2026-06-01 11:40:40,802  INFO [main] (IsisConfig.java:196) getEnvUserHome - Using user home : /home1/datahome/aricouar
2026-06-01 11:40:42,770  INFO [main] (IsisFish.java:135) main - Starting Isis-Fish 4.4.8.1 with args : [--option, launch.ui, false, --option, perform.vcsupdate, false, --option, perform.migration, false, --option, perform.cron, false, --option, isis.home.directory, /home1/scratch/aricouar/myISISdb, --simulateWithSimulation, macco0_eqsearch_sq_hke50_i0055, /home1/datawork/aricouar/ISIS_Travail/datarmor_equilibrium_search/prep/macco0_eqsearch_sq_hke50.zip]
2026-06-01 11:40:42,875  INFO [main] (IsisFish.java:136) main - Date: 01/06/2026 11:40
2026-06-01 11:40:42,892  INFO [main] (IsisFish.java:137) main - Java version: 17.0.10+7, OpenJDK 64-Bit Server VM
2026-06-01 11:40:42,922  INFO [main] (IsisFish.java:138) main - Platform/arch: Linux/3.12.53-60.30-default/amd64
2026-06-01 11:40:42,925  INFO [main] (IsisFish.java:139) main - java.library.path: /appli/R/3.6.3-intel-cc-17.0.2.174/lib64/R/lib:/appli/R/3.6.3-intel-cc-17.0.2.174/notR/lib:/appli/java//jdk1.8.0_66/lib:/appli/java/jdk1.8.0_66/jre/lib/amd64/server:/appli/java/jdk1.8.0_66/lib:/appli/R/3.6.3-intel-cc-17.0.2.174/lib64/R/lib:/appli/R/3.6.3-intel-cc-17.0.2.174/notR/lib:/appli/java//jdk1.8.0_66/lib:/appli/java/jdk1.8.0_66/jre/lib/amd64/server:/appli/java/jdk1.8.0_66/lib:/appli/intel/parallel_studio/parallel_studio_xe_2017_update2/compilers_and_libraries_2017.2.174/linux/mkl/lib/intel64_lin:/appli/intel/parallel_studio/parallel_studio_xe_2017_update2/compilers_and_libraries_2017.2.174/linux/mkl/lib/intel64:/appli/intel/parallel_studio/parallel_studio_xe_2017_update2/impi/2017.2.174/intel64/lib:/usr/X11R6/lib64:/appli/java//jdk1.8.0_66/lib:/appli/intel/parallel_studio/parallel_studio_xe_2017_update2/compilers_and_libraries_2017.2.174/linux/compiler/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/appli/R/3.6.3-intel-cc-17.0.2.174/notR/lib:/appli/R/3.6.3-intel-cc-17.0.2.174/lib:/usr/java/packages/lib:/usr/lib64:/lib64:/lib:/usr/lib
2026-06-01 11:40:42,929  INFO [main] (IsisFish.java:140) main - PATH: /appli/intel/parallel_studio/parallel_studio_xe_2017_update2/impi/2017.2.174/intel64/bin:/appli/java//jdk1.8.0_66/bin:/appli/intel/parallel_studio/parallel_studio_xe_2017_update2/compilers_and_libraries_2017.2.174/linux/bin/intel64:/appli/intel/parallel_studio/parallel_studio_xe_2017_update2/debugger_2017/gdb/intel64:/appli/R/3.6.3-intel-cc-17.0.2.174/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/opt/pbs/default/bin:/usr/lpp/mmfs/bin
2026-06-01 11:40:42,984  INFO [main] (IsisFish.java:165) main - after init done in 2.287.
2026-06-01 11:40:42,989  INFO [main] (SimulationAction.java:173) simulateWithSimulationAndScript - Command line action : simulateWithSimulationAndScript (macco0_eqsearch_sq_hke50_i0055, /home1/datawork/aricouar/ISIS_Travail/datarmor_equilibrium_search/prep/macco0_eqsearch_sq_hke50.zip, null)
2026-06-01 11:40:45,379  INFO [main] (SimulationExecutor.java:87) <init> - SimulationExecutor started with 56 thread for dans un sous processus
2026-06-01 11:40:46,666  INFO [main] (SimulationExecutor.java:87) <init> - SimulationExecutor started with 2 thread for sur le serveur Datarmor
2026-06-01 11:40:46,767  INFO [main] (SimulationExecutor.java:87) <init> - SimulationExecutor started with 2 thread for dans le même processus
2026-06-01 11:40:46,769  INFO [main] (InProcessSimulatorLauncher.java:108) simulate - simulate macco0_eqsearch_sq_hke50_i0055 with file /home1/datawork/aricouar/ISIS_Travail/datarmor_equilibrium_search/prep/macco0_eqsearch_sq_hke50.zip
2026-06-01 11:40:48,143  INFO [main] (SimulationStorage.java:762) importAndRenameZip - Import simulation file /home1/datawork/aricouar/ISIS_Travail/datarmor_equilibrium_search/prep/macco0_eqsearch_sq_hke50.zip in directory /home1/scratch/aricouar/myISISdb/isis-database/simulations and rename from ^.*?/(.*)$ to macco0_eqsearch_sq_hke50_i0055/$1
2026-06-01 11:40:48,195 ERROR [main] (InProcessSimulatorLauncher.java:152) simulate - Can't do simulation macco0_eqsearch_sq_hke50_i0055
java.lang.StringIndexOutOfBoundsException: begin 0, end -1, length 0
	at java.base/java.lang.String.checkBoundsBeginEnd(String.java:4606) ~[?:?]
	at java.base/java.lang.String.substring(String.java:2709) ~[?:?]
	at fr.ifremer.isisfish.datastore.SimulationStorage.importAndRenameZip(SimulationStorage.java:767) ~[isis-fish-4.4.8.1.jar:4.4.8.1]
	at fr.ifremer.isisfish.datastore.SimulationStorage.importAndRenameZip(SimulationStorage.java:728) ~[isis-fish-4.4.8.1.jar:4.4.8.1]
	at fr.ifremer.isisfish.simulator.launcher.InProcessSimulatorLauncher.simulate(InProcessSimulatorLauncher.java:130) [isis-fish-4.4.8.1.jar:4.4.8.1]
	at fr.ifremer.isisfish.actions.SimulationAction.simulateWithSimulationAndScript(SimulationAction.java:201) [isis-fish-4.4.8.1.jar:4.4.8.1]
	at fr.ifremer.isisfish.actions.SimulationAction.simulateWithSimulation(SimulationAction.java:156) [isis-fish-4.4.8.1.jar:4.4.8.1]
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:?]
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) ~[?:?]
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[?:?]
	at java.base/java.lang.reflect.Method.invoke(Method.java:568) ~[?:?]
	at org.nuiton.util.ObjectUtil.call(ObjectUtil.java:375) [nuiton-utils-3.1.jar:3.1]
	at org.nuiton.config.ApplicationConfig$Action.doAction(ApplicationConfig.java:2521) [nuiton-config-3.5.jar:3.5]
	at org.nuiton.config.ApplicationConfig.doAction(ApplicationConfig.java:969) [nuiton-config-3.5.jar:3.5]
	at fr.ifremer.isisfish.IsisFish.main(IsisFish.java:169) [isis-fish-4.4.8.1.jar:4.4.8.1]
Exception in thread "main" java.lang.reflect.InvocationTargetException
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:568)
	at org.nuiton.util.ObjectUtil.call(ObjectUtil.java:375)
	at org.nuiton.config.ApplicationConfig$Action.doAction(ApplicationConfig.java:2521)
	at org.nuiton.config.ApplicationConfig.doAction(ApplicationConfig.java:969)
	at fr.ifremer.isisfish.IsisFish.main(IsisFish.java:169)
Caused by: java.lang.NullPointerException: Cannot invoke "fr.ifremer.isisfish.datastore.SimulationStorage.getStorage()" because "simulation" is null
	at fr.ifremer.isisfish.actions.SimulationAction.simulateWithSimulationAndScript(SimulationAction.java:203)
	at fr.ifremer.isisfish.actions.SimulationAction.simulateWithSimulation(SimulationAction.java:156)
	... 8 more