + +`Golfe de Gascogne base`_ + +.. _Golfe de Gascogne base: downloads/GolfeDeGascogneDemoV3.3.0.3.zip + +Base Bay of Biscay +------------------ + +A second available base: Bay of Biscay Anchovy ISIS-Fish V3.3.0.8 + +`Base BoB Anchovy`_ + +.. _Base BoB Anchovy: downloads/DataBaseAnchovyBoBHindcast_commented.zip + + +ISIS-Fish (R version) +--------------------- + +The R ISIS-Fish version named FLISIS and part of FLR project is not supported on +this website, but you can download it from here. + +Download__ (last version : January 2009) + +__ downloads/FLIsis_1.1.2.zip + +`Project website`_ + +.. _Project website: http://flr-project.org/doku.php?id=applications:isisflr Modified: trunk/src/site/en/rst/index.rst =================================================================== --- trunk/src/site/en/rst/index.rst 2012-08-22 14:17:44 UTC (rev 89) +++ trunk/src/site/en/rst/index.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -24,7 +24,32 @@ .. - ========= -Isis-fish +ISIS-Fish ========= -ISIS-Fish is fishery simulator. +ISIS-Fish is a complex fishery simulator. It is entirely written in Java. In its +second version, the scripting language used was ECMAScript, since version 3 it +uses directly Java. This allows to do syntactical checks and coloration and +indicate the user the line in error. + +To use ISIS-Fish, you need to have Java installed on your computer. To benefit +all ISIS-Fish features you may need to also install R. + +ISIS-Fish characteristics are : + +- Embedded database, +- Creation of as many fishing areas and populations as you want, +- Creation of rules in scripting language, +- Ability to modify the simulation process using scripting language, +- Ability to run simulation plans by modifying one or more simulation data, +- Ability to run simulations on other computer (supercomputer for example), +- Results displayed spatially (on a map) or temporally (graph), +- Ability to publish simulation results on a server, +- Ability to publish a region on a server. + +This project was initiated and financed by Ifremer. The analysis and technical +realisation were made by different partners : + +- IRIN (Institut de Recherche en Informatique de Nantes - Nantes Computing Research Institute) +- Cogitec (http://www.cogitec.fr) +- Code Lutin (http://www.codelutin.com) \ No newline at end of file Added: trunk/src/site/en/rst/license.rst =================================================================== --- trunk/src/site/en/rst/license.rst (rev 0) +++ trunk/src/site/en/rst/license.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -0,0 +1,310 @@ +.. - +.. * #%L +.. * IsisFish +.. * +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 2 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * #L% +.. - + +Project license +=============== + +:: + + GNU GENERAL PUBLIC LICENSE + Version 2, June 1991 + +Copyright (C) 1989, 1991 Free Software Foundation, Inc., +51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA +Everyone is permitted to copy and distribute verbatim copies +of this license document, but changing it is not allowed. + + Preamble + +The licenses for most software are designed to take away your +freedom to share and change it. By contrast, the GNU General Public +License is intended to guarantee your freedom to share and change free +software--to make sure the software is free for all its users. This +General Public License applies to most of the Free Software +Foundation's software and to any other program whose authors commit to +using it. (Some other Free Software Foundation software is covered by +the GNU Lesser General Public License instead.) You can apply it to +your programs, too. + +When we speak of free software, we are referring to freedom, not +price. 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IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR +REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, +INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING +OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED +TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY +YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER +PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE +POSSIBILITY OF SUCH DAMAGES. + + END OF TERMS AND CONDITIONS Added: trunk/src/site/en/rst/listStats.rst =================================================================== --- trunk/src/site/en/rst/listStats.rst (rev 0) +++ trunk/src/site/en/rst/listStats.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -0,0 +1,105 @@ +.. - +.. * #%L +.. * IsisFish +.. * +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 2 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * #L% +.. - + +Mailing lists statistics +======================== + +Users list - mail number +------------------------ + + * 2003: 0 + * 2004: 0 + * 2005: 850 + * 2006: 755 + * 2007: 1185 + * 2008: 1035 + * 2009: 1183 + +Total for users list: 5008 + +Developers list - mail number +----------------------------- + + * 2003: 12 + * 2004: 92 + * 2005: 848 + * 2006: 524 + * 2007: 652 + * 2008: 344 + * 2009: 613 + +Total for developers list: 3085 + +Bug tracker list - mail number +------------------------------ + + * 2003: 0 + * 2004: 0 + * 2005: 90 + * 2006: 54 + * 2007: 102 + * 2008: 52 + * 2009: 626 + +Total for bug tracker list: 924 + +Commits list - mail number +-------------------------- + + * 2003: 0 + * 2004: 0 + * 2005: 0 + * 2006: 0 + * 2007: 2 + * 2008: 956 + * 2009: 1702 + +Total for commits list: 2660 + +Data-commits list - mail number +------------------------------- + + * 2003: 0 + * 2004: 0 + * 2005: 0 + * 2006: 0 + * 2007: 16 + * 2008: 92 + * 2009: 224 + +Total for data-commits list: 332 + +Total per year +-------------- + + * 2003: 12 + * 2004: 92 + * 2005: 1788 + * 2006: 1333 + * 2007: 1957 + * 2008: 2479 + * 2009: 4348 + +Total : 12009 \ No newline at end of file Added: trunk/src/site/en/rst/publications.rst =================================================================== --- trunk/src/site/en/rst/publications.rst (rev 0) +++ trunk/src/site/en/rst/publications.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -0,0 +1,174 @@ +.. - +.. * #%L +.. * IsisFish +.. * +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 1999 - 2011 Ifremer, Code Lutin, Chatellier +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 2 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * #L% +.. - + +Publications +============ + +Articles +-------- + +===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== +Year Publication Download Original publication +===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== +2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant, 2011. 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part2: Sensitivity analysis and management measures.' **Fisheries Research** 108, Issue 1, Pages 174-183 `Here <https://w3.ifremer.fr/archimer/doc/00030/14115/11337.pdf>`_ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ +2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant (2011) 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part1: Parameterization and simulations.' **Fisheries Research** 108, Issue 1, Pages 163-173 `Here <https://w3.ifremer.fr/archimer/doc/00030/14114/11351.pdf>`_ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ +2011 **Marchal, P.**, Little, L.R., and Thébaud, O., 2011. 'Quota allocation in mixed-fisheries: a bioeconomic modelling approach applied to the Channel flatfish fisheries.' **ICES Journal of Marine Science**, 68, 1580–1591. `Here <https://w3.ifremer.fr/archimer/doc/00044/15492/12971.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ +2010 **Lehuta, S.**, Mahévas, S., Petitgas, P. et Pelletier, D., 2010. 'Combining sensitivity and uncertainty analysis to evaluate the impact of management measures with ISIS–Fish: marine protected areas for the Bay of Biscay anchovy(Engraulis encrasicolus) ﬁshery. **ICES journal of Marine science** 67:1063-1075. `Here <http://archimer.ifremer.fr/doc/00011/12234/9281.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ +2009 **Marchal, P.**, Francis, C., Lallemand, P., Lehuta, S., Mahévas, S., Stokes, K. & Vermard,Y., 2009. 'Catch-quota balancing in mixed-fisheries: a bio-economic modelling approach applied to the New Zealand hoki (Macruronus novaezelandiae) fishery' . **Aquatic Living Resource** 22:483-498. `Here <http://archimer.ifremer.fr/doc/00000/11168/7521.pdf>`_ `ALR <http://www.alr-journal.org/>`_ +2009 **Pelletier, D.** , Mahévas, S., Drouineau, H., Vermard, Y., Thebaud, O., Guyader,O. & Poussin, B., 2009. 'Evaluation of the bioeconomic sustainability of multi-species multi-fleet fisheries under a wide range of policy options using ISIS-Fish.' **Ecological Modelling** 220 (7): pp. 1013-1033. `Here <http://archimer.ifremer.fr/doc/2009/publication-6782.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ +2009 **Kraus, G.** , Pelletier, D., Dubreuil, J., Moellmann, C., Hinrichsen, H., Bastardie, F., Vermard,Y. & Mahévas, S., 2009. 'A model-based evaluation of Marine Protected Areas as fishery management tool for a stock facing strong environmental variability - the example of Eastern Baltic cod (Gadus morhua callarias L.).' **ICES Journal of Marine Science** 66: pp. 109-121. `Here <http://archimer.ifremer.fr/doc/2009/publication-6094.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ +2006 **Drouineau, H.** , S. Mahévas, D. Pelletier, B. Beliaeff. 'Assessing the impact of different management options using ISIS-Fish: the French Merluccius merluccius – Nephrops norvegicus mixed fishery of the Bay of Biscay.' **Aquat. Living Resour.** 19, 15–29 `Here <http://archimer.ifremer.fr/doc/2006/publication-1340.pdf>`_ `ALR <http://www.alr-journal.org/>`_ +2005 **Pelletier, D.** & S. Mahévas. 'Fisheries simulation models for evaluating the impact of management policies, with emphasis on marine protected areas.' **Fish and Fisheries** ; 6 (4) : 307-349. `Here <http://archimer.ifremer.fr/doc/2005/publication-1031.pdf>`_ `Fish and Fisheries <http://www.blackwellpublishing.com/>`_ +2004 **Mahévas, S.** & D. Pelletier, 2004. 'ISIS-Fish, a generic and spatially-explicit simulation tool for evaluating the impact of management measures on fisheries dynamics.' **Ecological Modelling** 171, 65-84. `Here <http://archimer.ifremer.fr/doc/2004/publication-1133.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ +2001 **Pelletier, D.** , S. Mahévas, B. Poussin, J. Bayon, P. André and J.C. Royer. 2001. 'A conceptual model for evaluating the impact of spatial management measures on the dynamics of a mixed fishery', pp. 53-66 In : G. H. Kruse, N. Bez, T. Booth, M. Dorn, S. Hills, R. Lipcius, D. Pelletier, C. Roy, S. Smith, & D. Witherell (eds), Spatial Processes and Management of Marine Populations. University of Alaska Sea Grant, AK-SG-00-04, Fairbanks +===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== + +Communication Posters +--------------------- + +===== ========================================================================================================================================================================================================================================================================= ================================================================================= +Year Publication Download +===== ========================================================================================================================================================================================================================================================================= ================================================================================= +2009 Rocklin D., Pelletier D., Mouillot D., Tomasini JA., Culioli JM. Simulating management scenarios for the spiny lobster fishery in a Mediterranean MPA using ISIS-Fish. Oral communication - International Marine Conservation Congress, Washington DC, 19-24 May +2009 Rocklin D., Pelletier D., Mouillot D., Tomasini JA., Culioli JM. Des modèles et des indicateurs pour optimiser la gestion des stocks de langoustes dans une aire marine protégée par simulation de scénarios avec ISIS-Fish. Poster - Forum AFH, Brest, 30 juin-2 juillet +2008 Vermard, Y., Lehuta, S., Mahevas, S., Thebaud, O., Marchal, P., Gascuel, D., Including dynamic fishermen behaviour in a fisheries simulation model to assess the impact of environmental changes. +2005 D. Pelletier, S. Mahévas, M. Jarraya, M. Capoulade, H. Drouineau, Y. Vermard, F. Bastardie, 2005, Investigating the consequences of Marine Protected Areas upon fish populations and fisheries through ISIS-Fish, a generic simulation tool. +2005 Stéphanie Mahévas, Dominique Pelletier, Hilaire Drouineau, Paul Marchal, Olivier Guyader, Olivier Thebaud, Raul Prellezo, Marina Santurtún , Ane Iriondo, Simulating with ISIS-Fish the dynamics of a North-East Atlantic mixed fishery subject to spatial closures. +2004 Drouineau, H., S. Mahévas, D. Pelletier, & B. Beliaeff, 2004. Assessing the impact of marine protected areas on the hake-nephrops fishery of the Bay of Biscay using ISIS-Fish. ICES CM 2004/Y:09. +2004 D. Pelletier & S. Mahévas, 2004. Evaluating the dynamics of mixed fisheries in response to policy options: Match and mismatch between data resolution, model requirements and model objectives. 4th World Fisheries Congress, May 2-6, Vancouver, Canada. +2002 D. Pelletier & S. Mahévas, 2002. Modélisation de la dynamique de pêcherie complexe Intégration des informations pour la pêcherie du Plateau Celtique. Colloque du Défi Golfe de Gascogne, Brest, 11-13 décembre. +2001 Mahévas S., D. Pelletier, 2001. Impact de zones marines protégées sur la dynamique d'une pêcherie complexe. Actes du Cinquième Forum Halieumétrique, Lorient, 26-28 juin 2001, p. 215. +2001 D. Pelletier & S. Mahévas, 2001. Comparing the impact of Total Allowable Catches and Marine Protected Areas upon the dynamics of a mixed fishery. Conférence Scientifique Annuelle du CIEM, Oslo, ICES CM 2001/N:13, 11 p. +2000 D. Pelletier, S. Mahévas et B. Poussin 2000. Un outil de simulation pour explorer l'impact de mesures de gestion sur la dynamique d'une pêcherie complexe. Réunion annuelle de l'ART4/PNEC, Paris, 14-15 décembre. +2000 B. Poussin, S. Mahévas, et D. Pelletier, 2000. Utilisation d'un générateur d'infrastructure EJB pour le développement d'un simulateur de pêcherie complexe et multi-spécifique. Colloque Objets, Composants et Modèles 2000, 18 mai 2000, Nantes. +===== ========================================================================================================================================================================================================================================================================= ================================================================================= + +Reports +------- + +===== ============================================================================================================================================================================================================================================================================================================================================================================================================ ============== +Year Publication Download +===== ============================================================================================================================================================================================================================================================================================================================================================================================================ ============== +2011 Preuss B., 2011. Paramétrage du modèle de dynamique de la pêcherie professionnelle dans le lagonSud-ouest de la Nouvelle-Calédonie. Rapport ZoNéCo. +2011 Preuss B., 2011. Paramétrage du modèle de dynamique de la pêcherie plaisancière dans le lagon Sud-ouest de la Nouvelle-Calédonie. Rapport ZoNéCo. +2011 Preuss B., 2011. Elaboration et propositions de scénarios de gestion de pêche pour le lagon Sudouest de la Nouvelle-Calédonie. Rapport ZoNéCo. +2010 Mahévas S., Lehuta S., Pawlowski L., Masse J., Delaunay D., Vermard Y., Forest A., Marchal P., 2010. Impact de scenarios de gestion spatialisée sur les pêcheries impliquant des flottilles françaises avec ISIS-Fish : évaluer et communiquer. Rapport PPDR Convention DPMA-Ifremer 2010. 42p. +2009 Lehuta, S. and Pawlowski, L., 2009. Overview of the ISIS-Fish fishery simulator applied to the management of the Bay of Biscay anchovy. Report of the Benchmark Workshop on Short-lived Species (WKSHORT), 31 August–4 September 2009, Bergen, Norway. ICES CM 2009/ACOM:34. 166 pp. +2009 Mahévas, S. 2009. Simulation de la dynamique de pêcherie : modélisation, complexité et incertitude. Mémoire d'Habilitation à diriger les recherches, Université de Rennes 1. 52p +2003 Pelletier, D. 2003. Dynamique spatiale et saisonnière de pêcheries démersales et benthiques : Caractérisation, modélisation, et conséquences pour la gestion par Zones Marines Protégées. Mémoire d'Habilitation à diriger les recherches, Université de Montpellier II. 281 p. +2001 Mahévas, S., & D. Pelletier. 2001. Un outil de simulation pour explorer l'impact de mesures de gestion sur la dynamique d'une pêcherie complexe. Ecole de printemps COREV,Hyères, mai 2001. +2000 Pelletier, D., S. Mahévas, 2000. Selecting appropriate mathematical and computer tools for developing integrated models : the example of the dynamics of a mixed fishery, Groupe de travail «Integrated modelling and assessment» et «Complex, adaptive, hierarchical systems», Ecosummit 2000, Integrating the Sciences (International Society for Ecological Modelling), 18-22 juin 2000, Halifax, Canada. +===== ============================================================================================================================================================================================================================================================================================================================================================================================================ ============== + +Symposiums communications +------------------------- + +===== ================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============== +Year Publication Download +===== ================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============== +2011 Mahévas S. Comment aider au choix d’une Aire Marine protégée avec une représentation fausse de l’écosystème ? Colloque scientifique de l’Agence des Aires Marines Protégées. 22-24 Novembre. Paris. +2011 Gasche L., Mahévas S., Marchal, P. Development of a robust Marine Protected Area impact diagnosis in a context of uncertainty and global change. Vulnerability of coastal ecosystems to global change and extreme events Symposium. Biarritz, 18 to 21 October. +2010 Mahévas S. Quantitative diagnostics of the impact of management measures on fisheries using ISIS-Fish. MARIFISH Marifish, Barcelona, November 15-19. +2010 Mahévas S., Monod H., Lehuta S., Faivre R. et Makowski D. A statistical framework supporting decision making in fisheries management within uncertainty context in biological and fleet behaviour knowledge. ICES Annual Science Conference 2010. Nantes. September. +2010 Preuss B. et al., Recreational fishing: a key issue for resources management in the Southwest lagoon of New-Caledonia. ICES Annual Science Conference 2010. +2010 Preuss B. et al., Assessing Marine Protected Areas network and alternative management scenarios for the sustainable exploitation of fish resources in the Southwest lagoon of New-Caledonia. ICES Annual Science Conference 2010. +2010 Sigrid Lehuta, Stéphanie Mahévas, Pascal Le Floc’h, Dominique Pelletier, Youen Vermard, Paul Marchal, Etienne Rivot. Fishery-based indicators of management impact: assessing relevance and robustness using a bio-economic simulation model. IIFET 2010 Montpellier, 13-16 July 2010. +2010 Hussein C., Lenfant, P., Pastor J., Ibrahim A., Saragoni G., Pelletier D., Mahévas S., Verdoit- Jarraya M. Assessing the impact of artisanal and recreational fishing and protection in the North-western Mediterranean Sea using a simulation model. 39th CIESM Congress, Venice, 10-14 May 2010. +2009 Hussein C., Lenfant, P., Pastor J., Ibrahim A., Saragoni G., Pelletier D., Mahévas S., Verdoit- Jarraya M. Assessing the impact of artisanal and recreational fishing and protection in the North-western Mediterranean Sea using a simulation model. 4th European Conference on Coastal Lagoon Research. Research and Management for the Conservation of Coastal Lagoon Ecosystems, South - North comparisons, Montpellier, 14-18 December 2009. +2009 Mahévas, S. Lehuta, S., Couteau J., Monod H. How global sensitivity analyses can support fisheries management? Atelier Franco-australien. Décembre, Brest. +2009 Mahévas, S. Quantitative diagnostics of the impact of management measures on fisheries using ISIS-Fish. Rencontre pour la collaboration franco-canadienne. Décembre, Rimousski, Canada. +2009 Preuss B. et al., 2009. Evaluating zoning scenarios for sustainable exploitation of SW Caledonian lagoon fish resources. Pacific Science Intercongress 2009. +2009 Preuss B. Evaluation de différents scénarios de zonage d’Aires Marines Protégées pour une exploitation durable des ressources halieutiques du Lagon Sud-ouest de Nouvelle-Calédonie. Doctoriales du Pacifique 2009. +2009 Sigrid Lehuta, Stéphanie Mahévas, Pierre Petitgas, Pascal Le Floc’h, Dominique Pelletier, Paul Marchal, Etienne Rivot. Fishery-based indicators of management impact : assessing relevance and robustness using a bio-economic simulation model. ICES CM 2009/O:30. +2009 Sigrid Lehuta, Stéphanie Mahévas, Pierre Petitgas, Youen Vermard, Martin Huret, Pascal Le Floc’h. Modelling the spatial dynamics of the Anchovy fishery in the Bay of Biscay with the simulation model ISIS-Fish : integration of information, calibration and validation. Poster at the ICES/PICES/UNCOVER Symposium 3-6 November 2009. +2008 Vermard, Y., Lehuta, S., Mahévas, S., Thébaud, O., Marchal, P., and Gascuel, D. Integrating Random Utility Model fit in ISIS-Fish to simulate the dynamics of the Anchovy fishery of the Bay of Biscay. ICES Annual Conference, Halifax, NS, Canada. 22-26 September. +2008 Mahévas, S., Lehuta, S., Monod, H., Vermard, Y. Running simulation designs to assess the sensitivity of management measures to fishermen reactions. ICES annual science conference Ices-CM 2008/O:10, Halifax, Canada. 22-26 September. +2008 Vermard, Y., Lehuta, S., Mahévas, S., Thebaud, O., Marchal, P., Gascuel, D. Including dynamic fishermen behaviour in a fisheries simulation model to assess the impact of environmental changes. Coping with global change in marine social-ecological systems. FAO, Rome, Italy, July 2008. +2008 Mahévas, S., Lehuta, S., Monod, H. & Vermard, Y. A simulation designs approach to assess the robustness of alternative management measures to fishermen behaviour : an application to the bay of Biscay anchovy fishery. Colloque de restitution Sidepech-Demostem. Boulogne. Novembre. +2007 Mahévas, S. Analyse de sensibilité et plan d’expérience pour proposer un diagnostic d’impact d’Aires Marines Protégées avec ISIS-Fish. Conférence invitée aux Journées de la modélisation du CEMAGREF, Clermont-Ferrand, 27-28 Novembre. +2007 Mahévas, S., Pelletier, D. Elaborating reliable quantitative diagnostics of the impact of Marine Protected Areas on fisheries using ISIS-Fish. European Symposium on Marine Protected Areas as a Tool for Fisheries Management and Ecosystem Conservation, Murcia, 25-28th September. +2007 Lehuta, S., Mahévas, S., Petitgas, P., Pelletier, D. Investigating the impact of MPA on the Bay of Biscay Anchovy fishery. European Symposium on Marine Protected Areas as a Tool for Fisheries Management and Ecosystem Conservation, Murcia, 25-28th September. +2007 Kraus, G., Pelletier, D., Dubreuil, J., Vermard, Y., Mahévas, S. European Symposium on Marine Protected Areas as a Tool for Fisheries Management and Ecosystem Conservation, Murcia, 25-28th September. +2007 Pascal, N., Maynou, F., Pelletier, D., Mahévas, S., Ferraris, J. A bioeconomic approach to assess the design and impacts of small size marine protected areas using the ISIS-Fish model: the case of Solea vulgaris and Lithognathus mormyrus artisanal fisheries in Garraf (Spain, NW Mediterranean). European Symposium on Marine Protected Areas as a Tool for Fisheries Management and Ecosystem Conservation, Murcia, 25-28th September. +2006 Lehuta S., Petitgas P., Mahévas S. Assessing the potential effect of management scenarios for Anchovy (Engraulis encrasicolus) fishery of the Bay of Biscay using ISIS-Fish simulation tool. ICES CM 2006/R:10. +2006 Jarraya, M., Pelletier, D., Drouineau, H., Mahévas, S., Capoulade, M., Kolusniewski, J.S. Evaluating the impact of artisanal and recreative fishing upon the dynamics of a sea bream population (Diplodus sargus) around the Banyuls reserve (Mediterranean). International Conference on Coastal Ecosystems, Towards an Integrated Knowledge for an Ecosystem Approach for Fisheries, Campeche, 26-29th June. +2005 Pelletier, D., S. Mahévas, M. jarraya, M. Capoulade, H. Drouineau, Y. Vermard, and F. Bastardie. Investigating the consequences of Marine Protected Areas upon fish populations and fisheries through ISIS-Fish, a generic simulation tool, pp. 340-341, In: Day, J.C., J. Senior, S. Monk, and W. Neal (eds). First International Marine Protected Areas Congress, 23-27 October 2005, conference proceedings: IMPAC1 2005, Geelong . +===== ================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============== + +Thesis +------ + +========= ========================== =========================================================================================== ================================================================================================================================================================================================= ============================================================= +Period Student School Title Download +========= ========================== =========================================================================================== ================================================================================================================================================================================================= ============================================================= +2011 Hussein Chirine École Pratique des Hautes Études, Mention Systèmes Intégrés, Environnement et Biodiversité. Modélisation de l’impact de la pêche et de la protection sur une ressource exploitée : le sar commun, Diplodus sargus sargus (L., 1758) autour de la réserve naturelle marine de Cerbère-Banyuls. +2007-2010 Lehuta Sigrid « Vie, Agro, Santé » (VAS) Développement d’indicateurs de pêcheries pour évaluer l’impact de mesures de gestion. `Here <http://archimer.ifremer.fr/doc/00025/13630/10712.pdf>`_ +2006-2009 Vermard Youen « Vie, Agro, Santé » (VAS) La compréhension des dynamiques de flottille permet-elle d'améliorer les scénarios de gestion ? `Here <http://archimer.ifremer.fr/doc/00001/11256/7799.pdf>`_ +2004-2007 Drouineau Hilaire « Vie, Agro, Santé » (VAS) Le développement d’un modèle de dynamique de population structuré en longueur et spatialisé – application au Merlu (Merluccius merluccius) d’Atlantique Nord-Est. `Here <http://archimer.ifremer.fr/doc/2008/these-3710.pdf>`_ +========= ========================== =========================================================================================== ================================================================================================================================================================================================= ============================================================= + +Post-doctorates +--------------- + +========= ==================== ================================================================================================================================================================================================= ============== +Period Student Title Download +========= ==================== ================================================================================================================================================================================================= ============== +2005-2007 Bastardie François Développement d’ISIS-Fish en utilisant la librairie FLR (Fisheries Library in R) du logiciel R. +========= ==================== ================================================================================================================================================================================================= ============== + +Internship reports +------------------ + +===== ======================================================================= ================================================================================= ============================================================================================================================================================================================== ============== +Year Student Diploma Title Download +===== ======================================================================= ================================================================================= ============================================================================================================================================================================================== ============== +2011 DE LA VEGA C. Master 2 Oceanographie Environnement Marin - Université Paris VI. Evaluation de stratégies de gestion (Sélectivité de chaluts et Aires Marines Protégées) au sein de la plate-forme ISIS-Fish : application au stock de merlu nord dans le golfe de Gascogne. +2010 DESPORTE N. Master 2 de mathématiques - Université de Franche-Comté Développement de méthodologies statistiques pour l’affectation d’un métier de pêche. +2010 ARCHAMBAULT B. Master 2 Sciences halieutiques et aquacoles - Agrocampus Ouest Evaluation par le modèle ISIS-Fish de mesures de protection dans le sud du golfe dy Saint-Laurent. +2009 SOUCHET A. Master 2 - Université de Nantes Prise en compte des interactions spatio-temporelles de l'effort de pêche dans la construction des zones et saisons de pêches. +2007 LEHUTA S. Master 2 - AgroParisTech Evaluation de l’efficacité d’aires marines protégées pour restaurer la population d’anchois (Engraulis encrasicolus) du golfe de Gascogne à l’aide d’un modèle spatialisé. +2006 CAVE M. Master Sciences halieutiques et aquacoles - Agrocampus Rennes Validation d’un modèle bioéconomique de la pêcherie de langoustine du Golfe de Gascogne +2006 FARGIER L. Master 2 Modélisation de la pêcherie de sar dans la réserve de Bonafacio +2006 LEHUTA S. Master 1 Simuler la dynamique de la pêcherie pélagique anchois du Golfe de Gascogne +2006 SAVE V. Master 2 Evaluation de scénarios de restauration de la langouste en mer d'Iroise +2005 CAPOULADE M. Master de l'Université de Perpignan Modélisation de la dynamique de la population de sar commun (Diplodus sargus) autour de la réserve de Banyuls +2005 PREUSS B. Master de l'Ecole Normale Supérieure de Paris Analyse de scénarios de gestion pour la pêcherie démerso-benthique du Plateau Celtique +2004 DROUINEAU H. DAA de l'Ecole Nationale Supérieure Agronomique de Rennes, spécialité halieutique Évaluation de l'impact de différentes réglementations sur la pêcherie mixte merlu-langoustine de la Grande Vasière, à l'aide du simulateur ISIS-Fish +2003 VOISIN P. DEA de Sciences de l'Environnement Marin, Université de Marseille Etude des conséquences de l'allocation spatiale de l'effort de pêche sur la qualité des indices d'abondance issus des captures commerciales - Le cas de la pêcherie chalutière de mer Celtique +2000 BALABAN A., BOUWYN P., LACROIX L., MARCHAND R., MAURANGE L., VINCENT G. Projet de DESS de Génie Informatique de l'Univ. de Nantes Contribution à l'analyse informatique des règles de gestion dans le simulateur de pêcherie complexe +2000 QUILLON M. Stage de DESS « Compétence complémentaire en Informatique » (Univ. Grenoble) Développement des interfaces et étude de l'ergonomie du logiciel de simulation de pêcherie complexe +1999 CERISIER F., LETETREL V., MEAT G., SAKHO M. Projet de DESS de Génie Informatique de l'Univ. de Nantes Contribution à l'analyse informatique des entités d'un modèle de pêcherie complexe. +1999 MEAT G. Stage de DESS de Génie Informatique de l'Univ. de Nantes Contribution au développement des interfaces homme-machine d'un simulateur de pêcherie complexe +1999 POUSSIN B. Stage de DESS de Génie Informatique de l'Univ. de Nantes Développement d'un prototype de simulateur de pêcherie complexe. (Poussin et al. 2000; Pelletier et al. 2001) +===== ======================================================================= ================================================================================= ============================================================================================================================================================================================== ============== + +Others +------ + +===== =============================================================================================================================================================================================================================================================================== ============== +Year Publication Download +===== =============================================================================================================================================================================================================================================================================== ============== +2003 Pelletier, D. 2003. Dynamique spatiale et saisonnière de pêcheries démersales et benthiques : Caractérisation, modélisation, et conséquences pour la gestion par Zones Marines Protégées. Mémoire d'Habilitation à diriger les recherches, Université de Montpellier II. 281 p. +===== =============================================================================================================================================================================================================================================================================== ============== Added: trunk/src/site/en/rst/research.rst =================================================================== --- trunk/src/site/en/rst/research.rst (rev 0) +++ trunk/src/site/en/rst/research.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -0,0 +1,38 @@ +.. - +.. * #%L +.. * IsisFish +.. * +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 2 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * #L% +.. - + +Research projects related to ISIS-Fish +====================================== + +===================== ============================================================================================================================== ============================================ ====================================================================================== =========== ========= +Name Project Role in project Financing Begin year End year +===================== ============================================================================================================================== ============================================ ====================================================================================== =========== ========= +UNCOVER Evaluer l'impact de changements biologiques pour mettre en place des plans de restauration partenaire EU - VIth PCRD- FP6-2004-SSP-4 (Priority 8.1.B.1.3 Task 2) 2006 2008 +EFIMAS Operational evaluation tools for fisheries management options partenaire EU FP6 n° SSP8-CT-2003-502516 2004 2007 +PROTECT Potential of marine protected areas for marine environmental PROTECTion coordination d'une tâche sur la modélisation EU FP6 n° SSP8-CT-2004-513670 2004 2007 +Liteau-AMP Développement d'outils diagnostics et exploratoires d'aide à la décision pour évaluer la performance d'Aires Marines Protégées dirigeant Lit'eau 2 (MEDD) 2004 2006 +ISIS-Fish development Développement d'un outil de simulation de pêcherie complexe avec l'Université de Nantes, COGITEC et Code Lutin responsable de projet IFREMER n° 99/210448, 99/210500, 01/210676, 02/210898, 03/210136, 04/210316, PNEC/ART4 1998 2006 +TECTAC TEChnological developments and TACtical adaptations of important EU fleets partenaire European Union n°Q5RS-2002-01291 2002 2005 +===================== ============================================================================================================================== ============================================ ====================================================================================== =========== ========= Modified: trunk/src/site/rst/contact.rst =================================================================== --- trunk/src/site/rst/contact.rst 2012-08-22 14:17:44 UTC (rev 89) +++ trunk/src/site/rst/contact.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -1,7 +1,7 @@ .. - .. * #%L .. * IsisFish -.. * +.. * .. * $Id$ .. * $HeadURL$ .. * %% @@ -9,15 +9,15 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 2 of the .. * License, or (at your option) any later version. -.. * +.. * .. * This program is distributed in the hope that it will be useful, .. * but WITHOUT ANY WARRANTY; without even the implied warranty of .. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the .. * GNU General Public License for more details. -.. * -.. * You should have received a copy of the GNU General Public +.. * +.. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see .. * <http://www.gnu.org/licenses/gpl-2.0.html>. .. * #L% Modified: trunk/src/site/rst/index.rst =================================================================== --- trunk/src/site/rst/index.rst 2012-08-22 14:17:44 UTC (rev 89) +++ trunk/src/site/rst/index.rst 2012-08-22 15:47:58 UTC (rev 90) @@ -53,6 +53,6 @@ celui-ci. L'analyse et la réalisation technique ont été confiées à différents partenaires: -- Irin (Institut de Recherche en Informatique de Nantes) +- IRIN (Institut de Recherche en Informatique de Nantes) - Cogitec (http://www.cogitec.fr) - Code Lutin (http://www.codelutin.com) Modified: trunk/src/site/site_en.xml =================================================================== --- trunk/src/site/site_en.xml 2012-08-22 14:17:44 UTC (rev 89) +++ trunk/src/site/site_en.xml 2012-08-22 15:47:58 UTC (rev 90) @@ -26,63 +26,44 @@ <project name="Isis-fish"> - <bannerLeft> - <src>images/isislogo.png</src> - <href>http://www.isis-fish.org</href> - </bannerLeft> + +<publishDate position="none"/> +<version position="none"/> - <bannerRight> - <src>images/ifremer.png</src> - </bannerRight> +<bannerLeft> + <src>images/isislogo.png</src> + <href>http://www.isis-fish.org</href> +</bannerLeft> - <body> +<bannerRight> + <src>images/ifremer.png</src> +</bannerRight> + +<poweredBy> + <logo href="http://argouml.tigris.org/" img="/images/argouml-logo.png" name="ArgoUML"/> + <logo href="http://docutils.sourceforge.net/rst.html" img="/images/restructuredtext-logo.png" name="reStructuredText"/> + <logo href="http://topia.labs.libre-entreprise.org/" img="/images/topia-logo.png" name="ToPIA"/> +</poweredBy> + +<body> <links> - <item name="Scientiste site" href="http://www.ifremer.fr/isis-fish/index.html"/> - <item name="Ifremer" href="http://www.ifremer.fr/"/> - <item name="[fr" href="http://isis-fish.labs.libre-entreprise.org/index.html"/> - <item name="en]" href="http://isis-fish.labs.libre-entreprise.org/en/index.html"/> + <item name="Ifremer" href="http://www.ifremer.fr/"/> +  + <item name="[fr" href="http://www.isis-fish.org/index.html"/> + <item name="en]" href="http://www.isis-fish.org/en/index.html"/> </links> - <menu name="Overview"> - <item href="/index.html" name="about"></item> - <item href="/wiki/en:start" name="Wiki"></item> - <item href="/jnlp/isis-fish-v3.jnlp" name="Launch Isis-fish v3"></item> + <menu name="ISIS-Fish"> + <item name="Presentation" href="index.html"/> + <item name="Roadmap" href="http://forge.codelutin.com/projects/isis-fish/roadmap"/> + <item name="Download" href="download.html"/> + <item name="Publications" href="publications.html"/> + <item name="Research projects" href="research.html"/> + <item name="License" href="license.html"/> + <item name="Contact/Assistance" href="contact.html"/> </menu> - - <menu name="Version 1"> - <item href="http://www.isis-fish.org/api/isis-fish/version1/index.html" name="Simulator API"></item> - <item href="http://www.isis-fish.org/download/version1" name="Download"></item> - </menu> - - <menu name="Version 2"> - <item href="http://www.isis-fish.org/api/isis-fish/version2/index.html" name="Simulateur API"></item> - <item href="http://www.isis-fish.org/api/isis-fish/version2/xref/index.html" name="Simulateur source reference"></item> - <item href="http://www.isis-fish.org/download/version2" name="Download"></item> - </menu> - - <menu name="Version 3"> - <item href="http://www.isis-fish.org/devel/IsisFishModel.png" name="UML Model"></item> - <item href="/apidocs/index.html" name="Simulateur API"></item> - <item href="http://www.isis-fish.org/download/version3" name="Download"></item> - </menu> - - <menu name="Development documentations"> -  - <item href="http://maven-site.nuiton.org/nuiton-matrix/apidocs/index.html" name="Matrix API"></item> - </menu> - - <menu name="Trackers"> - <item href="http://labs.libre-entreprise.org/tracker/?atid=113&group_id=8&func=…" name="Bug Tracking System"></item> - <item href="http://labs.libre-entreprise.org/tracker/?atid=116&group_id=8&func=…" name="Feature Requests"></item> - <item href="http://labs.libre-entreprise.org/tracker/?atid=114&group_id=8&func=…" name="Support requests"></item> - <item href="http://labs.libre-entreprise.org/tracker/?atid=115&group_id=8&func=…" name="Patch Tracking System"></item> - </menu> - - <menu name="Liens"> - <item href="http://www.oracle.com/technetwork/java/javase/downloads" name="Oracle Java site"></item> - </menu> ${reports} - </body> +</body> </project> Modified: trunk/src/site/site_fr.xml =================================================================== --- trunk/src/site/site_fr.xml 2012-08-22 14:17:44 UTC (rev 89) +++ trunk/src/site/site_fr.xml 2012-08-22 15:47:58 UTC (rev 90) @@ -49,8 +49,8 @@ <links> <item name="Ifremer" href="http://www.ifremer.fr/"/>  -  + <item name="[fr" href="http://www.isis-fish.org/index.html"/> + <item name="en]" href="http://www.isis-fish.org/en/index.html"/> </links> <menu name="ISIS-Fish">

1 0

r89 - trunk/src/site/rst
by smahevas＠users.forge.codelutin.com 22 Aug '12

22 Aug '12

Author: smahevas Date: 2012-08-22 16:17:44 +0200 (Wed, 22 Aug 2012) New Revision: 89 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/89 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/news.rst Modified: trunk/src/site/rst/news.rst =================================================================== --- trunk/src/site/rst/news.rst 2012-08-20 10:00:19 UTC (rev 88) +++ trunk/src/site/rst/news.rst 2012-08-22 14:17:44 UTC (rev 89) @@ -31,7 +31,7 @@ 2012 ---- -- *6-7 décembre 2012* : Séminaire Utilisateurs ISIS-Fish - Nantes, FRANCE, INSCRIPTION_ +- ***6-7 décembre 2012* : Séminaire Utilisateurs ISIS-Fish - Nantes, FRANCE, INSCRIPTION_** - *17-21 septembre 212* : `Conference annuelle du CIEM - Bergen`_ , Norvège - *4-8 juin 2012* : `Ecole Chercheur 2012`_ Analyse de sensibilité, Atelier ISIS-Fish (Lyon) - *23-26 avril 2012* : Participation à la réunion de démarrage du projet européen MYFISH_ , Vigo ESPAGNE

1 0

r88 - trunk/src/site/rst
by bpoussin＠users.forge.codelutin.com 20 Aug '12

20 Aug '12

Author: bpoussin Date: 2012-08-20 12:00:19 +0200 (Mon, 20 Aug 2012) New Revision: 88 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/88 Log: >From scmwebeditor -- correction du lien `Ecole chercheur 2012` Modified: trunk/src/site/rst/news.rst Modified: trunk/src/site/rst/news.rst =================================================================== --- trunk/src/site/rst/news.rst 2012-08-20 07:33:47 UTC (rev 87) +++ trunk/src/site/rst/news.rst 2012-08-20 10:00:19 UTC (rev 88) @@ -32,8 +32,8 @@ ---- - *6-7 décembre 2012* : Séminaire Utilisateurs ISIS-Fish - Nantes, FRANCE, INSCRIPTION_ -- *17-21 septembre 2012* : `Conference annuelle du CIEM - Bergen`_ , Norvège -- *4-8 juin 2012* : 'Ecole Chercheur 2012'_ Analyse de sensibilité, Atelier ISIS-Fish (Lyon) +- *17-21 septembre 212* : `Conference annuelle du CIEM - Bergen`_ , Norvège +- *4-8 juin 2012* : `Ecole Chercheur 2012`_ Analyse de sensibilité, Atelier ISIS-Fish (Lyon) - *23-26 avril 2012* : Participation à la réunion de démarrage du projet européen MYFISH_ , Vigo ESPAGNE - *19-20 janvier 2012* : Participation à la réunion Mexico_

1 0

r87 - trunk/src/site/rst
by smahevas＠users.forge.codelutin.com 20 Aug '12

20 Aug '12

Author: smahevas Date: 2012-08-20 09:33:47 +0200 (Mon, 20 Aug 2012) New Revision: 87 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/87 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/news.rst Modified: trunk/src/site/rst/news.rst =================================================================== --- trunk/src/site/rst/news.rst 2012-08-08 14:59:04 UTC (rev 86) +++ trunk/src/site/rst/news.rst 2012-08-20 07:33:47 UTC (rev 87) @@ -31,6 +31,10 @@ 2012 ---- +- *6-7 décembre 2012* : Séminaire Utilisateurs ISIS-Fish - Nantes, FRANCE, INSCRIPTION_ +- *17-21 septembre 2012* : `Conference annuelle du CIEM - Bergen`_ , Norvège +- *4-8 juin 2012* : 'Ecole Chercheur 2012'_ Analyse de sensibilité, Atelier ISIS-Fish (Lyon) +- *23-26 avril 2012* : Participation à la réunion de démarrage du projet européen MYFISH_ , Vigo ESPAGNE - *19-20 janvier 2012* : Participation à la réunion Mexico_ 2011 @@ -68,6 +72,10 @@ - *5 et 6 juin 2008* : réunion Mexico_ à Nantes, FRANCE .. _RMLL: http://rmll.info +.. _INSCRIPTION: http://poll-o.isis-fish.org/reunion-6-et-7-decembre-2012/ +.. _MYFISH: http://ec.europa.eu/research/bioeconomy/agriculture/projects/myfish_en.htm +.. _Conference annuelle du CIEM - Bergen: http://www.ices.dk/asc2012/ +.. _Ecole chercheur 2012: http://reseau-mexico.fr/ecoleChercheursMexico2012 .. _Conference annuelle du CIEM - Nantes: http://www.ices.dk/iceswork/asc/2010/index.asp .. _Ecole chercheur: http://www.reseau-mexico.fr/node/165 .. _Conference annuelle du CIEM - Berlin: http://www.ices.dk/iceswork/asc/2009/index.asp

1 0

r86 - trunk/src/site/rst/v4/user
by echatellier＠users.forge.codelutin.com 08 Aug '12

08 Aug '12

Author: echatellier Date: 2012-08-08 16:59:04 +0200 (Wed, 08 Aug 2012) New Revision: 86 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/86 Log: >From scmwebeditor -- Correction des urls Modified: trunk/src/site/rst/v4/user/API.rst Modified: trunk/src/site/rst/v4/user/API.rst =================================================================== --- trunk/src/site/rst/v4/user/API.rst 2012-07-16 07:49:43 UTC (rev 85) +++ trunk/src/site/rst/v4/user/API.rst 2012-08-08 14:59:04 UTC (rev 86) @@ -5,7 +5,7 @@ .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2011 Ifremer, Code Lutin, Chatellier Eric +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as @@ -43,7 +43,7 @@ .. _src: ../../xref/index.html .. _Javadoc JAVA: http://java.sun.com/javase/6/docs/api/ .. _Javadoc ToPIA: http://maven-site.nuiton.org/topia/topia-persistence/apidocs/index.html -.. _Javadoc Nuiton-Matrix: http://maven-site.nuiton.org/nuiton-matrix/apidocs/index.html -.. _MatrixND: http://maven-site.nuiton.org/nuiton-matrix/apidocs/org/nuiton/math/matrix/M… +.. _Javadoc Nuiton-Matrix: http://maven-site.nuiton.org/nuiton-matrix/nuiton-matrix/apidocs/index.html +.. _MatrixND: http://maven-site.nuiton.org/nuiton-matrix/nuiton-matrix/apidocs/org/nuiton… .. _Javadoc Nuiton-Utils: http://maven-site.nuiton.org/nuiton-utils/nuiton-utils/apidocs/index.html .. _Javadoc Nuiton-j2r: http://maven-site.nuiton.org/nuiton-j2r/apidocs/index.html \ No newline at end of file

1 0

r85 - trunk
by echatellier＠users.forge.codelutin.com 16 Jul '12

16 Jul '12

Author: echatellier Date: 2012-07-16 09:49:43 +0200 (Mon, 16 Jul 2012) New Revision: 85 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/85 Log: Fix en site generation Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2012-05-29 17:01:28 UTC (rev 84) +++ trunk/pom.xml 2012-07-16 07:49:43 UTC (rev 85) @@ -132,7 +132,6 @@  <projectId>isis-fish-docs</projectId> <platform>forge.codelutin.com</platform> - <siteLocales>fr,en</siteLocales> <maven.jar.main.class>fr.ifremer.isisfish.IsisFish</maven.jar.main.class> <license.licenseName>gpl_v2</license.licenseName> </properties> @@ -156,6 +155,9 @@ <version>${jrstPluginVersion}</version> </dependency> </dependencies> + <configuration> + <locales>fr,en</locales> + </configuration> </plugin> </plugins> </pluginManagement>

1 0

r84 - in trunk/src/site/rst: . history v2/user v3 v3/devel v3/user v4 v4/devel v4/user v4/user/tutorials
by echatellier＠users.forge.codelutin.com 29 May '12

29 May '12

Author: echatellier Date: 2012-05-29 19:01:28 +0200 (Tue, 29 May 2012) New Revision: 84 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/84 Log: Fix rst synthax Modified: trunk/src/site/rst/contact.rst trunk/src/site/rst/download.rst trunk/src/site/rst/history.rst trunk/src/site/rst/history/changelog.rst trunk/src/site/rst/v2/user/ScriptHilaire.rst trunk/src/site/rst/v3/devel/SyntaxeOption.rst trunk/src/site/rst/v3/index.rst trunk/src/site/rst/v3/user/inputs.rst trunk/src/site/rst/v3/user/isisFishData.rst trunk/src/site/rst/v4/devel/index.rst trunk/src/site/rst/v4/index.rst trunk/src/site/rst/v4/user/FAQ.rst trunk/src/site/rst/v4/user/installation.rst trunk/src/site/rst/v4/user/scripts.rst trunk/src/site/rst/v4/user/scriptsR.rst trunk/src/site/rst/v4/user/tutorials/firstLaunch.rst trunk/src/site/rst/v4/user/tutorials/parameterising.rst trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst trunk/src/site/rst/v4/user/tutorials/useAPI.rst trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst Modified: trunk/src/site/rst/contact.rst =================================================================== --- trunk/src/site/rst/contact.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/contact.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -51,7 +51,7 @@ `Statistiques d utilisation des listes`_ -.. _Statistiques d utilisation des listes:: listStats.html +.. _Statistiques d utilisation des listes: listStats.html Les listes pour les utilisateurs ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -96,7 +96,7 @@ .. _créer un compte: http://forge.codelutin.com/account/register .. _Report de bugs: http://forge.codelutin.com/projects/isis-fish/issues?set_filter=1&tracker_i… -.. _Demande d'amélioration :http://forge.codelutin.com/projects/isis-fish/issues?set_filter=1&tracker_id=2 +.. _Demande d'amélioration: http://forge.codelutin.com/projects/isis-fish/issues?set_filter=1&tracker_i… .. _Roadmap: http://forge.codelutin.com/projects/isis-fish/roadmap .. _isis-fish-devel(a)list.isis-fish.org: http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-devel .. _isis-fish-bugreport(a)list.isis-fish.org: http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-bugreport Modified: trunk/src/site/rst/download.rst =================================================================== --- trunk/src/site/rst/download.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/download.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -70,4 +70,4 @@ `Site du projet`_ -.. _Site du projet::http://flr-project.org/doku.php?id=applications:isisflr +.. _Site du projet: http://flr-project.org/doku.php?id=applications:isisflr Modified: trunk/src/site/rst/history/changelog.rst =================================================================== --- trunk/src/site/rst/history/changelog.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/history/changelog.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -31,5 +31,5 @@ Depuis la version 4, la liste des changements passé et à venir sont directement générés depuis la `forge`_. -.. _cette page:../v3/changelog.html -.. _forge:http://forge.codelutin.com/projects/isis-fish/roadmap?completed=1 +.. _cette page: ../v3/changelog.html +.. _forge: http://forge.codelutin.com/projects/isis-fish/roadmap?completed=1 Modified: trunk/src/site/rst/history.rst =================================================================== --- trunk/src/site/rst/history.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/history.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -40,8 +40,9 @@ * `Version 2`_ * `Version 3`_ - .. _historique::history/history.html - .. _journal des modifications::history/changelog.html - .. _Version 1::v1/changelog.html - .. _Version 2::v2/index.html - .. _Version 3::v3/index.html \ No newline at end of file + .. _historique: history/history.html + .. _journal des modifications: history/changelog.html + .. _Version 1: v1/changelog.html + .. _Version 2: v2/index.html + .. _Version 3: v3/index.html + \ No newline at end of file Modified: trunk/src/site/rst/v2/user/ScriptHilaire.rst =================================================================== --- trunk/src/site/rst/v2/user/ScriptHilaire.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v2/user/ScriptHilaire.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -107,7 +107,6 @@ Opérations mathématiques et concaténations ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - Les opérations mathématiques classiques telles que +, -, *, / sont définies sur les variables numériques, ainsi que l'opérateur % qui donne le reste de la division euclidienne Modified: trunk/src/site/rst/v3/devel/SyntaxeOption.rst =================================================================== --- trunk/src/site/rst/v3/devel/SyntaxeOption.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v3/devel/SyntaxeOption.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -210,7 +210,7 @@ --export|-o 'export dans un nouveau fichier (fileZip) des formules d'un certain type de forumle (formule=xxx) avec possibilité d'effectuer un filtre (name) ou - pas (*)' +pas (*)' # --vcs '<update|commit|state> [file:file+]' Modified: trunk/src/site/rst/v3/index.rst =================================================================== --- trunk/src/site/rst/v3/index.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v3/index.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -45,7 +45,7 @@ Cette version n'est plus disponible en téléchargement. -.. _FAQ:user/FAQ.html -.. _Documentation utilisateur:user/index.html -.. _Documentation développeur:devel/index.rst -.. _Note pour le passage de la version 3.1.3 a la version 3.2.0: documentation/changeVersion.html \ No newline at end of file +.. _FAQ: user/FAQ.html +.. _Documentation utilisateur: user/index.html +.. _Documentation développeur: devel/index.rst +.. _Note pour le passage de la version 3.1.3 a la version 3.2.0: documentation/changeVersion.html Modified: trunk/src/site/rst/v3/user/inputs.rst =================================================================== --- trunk/src/site/rst/v3/user/inputs.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v3/user/inputs.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -1361,7 +1361,7 @@ récupérable. #. **continuer** vers les types de navires Une fois terminées les modifications sur les types de trajets de la pêcherie, - on passe à l'étape suivante de la configuration : les types de navires. + on passe à l'étape suivante de la configuration : les types de navires. 10. **saisie des types de navires** =================================== @@ -1583,7 +1583,7 @@ #. **annuler** : Pour annuler les modifications effectués sur cet écran. -**Les équations renceontrées dans les pêcheries** +**Les équations rencontrées dans les pêcheries** ================================================ On donne ici les figures des différents éditeurs d'équations rencontrés dans Modified: trunk/src/site/rst/v3/user/isisFishData.rst =================================================================== --- trunk/src/site/rst/v3/user/isisFishData.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v3/user/isisFishData.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -191,25 +191,25 @@ Dépot de clef publique ssh sur le labs ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - Que ce soit en cliquant sur le lien pour accéder au labs ou en acceptant de - déposer la clef suite à la génération d'une nouvelle clef, la démarche pour - enregistrer votre clef est la même. +Que ce soit en cliquant sur le lien pour accéder au labs ou en acceptant de +déposer la clef suite à la génération d'une nouvelle clef, la démarche pour +enregistrer votre clef est la même. - Tout d'abord le contenu de votre clef publique est inséré dans le presse-papier, - puis un navigateur s'ouvrira sur votre page de login sur le labs. +Tout d'abord le contenu de votre clef publique est inséré dans le presse-papier, +puis un navigateur s'ouvrira sur votre page de login sur le labs. .. image:: images/add_ssh_key_00.png - Une fois authentifié, vous serez automatiquement redirigé sur votre page de - dépot de clef ssh. +Une fois authentifié, vous serez automatiquement redirigé sur votre page de +dépot de clef ssh. .. image:: images/add_ssh_key_01.png - Il vous suffit alors de positionner le curseur sur le dernier caractère de la - zone d'édition (1) (si vous aviez déjà des clefs d'enregistrées) et de coller le - contenu du presse-papier (Ctrl-v), puis valider sur le bouton **Mettre à jour** (2). +Il vous suffit alors de positionner le curseur sur le dernier caractère de la +zone d'édition (1) (si vous aviez déjà des clefs d'enregistrées) et de coller le +contenu du presse-papier (Ctrl-v), puis valider sur le bouton **Mettre à jour** (2). - Vous clef sera active dans les deux heures. +Vous clef sera active dans les deux heures. Validation de la configuration ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Modified: trunk/src/site/rst/v4/devel/index.rst =================================================================== --- trunk/src/site/rst/v4/devel/index.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/devel/index.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -29,5 +29,5 @@ * `Architecture globale`_ * `Architecture Mexico-Plan d analyse`_ -.. _Architecture globale:: architecture.html -.. _Architecture Mexico-Plan d analyse:: architectureMexico.html +.. _Architecture globale: architecture.html +.. _Architecture Mexico-Plan d analyse: architectureMexico.html Modified: trunk/src/site/rst/v4/index.rst =================================================================== --- trunk/src/site/rst/v4/index.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/index.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -50,3 +50,4 @@ .. _Exemples de scripts R: user/scriptsR.html .. _Changements version 4.0: user/changements40.html .. _Migration 3.x vers 4.0: user/migrationv3v4.html +.. _Note aux utilisateurs de CAPARMOR: user/tutorials/utilCaparmor.rst Modified: trunk/src/site/rst/v4/user/FAQ.rst =================================================================== --- trunk/src/site/rst/v4/user/FAQ.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/FAQ.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -333,6 +333,7 @@ Ne serait-il pas plus judicieux de faire impacter uniquement la zone intersection entre la zone metier et la zone pop :: + (N(Zpop,t+1) ~= N(Zpop,t)-F(met)*(N(Zpop,t)*(inter(Zmet,Zpop)/Zpop)) ? Si on veut évaluer l’impact d’une AMP Zg incluse dans Zpop, @@ -350,9 +351,9 @@ * Distinguer 2 zones de population Z1=Zpop-Zg et Z2=Zg, a pour conséquence que l’abondance de Z2 ne sera pas impactée par les captures dans Z1 (permet de modéliser le fait que les poissons dans Z2 sont inféodés à cette zone):: + + N(Z1,t+1) ~= N(Z1,t)-F(met)* N(Z1,t), N(Z2,t+1)= N(Z2,t+1)-exp(-M/12) N(Z2,t) (si pas de migrations) - N(Z1,t+1) ~= N(Z1,t)-F(met)* N(Z1,t), N(Z2,t+1)= N(Z2,t+1)-exp(-M/12) N(Z2,t) (si pas de migrations) - * Pour décrire un phénomène de refuge, il faudrait peut-être rajouter une migration des individus de Z1 dans Z2 en densité dépendance... ? Modified: trunk/src/site/rst/v4/user/installation.rst =================================================================== --- trunk/src/site/rst/v4/user/installation.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/installation.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -234,4 +234,4 @@ `Installation d'ISIS-Caparmor`_ -.. _Installation d'ISIS-Caparmor::installation-isis-caparmor.pdf +.. _Installation d'ISIS-Caparmor: installation-isis-caparmor.pdf Modified: trunk/src/site/rst/v4/user/scripts.rst =================================================================== --- trunk/src/site/rst/v4/user/scripts.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/scripts.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -28,12 +28,12 @@ Cette page a pour vocation d'accueillir des scripts non génériques des utilisateurs qui souhaitent les partager. -Merci d'indiquer - * l'auteur, - * la version pour laquelle le script fonctionne, - * la région, - * de préciser, pour les plans d'analyse, de quel type ils sont (exploration, analyse de sensibilité,...) - * et de produire un descriptif de l'action du script. +Merci d'indiquer: +* l'auteur, +* la version pour laquelle le script fonctionne, +* la région, +* de préciser, pour les plans d'analyse, de quel type ils sont (exploration, analyse de sensibilité,...) +* et de produire un descriptif de l'action du script. Plans de simulation ------------------- Modified: trunk/src/site/rst/v4/user/scriptsR.rst =================================================================== --- trunk/src/site/rst/v4/user/scriptsR.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/scriptsR.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -40,4 +40,4 @@ `Script R pour le traitement des sorties`_ -.. _Script R pour le traitement des sorties:: ../downloads/traitementSorties.R +.. _Script R pour le traitement des sorties: ../downloads/traitementSorties.R Modified: trunk/src/site/rst/v4/user/tutorials/firstLaunch.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/firstLaunch.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/tutorials/firstLaunch.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -41,7 +41,7 @@ `Diaporama pour visualisation hors-ligne`_ -.. _Diaporama pour visualisation hors-ligne:: ../../downloads/demo.odp +.. _Diaporama pour visualisation hors-ligne: ../../downloads/demo.odp -.. TODO JC20100604 Make the links to each page \ No newline at end of file +.. TODO JC20100604 Make the links to each page Modified: trunk/src/site/rst/v4/user/tutorials/parameterising.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/parameterising.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/tutorials/parameterising.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -35,6 +35,6 @@ `Télécharger la base zippée`_ -.. _Télécharger l'exemple en PDF:: ../../downloads/ExempleParametrisation.pdf +.. _Télécharger l'exemple en PDF: ../../downloads/ExempleParametrisation.pdf -.. _Télécharger la base zippée:: ../../downloads/Testparam.zip \ No newline at end of file +.. _Télécharger la base zippée: ../../downloads/Testparam.zip Modified: trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -131,7 +131,7 @@ `Fichiers parametres et matrice`_ -.. _Fichiers parametres et matrice:: ../../downloads/Exemple_directory.zip +.. _Fichiers parametres et matrice: ../../downloads/Exemple_directory.zip *Le script de plan de simulation* (écrit à partir de l'éditeur de scripts) permet de récupérer et modifier les valeurs des paramètres en fonction de la @@ -147,7 +147,7 @@ `Script d'analyse de sensibilite`_ -.. _Script d'analyse de sensibilite:: ../../downloads/Exemple_PlanSimulation.java +.. _Script d'analyse de sensibilite: ../../downloads/Exemple_PlanSimulation.java Plans sequentiels : exemple de calibration par la méthode du simplexe --------------------------------------------------------------------- @@ -168,7 +168,7 @@ `Script de calibration`_ -.. _Script de calibration:: ../../downloads/calibration.java +.. _Script de calibration: ../../downloads/calibration.java Lancement d'un Plan d'analyse ----------------------------- Modified: trunk/src/site/rst/v4/user/tutorials/useAPI.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/useAPI.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/tutorials/useAPI.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -132,4 +132,4 @@ pop.getNaturalDeathRate().setContent(mortalitenaturelle); -.. _Modele ISIS-Fish:: ../isisFishModel.html +.. _Modele ISIS-Fish: ../isisFishModel.html Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-05-29 16:09:40 UTC (rev 83) +++ trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-05-29 17:01:28 UTC (rev 84) @@ -47,7 +47,7 @@ ------------------------------------- Si la simulation s'est terminée mais les résultats n'ont pas été rapatriés, il -faut récupérer le fichier simulation-sim_...-result.zip en le copiant sur le +faut récupérer le fichier simulation-sim...-result.zip en le copiant sur le serveur d'échange par exemple :: cp *-result.zip /home/navidad/partages/echange/sigrid @@ -55,4 +55,4 @@ Commandes Unix -------------- Une page web bien utile pour les commandes Unix en general : -http://www.infres.enst.fr/%7Edanzart/unix_abrege.html#exemples \ No newline at end of file +http://www.infres.enst.fr/%7Edanzart/unix_abrege.html#exemples

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