plot                 package:FLCore                 R Documentation

_M_e_t_h_o_d _p_l_o_t

_D_e_s_c_r_i_p_t_i_o_n:

     Standard plot methods for every FLR class. FLR plot methods are
     based on 'lattice', and attempt to show a general view of the
     object  contents.

     Users are encouraged to write their own plotting code make use of
     the overloaded 'lattice' methods, for example 'xyplot' or
     'bwplot'. See also 'lattice-FLCore'.

_G_e_n_e_r_i_c _f_u_n_c_t_i_o_n:

     plot(x,y)

_M_e_t_h_o_d_s:


      _s_i_g_n_a_t_u_r_e(_x=_F_L_Q_u_a_n_t,_y=_m_i_s_s_i_n_g) : Plot of an _FLQuant_ conditioned
          on all dimension of length > 1.

      _s_i_g_n_a_t_u_r_e(_x=_F_L_Q_u_a_n_t_P_o_i_n_t,_y=_m_i_s_s_i_n_g) : Box and whiskers plot of
          the yearly time series, conditioned on all dimension of
          length > 1.

      _s_i_g_n_a_t_u_r_e(_x=_F_L_P_a_r,_y=_m_i_s_s_i_n_g) : Densityplot per parameter.

      _s_i_g_n_a_t_u_r_e(_x=_F_L_S_t_o_c_k,_y=_m_i_s_s_i_n_g) : Times series of catch and
          landings, recruitment, harvest and spawning stock biomass.

      _s_i_g_n_a_t_u_r_e(_x=_F_L_S_t_o_c_k_s,_y=_m_i_s_s_i_n_g) : Times series of catch,
          recruitment, harvest and spawning stock biomass.

      _s_i_g_n_a_t_u_r_e(_x=_F_L_B_i_o_l,_y=_m_i_s_s_i_n_g) : Time series of SSB and
          recruitment.

      _s_i_g_n_a_t_u_r_e(_x=_F_L_C_o_h_o_r_t,_y=_m_i_s_s_i_n_g) : Plot of an _FLQuant_
          conditioned on all dimension of length > 1.

      _s_i_g_n_a_t_u_r_e(_x=_F_L_I_n_d_e_x,_y=_m_i_s_s_i_n_g) : Either a time series of the
          standardised index by quant, type='ts', or and splom plot of
          a log-linear regression between quants, type='splom'.

      _s_i_g_n_a_t_u_r_e(_x=_F_L_S_R,_y=_m_i_s_s_i_n_g) : A six-panelled plot showing the
          model fit, residuals by year, AR(1) residuals, residuals by
          SSB, residuals by estimated recruits and a normal Q-Q plot.

_A_u_t_h_o_r(_s):

     The FLR Team

_S_e_e _A_l_s_o:

     plot

_E_x_a_m_p_l_e_s:

     # FLQuant
     plot(catch.n(ple4)[, 1:20])
     plot(catch.n(ple4)[, 1:20], type='b', pch=19, cex=0.5)

     # FLStock
     plot(ple4)

     # FLBiol
     plot(ple4.biol)

