2019-11-18 16:29:47,560 INFO [main] (IsisFish.java:136) main - Starting Isis-Fish 4.4.2.5 with args : [] 2019-11-18 16:29:47,564 INFO [main] (IsisFish.java:137) main - Date: 18/11/19 16:29 2019-11-18 16:29:47,565 INFO [main] (IsisFish.java:138) main - Java version: 1.8.0_222-8u222-b10-1ubuntu1~16.04.1-b10, OpenJDK 64-Bit Server VM 2019-11-18 16:29:47,565 INFO [main] (IsisFish.java:139) main - Plaform/arch: Linux/amd64 2019-11-18 16:29:47,565 INFO [main] (IsisFish.java:140) main - R_HOME: null 2019-11-18 16:29:47,565 INFO [main] (IsisFish.java:141) main - PATH: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin 2019-11-18 16:29:47,748 WARN [main] (RUtil.java:98) parseRscriptOutput - Can't locate rJava package using Rscript (probably not installed) 2019-11-18 16:29:47,964 INFO [main] (IsisFish.java:354) initVCS - Check state of local repository: /media/zigrid/Belouga/isis-fish-4/isis-database 2019-11-18 16:29:47,967 INFO [main] (VCSSVN.java:144) getSVNManager - Try to connect to http://svn.forge.codelutin.com/svn/isis-fish-data 2019-11-18 16:29:48,771 INFO [main] (VCSSVN.java:236) isConnected - Connexion au serveur disponible, passage en mode connect�� : http://svn.forge.codelutin.com/svn/isis-fish-data 2019-11-18 16:30:42,881 INFO [main] (VCSSVN.java:144) getSVNManager - Try to connect to http://svn.forge.codelutin.com/svn/isis-fish-community 2019-11-18 16:30:43,370 INFO [main] (VCSSVN.java:236) isConnected - Connexion au serveur disponible, passage en mode connect�� : http://svn.forge.codelutin.com/svn/isis-fish-community 2019-11-18 16:30:44,943 INFO [main] (IsisFish.java:166) main - after init done in 57.470. 2019-11-18 16:30:44,949 INFO [Thread-3] (CronService.java:84) run - Starting 1 registered services 2019-11-18 16:30:44,968 INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 11 thread for dans un sous processus 2019-11-18 16:30:45,038 INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 2 thread for sur le serveur Datarmor 2019-11-18 16:30:45,041 INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 2 thread for dans le m��me processus 2019-11-18 16:30:45,199 INFO [AWT-EventQueue-0] (IsisTray.java:117) getInstance - Use system tray: fr.ifremer.isisfish.IsisTray$AWTSystemTray 2019-11-18 16:39:54,290 INFO [AWT-EventQueue-0] (RegionStorage.java:233) getRegion - Try to open region GDL_1.0(/media/zigrid/Belouga/isis-fish-4/isis-database/regions/GDL_1.0) 2019-11-18 16:39:54,293 INFO [AWT-EventQueue-0] (DataStorage.java:205) getStorage - Create new storage for GDL_1.0 2019-11-18 16:39:57,494 WARN [AWT-EventQueue-0] (MatrixType.java:231) splitObjects - Continuing but can't convert object in matrix isisfish.populationSeasonInfo.migration from String: 'org.nuiton.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup#1519921269654#0.793593565257515:Hake Group 0)' 2019-11-18 16:39:57,495 WARN [AWT-EventQueue-0] (MatrixType.java:231) splitObjects - Continuing but can't convert object in matrix isisfish.populationSeasonInfo.migration from String: 'org.nuiton.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup#1519921269655#0.3215207114536598:Hake Group 1)' 2019-11-18 16:39:57,496 WARN [AWT-EventQueue-0] (MatrixType.java:231) splitObjects - Continuing but can't convert object in matrix isisfish.populationSeasonInfo.migration from String: 'org.nuiton.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup#1519921269657#0.05887886441670076:Hake Group 2)' 2019-11-18 16:39:57,496 WARN [AWT-EventQueue-0] (MatrixType.java:231) splitObjects - Continuing but can't convert object in matrix isisfish.populationSeasonInfo.migration from String: 'org.nuiton.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup#1519921269658#0.7268965184844042:Hake Group 3)' 2019-11-18 16:39:57,497 WARN [AWT-EventQueue-0] (MatrixType.java:231) splitObjects - Continuing but can't convert object in matrix isisfish.populationSeasonInfo.migration from String: 'org.nuiton.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup#1519921269659#0.926882565228444:Hake Group 4)' 2019-11-18 16:39:57,497 WARN [AWT-EventQueue-0] (MatrixType.java:231) splitObjects - Continuing but can't convert object in matrix isisfish.populationSeasonInfo.migration from String: 'org.nuiton.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup#1519921269660#0.5766280952940157:Hake Group 5)' etape0 etape1 : lecture plan de combinaisons etape2 : lecture plan des abondances initiales 2019-11-18 16:41:30,182 INFO [AWT-EventQueue-0] (SimulationControl.java:206) setText - backup database en cours 2019-11-18 16:41:30,323 INFO [AWT-EventQueue-0] (SimulationControl.java:206) setText - backup database termin�� 2019-11-18 16:41:30,335 ERROR [AWT-EventQueue-0] (ParamsHandler.java:454) launchSimulation - Can't start simulation java.lang.NullPointerException: null at fr.ifremer.isisfish.simulator.launcher.SimulationService.prepareSimulationZipFile(SimulationService.java:782) ~[isis-fish-4.4.2.5.jar:4.4.2.5] at fr.ifremer.isisfish.simulator.launcher.SimulationService.submit(SimulationService.java:401) ~[isis-fish-4.4.2.5.jar:4.4.2.5] at fr.ifremer.isisfish.ui.simulator.ParamsHandler.launchSimulation(ParamsHandler.java:449) [isis-fish-4.4.2.5.jar:4.4.2.5] at fr.ifremer.isisfish.ui.simulator.ParamsHandler.launchSimulation(ParamsHandler.java:354) [isis-fish-4.4.2.5.jar:4.4.2.5] at fr.ifremer.isisfish.ui.simulator.ParamsUI.doActionPerformed__on__buttonSimulParamsSimulate(ParamsUI.java:363) [isis-fish-4.4.2.5.jar:4.4.2.5] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[?:1.8.0_222] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[?:1.8.0_222] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[?:1.8.0_222] at java.lang.reflect.Method.invoke(Method.java:498) ~[?:1.8.0_222] at jaxx.runtime.JAXXUtil$1.invoke(JAXXUtil.java:253) [jaxx-runtime-2.43.jar:2.43] at com.sun.proxy.$Proxy19.actionPerformed(Unknown Source) [?:?] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) [?:1.8.0_222] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348) [?:1.8.0_222] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) [?:1.8.0_222] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) [?:1.8.0_222] at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252) [?:1.8.0_222] at java.awt.Component.processMouseEvent(Component.java:6539) [?:1.8.0_222] at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) [?:1.8.0_222] at java.awt.Component.processEvent(Component.java:6304) [?:1.8.0_222] at java.awt.Container.processEvent(Container.java:2239) [?:1.8.0_222] at java.awt.Component.dispatchEventImpl(Component.java:4889) [?:1.8.0_222] at java.awt.Container.dispatchEventImpl(Container.java:2297) [?:1.8.0_222] at java.awt.Component.dispatchEvent(Component.java:4711) [?:1.8.0_222] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904) [?:1.8.0_222] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535) [?:1.8.0_222] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476) [?:1.8.0_222] at java.awt.Container.dispatchEventImpl(Container.java:2283) [?:1.8.0_222] at java.awt.Window.dispatchEventImpl(Window.java:2746) [?:1.8.0_222] at java.awt.Component.dispatchEvent(Component.java:4711) [?:1.8.0_222] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760) [?:1.8.0_222] at java.awt.EventQueue.access$500(EventQueue.java:97) [?:1.8.0_222] at java.awt.EventQueue$3.run(EventQueue.java:709) [?:1.8.0_222] at java.awt.EventQueue$3.run(EventQueue.java:703) [?:1.8.0_222] at java.security.AccessController.doPrivileged(Native Method) [?:1.8.0_222] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) [?:1.8.0_222] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84) [?:1.8.0_222] at java.awt.EventQueue$4.run(EventQueue.java:733) [?:1.8.0_222] at java.awt.EventQueue$4.run(EventQueue.java:731) [?:1.8.0_222] at java.security.AccessController.doPrivileged(Native Method) [?:1.8.0_222] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) [?:1.8.0_222] at java.awt.EventQueue.dispatchEvent(EventQueue.java:730) [?:1.8.0_222] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205) [?:1.8.0_222] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) [?:1.8.0_222] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) [?:1.8.0_222] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:1.8.0_222] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) [?:1.8.0_222] at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) [?:1.8.0_222]