2020-01-22 15:18:09,929 INFO [main] (IsisFish.java:136) main - Starting Isis-Fish 4.4.2.5 with args : [] 2020-01-22 15:18:09,936 INFO [main] (IsisFish.java:137) main - Date: 22/01/20 15:18 2020-01-22 15:18:09,936 INFO [main] (IsisFish.java:138) main - Java version: 1.8.0_221-b11, Java HotSpot(TM) 64-Bit Server VM 2020-01-22 15:18:09,937 INFO [main] (IsisFish.java:139) main - Plaform/arch: Mac OS X/x86_64 2020-01-22 15:18:09,937 INFO [main] (IsisFish.java:140) main - R_HOME: null 2020-01-22 15:18:09,937 INFO [main] (IsisFish.java:141) main - PATH: /Library/Frameworks/Python.framework/Versions/3.6/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin 2020-01-22 15:18:10,733 WARN [main] (RUtil.java:98) parseRscriptOutput - Can't locate rJava package using Rscript (probably not installed) 2020-01-22 15:18:11,436 INFO [main] (IsisFish.java:354) initVCS - Check state of local repository: /Users/charlotte/isis-fish-4/isis-database 2020-01-22 15:18:11,444 INFO [main] (VCSSVN.java:144) getSVNManager - Try to connect to http://svn.forge.codelutin.com/svn/isis-fish-data 2020-01-22 15:18:13,459 INFO [main] (VCSSVN.java:236) isConnected - Connexion au serveur disponible, passage en mode connecté : http://svn.forge.codelutin.com/svn/isis-fish-data 2020-01-22 15:18:17,404 INFO [main] (VCSSVN.java:144) getSVNManager - Try to connect to http://svn.forge.codelutin.com/svn/isis-fish-community 2020-01-22 15:18:18,539 INFO [main] (VCSSVN.java:236) isConnected - Connexion au serveur disponible, passage en mode connecté : http://svn.forge.codelutin.com/svn/isis-fish-community 2020-01-22 15:18:20,515 INFO [main] (IsisFish.java:166) main - after init done in 10.785. 2020-01-22 15:18:20,519 INFO [Thread-3] (CronService.java:84) run - Starting 1 registered services 2020-01-22 15:18:20,535 INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 4 thread for dans un sous processus 2020-01-22 15:18:20,725 INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 2 thread for sur le serveur Datarmor 2020-01-22 15:18:20,736 INFO [AWT-EventQueue-0] (SimulationExecutor.java:87) - SimulationExecutor started with 2 thread for dans le même processus 2020-01-22 15:18:20,815 INFO [AWT-EventQueue-0] (IsisTray.java:117) getInstance - Use system tray: fr.ifremer.isisfish.IsisTray$AWTSystemTray 2020-01-22 15:18:33,108 INFO [AWT-EventQueue-0] (RegionStorage.java:233) getRegion - Try to open region SMAC_calib_Sophie(/Users/charlotte/isis-fish-4/isis-database/regions/SMAC_calib_Sophie) 2020-01-22 15:18:33,109 INFO [AWT-EventQueue-0] (DataStorage.java:205) getStorage - Create new storage for SMAC_calib_Sophie 2020-01-22 15:18:36,174 ERROR [AWT-EventQueue-0] (IsisFish.java:681) lambda$null$0 - Global application exception org.hibernate.service.spi.ServiceException: Unable to create requested service [org.hibernate.engine.jdbc.env.spi.JdbcEnvironment] at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:271) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:233) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:210) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.internal.JdbcServicesImpl.configure(JdbcServicesImpl.java:51) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.configureService(StandardServiceRegistryImpl.java:94) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:242) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:210) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.handleTypes(MetadataBuildingProcess.java:352) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:111) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.build(MetadataBuildingProcess.java:83) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.internal.MetadataBuilderImpl.build(MetadataBuilderImpl.java:417) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.internal.MetadataBuilderImpl.build(MetadataBuilderImpl.java:86) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.nuiton.topia.migration.TopiaMigrationEngine.preInit(TopiaMigrationEngine.java:244) ~[topia-service-migration-2.13.jar:2.13] at org.nuiton.topia.framework.TopiaContextImpl.preInitServices(TopiaContextImpl.java:270) ~[topia-persistence-2.13.jar:2.13] at org.nuiton.topia.framework.TopiaContextImpl.(TopiaContextImpl.java:222) ~[topia-persistence-2.13.jar:2.13] at org.nuiton.topia.TopiaContextFactory.getContext(TopiaContextFactory.java:182) ~[topia-persistence-2.13.jar:2.13] at fr.ifremer.isisfish.datastore.DataStorage.getStorage(DataStorage.java:213) ~[isis-fish-4.4.2.5.jar:4.4.2.5] at fr.ifremer.isisfish.ui.input.InputHandler.loadRegion(InputHandler.java:169) ~[isis-fish-4.4.2.5.jar:4.4.2.5] at fr.ifremer.isisfish.ui.input.InputHandler.lambda$regionChange$0(InputHandler.java:237) ~[isis-fish-4.4.2.5.jar:4.4.2.5] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311) ~[?:1.8.0_221] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) ~[?:1.8.0_221] at java.awt.EventQueue.access$500(EventQueue.java:97) ~[?:1.8.0_221] at java.awt.EventQueue$3.run(EventQueue.java:709) ~[?:1.8.0_221] at java.awt.EventQueue$3.run(EventQueue.java:703) ~[?:1.8.0_221] at java.security.AccessController.doPrivileged(Native Method) ~[?:1.8.0_221] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) ~[?:1.8.0_221] at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) ~[?:1.8.0_221] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205) [?:1.8.0_221] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) [?:1.8.0_221] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) [?:1.8.0_221] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:1.8.0_221] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) [?:1.8.0_221] at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) [?:1.8.0_221] Caused by: org.hibernate.HibernateException: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: Row {1} not found in primary index "PUBLIC.SYS_DATA: 180" [90143-197] at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:63) ~[hibernate-hikaricp-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.configureService(StandardServiceRegistryImpl.java:94) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:242) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:210) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.buildJdbcConnectionAccess(JdbcEnvironmentInitiator.java:145) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:66) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:35) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.initiateService(StandardServiceRegistryImpl.java:88) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:259) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] ... 32 more Caused by: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: Row {1} not found in primary index "PUBLIC.SYS_DATA: 180" [90143-197] at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:512) ~[HikariCP-2.5.1.jar:?] at com.zaxxer.hikari.pool.HikariPool.(HikariPool.java:105) ~[HikariCP-2.5.1.jar:?] at com.zaxxer.hikari.HikariDataSource.(HikariDataSource.java:71) ~[HikariCP-2.5.1.jar:?] at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:59) ~[hibernate-hikaricp-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.configureService(StandardServiceRegistryImpl.java:94) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:242) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:210) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.buildJdbcConnectionAccess(JdbcEnvironmentInitiator.java:145) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:66) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:35) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.initiateService(StandardServiceRegistryImpl.java:88) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:259) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] ... 32 more Caused by: org.h2.jdbc.JdbcSQLException: Row {1} not found in primary index "PUBLIC.SYS_DATA: 180" [90143-197] at org.h2.message.DbException.getJdbcSQLException(DbException.java:357) ~[h2-1.4.197.jar:1.4.197] at org.h2.message.DbException.get(DbException.java:179) ~[h2-1.4.197.jar:1.4.197] at org.h2.message.DbException.get(DbException.java:155) ~[h2-1.4.197.jar:1.4.197] at org.h2.mvstore.db.MVPrimaryIndex.getRow(MVPrimaryIndex.java:202) ~[h2-1.4.197.jar:1.4.197] at org.h2.mvstore.db.MVTable.getRow(MVTable.java:492) ~[h2-1.4.197.jar:1.4.197] at org.h2.mvstore.db.MVSecondaryIndex$MVStoreCursor.get(MVSecondaryIndex.java:493) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.Database.open(Database.java:768) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.Database.openDatabase(Database.java:286) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.Database.(Database.java:280) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.Engine.openSession(Engine.java:66) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.Engine.openSession(Engine.java:179) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.Engine.createSessionAndValidate(Engine.java:157) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.Engine.createSession(Engine.java:140) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.Engine.createSession(Engine.java:28) ~[h2-1.4.197.jar:1.4.197] at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:351) ~[h2-1.4.197.jar:1.4.197] at org.h2.jdbc.JdbcConnection.(JdbcConnection.java:124) ~[h2-1.4.197.jar:1.4.197] at org.h2.jdbc.JdbcConnection.(JdbcConnection.java:103) ~[h2-1.4.197.jar:1.4.197] at org.h2.Driver.connect(Driver.java:69) ~[h2-1.4.197.jar:1.4.197] at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:95) ~[HikariCP-2.5.1.jar:?] at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:101) ~[HikariCP-2.5.1.jar:?] at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:341) ~[HikariCP-2.5.1.jar:?] at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:506) ~[HikariCP-2.5.1.jar:?] at com.zaxxer.hikari.pool.HikariPool.(HikariPool.java:105) ~[HikariCP-2.5.1.jar:?] at com.zaxxer.hikari.HikariDataSource.(HikariDataSource.java:71) ~[HikariCP-2.5.1.jar:?] at org.hibernate.hikaricp.internal.HikariCPConnectionProvider.configure(HikariCPConnectionProvider.java:59) ~[hibernate-hikaricp-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.configureService(StandardServiceRegistryImpl.java:94) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:242) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:210) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.buildJdbcConnectionAccess(JdbcEnvironmentInitiator.java:145) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:66) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:35) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.initiateService(StandardServiceRegistryImpl.java:88) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:259) ~[hibernate-core-5.2.18.Final.jar:5.2.18.Final] ... 32 more