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r103 - trunk/src/site/resources/js
by echatellier＠users.forge.codelutin.com Nov. 7, 2012

Nov. 7, 2012

Author: echatellier Date: 2012-11-07 12:54:54 +0100 (Wed, 07 Nov 2012) New Revision: 103 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/103 Log: Fix site deplyed on isis-fish.org. Modified: trunk/src/site/resources/js/maven-isisfish.js Modified: trunk/src/site/resources/js/maven-isisfish.js =================================================================== --- trunk/src/site/resources/js/maven-isisfish.js 2012-11-07 11:42:29 UTC (rev 102) +++ trunk/src/site/resources/js/maven-isisfish.js 2012-11-07 11:54:54 UTC (rev 103) @@ -64,12 +64,16 @@ path = pathname.substr(pathname.indexOf('/site')). replace('/site/', ''); } else { - if (pathname == '/' + projectId + '/') { - // on / page - path = 'index.html'; + if (pathname.lastIndexOf('/' + projectId + '/') === 0) { + if (pathname == '/' + projectId + '/') { + // on / page + path = 'index.html'; + } else { + path = pathname.substr(pathname.indexOf('/' + projectId)). + replace('/' + projectId + '/', ''); + } } else { - path = pathname.substr(pathname.indexOf('/' + projectId)). - replace('/' + projectId + '/', ''); + path = pathname.substr(1); } } path = path.replace('.html', '.' + siteSourcesType);

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r102 - trunk/src/site
by echatellier＠users.forge.codelutin.com Nov. 7, 2012

Nov. 7, 2012

Author: echatellier Date: 2012-11-07 12:42:29 +0100 (Wed, 07 Nov 2012) New Revision: 102 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/102 Log: Fix js link Modified: trunk/src/site/site_en.xml trunk/src/site/site_fr.xml Modified: trunk/src/site/site_en.xml =================================================================== --- trunk/src/site/site_en.xml 2012-11-07 11:33:53 UTC (rev 101) +++ trunk/src/site/site_en.xml 2012-11-07 11:42:29 UTC (rev 102) @@ -60,7 +60,7 @@ <footer> <script type="text/javascript" src="http://code.jquery.com/jquery-1.8.2.min.js"></script> - <script type="text/javascript" src="../js/maven-isisfish.js"></script> + <script type="text/javascript" src="/js/maven-isisfish.js"></script> <div id='projectMetas' projectversion='${project.version}' platform='${project.platform}' Modified: trunk/src/site/site_fr.xml =================================================================== --- trunk/src/site/site_fr.xml 2012-11-07 11:33:53 UTC (rev 101) +++ trunk/src/site/site_fr.xml 2012-11-07 11:42:29 UTC (rev 102) @@ -112,7 +112,7 @@ <footer> <script type="text/javascript" src="http://code.jquery.com/jquery-1.8.2.min.js"></script> - <script type="text/javascript" src="js/maven-isisfish.js"></script> + <script type="text/javascript" src="/js/maven-isisfish.js"></script> <div id='projectMetas' projectversion='${project.version}' platform='${project.platform}'

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r101 - in trunk: . src/site src/site/en/resources/css src/site/en/rst src/site/resources src/site/resources/css src/site/resources/js src/site/resources/v4/downloads src/site/rst src/site/rst/history src/site/rst/tools src/site/rst/v1 src/site/rst/v2 src/site/rst/v2/devel src/site/rst/v2/user src/site/rst/v3 src/site/rst/v3/devel src/site/rst/v3/user src/site/rst/v4 src/site/rst/v4/devel src/site/rst/v4/user src/site/rst/v4/user/tutorials src/site/rst/v4/user/usermanual
by echatellier＠users.forge.codelutin.com Nov. 7, 2012

Nov. 7, 2012

Author: echatellier Date: 2012-11-07 12:33:53 +0100 (Wed, 07 Nov 2012) New Revision: 101 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/101 Log: Update license Fix rst error with jrst 2 Added: trunk/src/site/resources/js/ trunk/src/site/resources/js/maven-isisfish.js Modified: trunk/LICENSE.txt trunk/pom.xml trunk/src/site/en/resources/css/site.css trunk/src/site/en/rst/contact.rst trunk/src/site/en/rst/download.rst trunk/src/site/en/rst/index.rst trunk/src/site/en/rst/license.rst trunk/src/site/en/rst/listStats.rst trunk/src/site/en/rst/publications.rst trunk/src/site/en/rst/research.rst trunk/src/site/resources/css/site.css trunk/src/site/resources/v4/downloads/EffortReduction.java trunk/src/site/resources/v4/downloads/Effort_2000_2004_MultiSp.java trunk/src/site/resources/v4/downloads/Exemple_PlanSimulation.java trunk/src/site/resources/v4/downloads/MigrationAdultsAvrilHistoric.java trunk/src/site/resources/v4/downloads/MigrationAout.java trunk/src/site/resources/v4/downloads/MzonesAnneeMpertMgdg.java trunk/src/site/resources/v4/downloads/Repro_recru0-2_StockOeufs_Spatialisee061107.java trunk/src/site/resources/v4/downloads/TACfix_Es_Anchois.java trunk/src/site/resources/v4/downloads/VBGFAnchois.java trunk/src/site/resources/v4/downloads/Weight_month.java trunk/src/site/resources/v4/downloads/calibration.java trunk/src/site/resources/v4/downloads/prixAnchois.java trunk/src/site/rst/contact.rst trunk/src/site/rst/download.rst trunk/src/site/rst/history.rst trunk/src/site/rst/history/changelog.rst trunk/src/site/rst/history/history.rst trunk/src/site/rst/index.rst trunk/src/site/rst/license.rst trunk/src/site/rst/listStats.rst trunk/src/site/rst/news.rst trunk/src/site/rst/othertools.rst trunk/src/site/rst/presentation.rst trunk/src/site/rst/publications.rst trunk/src/site/rst/research.rst trunk/src/site/rst/tools/eclipse.rst trunk/src/site/rst/tools/netbeans.rst trunk/src/site/rst/v1/changelog.rst trunk/src/site/rst/v2/changelog.rst trunk/src/site/rst/v2/devel/index.rst trunk/src/site/rst/v2/index.rst trunk/src/site/rst/v2/user/ECMAScript.rst trunk/src/site/rst/v2/user/ECMAScriptEdit.rst trunk/src/site/rst/v2/user/FAQ.rst trunk/src/site/rst/v2/user/Rules.rst trunk/src/site/rst/v2/user/ScriptHilaire.rst trunk/src/site/rst/v2/user/SimulationLauncher.rst trunk/src/site/rst/v2/user/index.rst trunk/src/site/rst/v3/changeVersion.rst trunk/src/site/rst/v3/changelog.rst trunk/src/site/rst/v3/devel/SyntaxeOption.rst trunk/src/site/rst/v3/devel/index.rst trunk/src/site/rst/v3/devel/isis-architecture.rst trunk/src/site/rst/v3/devel/usbkey.rst trunk/src/site/rst/v3/index.rst trunk/src/site/rst/v3/user/AnalysePlan.rst trunk/src/site/rst/v3/user/ExternalScriptEditor.rst trunk/src/site/rst/v3/user/FAQ.rst trunk/src/site/rst/v3/user/Historique.rst trunk/src/site/rst/v3/user/Installation.rst trunk/src/site/rst/v3/user/Introduction.rst trunk/src/site/rst/v3/user/LaunchOption.rst trunk/src/site/rst/v3/user/UserInterface.rst trunk/src/site/rst/v3/user/addSshKey.rst trunk/src/site/rst/v3/user/index.rst trunk/src/site/rst/v3/user/inputs.rst trunk/src/site/rst/v3/user/isisFishData.rst trunk/src/site/rst/v3/user/result.rst trunk/src/site/rst/v3/user/scripts.rst trunk/src/site/rst/v3/user/simulations.rst trunk/src/site/rst/v4/devel/architecture.rst trunk/src/site/rst/v4/devel/architectureMexico.rst trunk/src/site/rst/v4/devel/architectureResult.rst trunk/src/site/rst/v4/devel/index.rst trunk/src/site/rst/v4/index.rst trunk/src/site/rst/v4/user/API.rst trunk/src/site/rst/v4/user/FAQ.rst trunk/src/site/rst/v4/user/caparmor.rst trunk/src/site/rst/v4/user/changements40.rst trunk/src/site/rst/v4/user/installation.rst trunk/src/site/rst/v4/user/installationr.rst trunk/src/site/rst/v4/user/isisFishModel.rst trunk/src/site/rst/v4/user/migrationv3v4.rst trunk/src/site/rst/v4/user/scripts.rst trunk/src/site/rst/v4/user/scriptsR.rst trunk/src/site/rst/v4/user/tutorials.rst trunk/src/site/rst/v4/user/tutorials/firstLaunch.rst trunk/src/site/rst/v4/user/tutorials/parameterising.rst trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst trunk/src/site/rst/v4/user/tutorials/useAPI.rst trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst trunk/src/site/rst/v4/user/usermanual.rst trunk/src/site/rst/v4/user/usermanual/GUI.rst trunk/src/site/rst/v4/user/usermanual/analysisPlan.rst trunk/src/site/rst/v4/user/usermanual/inputs.rst trunk/src/site/rst/v4/user/usermanual/introduction.rst trunk/src/site/rst/v4/user/usermanual/launcher.rst trunk/src/site/rst/v4/user/usermanual/queue.rst trunk/src/site/rst/v4/user/usermanual/results.rst trunk/src/site/rst/v4/user/usermanual/scripts.rst trunk/src/site/rst/v4/user/usermanual/sensitivity.rst trunk/src/site/rst/v4/user/warning.rst trunk/src/site/site_en.xml trunk/src/site/site_fr.xml Modified: trunk/LICENSE.txt =================================================================== --- trunk/LICENSE.txt 2012-11-07 09:43:58 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No Surrender of Others' Freedom. + + If conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not -excuse you from the conditions of this License. If you cannot -distribute so as to satisfy simultaneously your obligations under this -License and any other pertinent obligations, then as a consequence you -may not distribute the Program at all. For example, if a patent -license would not permit royalty-free redistribution of the Program by -all those who receive copies directly or indirectly through you, then -the only way you could satisfy both it and this License would be to -refrain entirely from distribution of the Program. +excuse you from the conditions of this License. If you cannot convey a +covered work so as to satisfy simultaneously your obligations under this +License and any other pertinent obligations, then as a consequence you may +not convey it at all. 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If the distribution and/or use of the Program is restricted in -certain countries either by patents or by copyrighted interfaces, the -original copyright holder who places the Program under this License -may add an explicit geographical distribution limitation excluding -those countries, so that distribution is permitted only in or among -countries not thus excluded. In such case, this License incorporates -the limitation as if written in the body of this License. - - 9. The Free Software Foundation may publish revised and/or new versions -of the General Public License from time to time. Such new versions will + The Free Software Foundation may publish revised and/or new versions of +the GNU General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns. -Each version is given a distinguishing version number. If the Program -specifies a version number of this License which applies to it and "any -later version", you have the option of following the terms and conditions -either of that version or of any later version published by the Free -Software Foundation. If the Program does not specify a version number of -this License, you may choose any version ever published by the Free Software -Foundation. + Each version is given a distinguishing version number. If the +Program specifies that a certain numbered version of the GNU General +Public License "or any later version" applies to it, you have the +option of following the terms and conditions either of that numbered +version or of any later version published by the Free Software +Foundation. If the Program does not specify a version number of the +GNU General Public License, you may choose any version ever published +by the Free Software Foundation. - 10. If you wish to incorporate parts of the Program into other free -programs whose distribution conditions are different, write to the author -to ask for permission. For software which is copyrighted by the Free -Software Foundation, write to the Free Software Foundation; we sometimes -make exceptions for this. Our decision will be guided by the two goals -of preserving the free status of all derivatives of our free software and -of promoting the sharing and reuse of software generally. + If the Program specifies that a proxy can decide which future +versions of the GNU General Public License can be used, that proxy's +public statement of acceptance of a version permanently authorizes you +to choose that version for the Program. - NO WARRANTY + Later license versions may give you additional or different +permissions. However, no additional obligations are imposed on any +author or copyright holder as a result of your choosing to follow a +later version. - 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY -FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN -OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES -PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED -OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF -MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS -TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE -PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, -REPAIR OR CORRECTION. + 15. Disclaimer of Warranty. - 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING -WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR -REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, -INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING -OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED -TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY -YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER -PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE -POSSIBILITY OF SUCH DAMAGES. + THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY +APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT +HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY +OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, +THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR +PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM +IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF +ALL NECESSARY SERVICING, REPAIR OR CORRECTION. - END OF TERMS AND CONDITIONS + 16. Limitation of Liability. - How to Apply These Terms to Your New Programs + IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS +THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE +USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF +DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD +PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), +EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF +SUCH DAMAGES. + 17. Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively -convey the exclusion of warranty; and each file should have at least +state the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. <one line to give the program's name and a brief idea of what it does.> Copyright (C) <year> <name of author> - This program is free software; you can redistribute it and/or modify + This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or + the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, @@ -303,37 +644,31 @@ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. - You should have received a copy of the GNU General Public License along - with this program; if not, write to the Free Software Foundation, Inc., - 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. Also add information on how to contact you by electronic and paper mail. -If the program is interactive, make it output a short notice like this -when it starts in an interactive mode: + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: - Gnomovision version 69, Copyright (C) year name of author - Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + <program> Copyright (C) <year> <name of author> + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate -parts of the General Public License. Of course, the commands you use may -be called something other than `show w' and `show c'; they could even be -mouse-clicks or menu items--whatever suits your program. +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". -You should also get your employer (if you work as a programmer) or your -school, if any, to sign a "copyright disclaimer" for the program, if -necessary. Here is a sample; alter the names: + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +<http://www.gnu.org/licenses/>. - Yoyodyne, Inc., hereby disclaims all copyright interest in the program - `Gnomovision' (which makes passes at compilers) written by James Hacker. - - <signature of Ty Coon>, 1 April 1989 - Ty Coon, President of Vice - -This General Public License does not permit incorporating your program into -proprietary programs. If your program is a subroutine library, you may -consider it more useful to permit linking proprietary applications with the -library. If this is what you want to do, use the GNU Lesser General -Public License instead of this License. + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +<http://www.gnu.org/philosophy/why-not-lgpl.html>. Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/pom.xml 2012-11-07 11:33:53 UTC (rev 101) @@ -6,7 +6,7 @@ <parent> <groupId>org.nuiton</groupId> <artifactId>mavenpom4redmine</artifactId> - <version>3.0.6</version> + <version>3.4.3</version> </parent> <groupId>fr.ifremer</groupId> @@ -133,7 +133,8 @@ <projectId>isis-fish-docs</projectId> <platform>forge.codelutin.com</platform> <maven.jar.main.class>fr.ifremer.isisfish.IsisFish</maven.jar.main.class> - <license.licenseName>gpl_v2</license.licenseName> + <license.licenseName>gpl_v3</license.licenseName> + <license.organizationName>Ifremer, Codelutin</license.organizationName> </properties> <distributionManagement> Modified: trunk/src/site/en/resources/css/site.css =================================================================== --- trunk/src/site/en/resources/css/site.css 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/en/resources/css/site.css 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ * $Id: site.css 3124 2010-11-29 18:14:09Z chatellier $ * $HeadURL$ * %% - * Copyright (C) 1999 - 2010 Ifremer, Code Lutin + * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 2 of the + * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, @@ -19,17 +19,10 @@ * * You should have received a copy of the GNU General Public * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-2.0.html>. + * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ -#paypal { - display: none; -} -#Google-AdSense, #Google-search, #googleAnalytics { - display: none; -} - body { background: url(http://flotte.ifremer.fr/extension/ifremer-v4/design/skin-ifremer-v4/images/theme_blue/decor/page-background.gif) repeat 0% 0%; width: 960px; @@ -39,7 +32,7 @@ } #bodyColumn { - padding-top: 25px; + padding-top: 10px; } #contentBox { @@ -79,6 +72,7 @@ #bannerLeft { margin-top: 24px; + float: left; } #bannerRight { @@ -113,6 +107,11 @@ color:#FFE600; } +#leftColumn { + background-color: transparent; + border: medium none; +} + #navcolumn { text-align: right; } @@ -134,6 +133,11 @@ padding-left: 10px; } +#navcolumn li.none { + margin-left: 0; + text-indent: 0; +} + #navcolumn a:link, #navcolumn a:visited, #navcolumn a:active { color: #BCE8FE; } Modified: trunk/src/site/en/rst/contact.rst =================================================================== --- trunk/src/site/en/rst/contact.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/en/rst/contact.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2011 Ifremer, Code Lutin, Chatellier Eric +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -90,5 +90,5 @@ .. _create an account: http://forge.codelutin.com/account/register .. _Bug tracking: http://forge.codelutin.com/projects/isis-fish/issues?set_filter=1&tracker_i… -.. _Featue request: http://forge.codelutin.com/projects/isis-fish/issues?set_filter=1&tracker_i… -.. _Roadmap: http://forge.codelutin.com/projects/isis-fish/roadmap \ No newline at end of file +.. _Feature request: http://forge.codelutin.com/projects/isis-fish/issues?set_filter=1&tracker_i… +.. _Roadmap: http://forge.codelutin.com/projects/isis-fish/roadmap Modified: trunk/src/site/en/rst/download.rst =================================================================== --- trunk/src/site/en/rst/download.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/en/rst/download.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/en/rst/index.rst =================================================================== --- trunk/src/site/en/rst/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/en/rst/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/en/rst/license.rst =================================================================== --- trunk/src/site/en/rst/license.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/en/rst/license.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -1,25 +1,25 @@ .. - .. * #%L .. * IsisFish -.. * +.. * .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. -.. * +.. * .. * This program is distributed in the hope that it will be useful, .. * but WITHOUT ANY WARRANTY; without even the implied warranty of .. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the .. * GNU General Public License for more details. -.. * -.. * You should have received a copy of the GNU General Public +.. * +.. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -28,283 +28,677 @@ :: - GNU GENERAL PUBLIC LICENSE - Version 2, June 1991 - -Copyright (C) 1989, 1991 Free Software Foundation, Inc., -51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA -Everyone is permitted to copy and distribute verbatim copies -of this license document, but changing it is not allowed. - - Preamble - -The licenses for most software are designed to take away your -freedom to share and change it. By contrast, the GNU General Public -License is intended to guarantee your freedom to share and change free -software--to make sure the software is free for all its users. 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Modified: trunk/src/site/en/rst/listStats.rst =================================================================== --- trunk/src/site/en/rst/listStats.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/en/rst/listStats.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -102,4 +102,4 @@ * 2008: 2479 * 2009: 4348 -Total : 12009 \ No newline at end of file +Total : 12009 Modified: trunk/src/site/en/rst/publications.rst =================================================================== --- trunk/src/site/en/rst/publications.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/en/rst/publications.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2011 Ifremer, Code Lutin, Chatellier +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -32,16 +32,16 @@ ===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== Year Publication Download Original publication ===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== -2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant, 2011. 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part2: Sensitivity analysis and management measures.' **Fisheries Research** 108, Issue 1, Pages 174-183 `Here <https://w3.ifremer.fr/archimer/doc/00030/14115/11337.pdf>`_ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ -2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant (2011) 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part1: Parameterization and simulations.' **Fisheries Research** 108, Issue 1, Pages 163-173 `Here <https://w3.ifremer.fr/archimer/doc/00030/14114/11351.pdf>`_ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ -2011 **Marchal, P.**, Little, L.R., and Thébaud, O., 2011. 'Quota allocation in mixed-fisheries: a bioeconomic modelling approach applied to the Channel flatfish fisheries.' **ICES Journal of Marine Science**, 68, 1580–1591. `Here <https://w3.ifremer.fr/archimer/doc/00044/15492/12971.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ -2010 **Lehuta, S.**, Mahévas, S., Petitgas, P. et Pelletier, D., 2010. 'Combining sensitivity and uncertainty analysis to evaluate the impact of management measures with ISIS–Fish: marine protected areas for the Bay of Biscay anchovy(Engraulis encrasicolus) ﬁshery. **ICES journal of Marine science** 67:1063-1075. `Here <http://archimer.ifremer.fr/doc/00011/12234/9281.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ -2009 **Marchal, P.**, Francis, C., Lallemand, P., Lehuta, S., Mahévas, S., Stokes, K. & Vermard,Y., 2009. 'Catch-quota balancing in mixed-fisheries: a bio-economic modelling approach applied to the New Zealand hoki (Macruronus novaezelandiae) fishery' . **Aquatic Living Resource** 22:483-498. `Here <http://archimer.ifremer.fr/doc/00000/11168/7521.pdf>`_ `ALR <http://www.alr-journal.org/>`_ -2009 **Pelletier, D.** , Mahévas, S., Drouineau, H., Vermard, Y., Thebaud, O., Guyader,O. & Poussin, B., 2009. 'Evaluation of the bioeconomic sustainability of multi-species multi-fleet fisheries under a wide range of policy options using ISIS-Fish.' **Ecological Modelling** 220 (7): pp. 1013-1033. `Here <http://archimer.ifremer.fr/doc/2009/publication-6782.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ -2009 **Kraus, G.** , Pelletier, D., Dubreuil, J., Moellmann, C., Hinrichsen, H., Bastardie, F., Vermard,Y. & Mahévas, S., 2009. 'A model-based evaluation of Marine Protected Areas as fishery management tool for a stock facing strong environmental variability - the example of Eastern Baltic cod (Gadus morhua callarias L.).' **ICES Journal of Marine Science** 66: pp. 109-121. `Here <http://archimer.ifremer.fr/doc/2009/publication-6094.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ -2006 **Drouineau, H.** , S. Mahévas, D. Pelletier, B. Beliaeff. 'Assessing the impact of different management options using ISIS-Fish: the French Merluccius merluccius – Nephrops norvegicus mixed fishery of the Bay of Biscay.' **Aquat. Living Resour.** 19, 15–29 `Here <http://archimer.ifremer.fr/doc/2006/publication-1340.pdf>`_ `ALR <http://www.alr-journal.org/>`_ -2005 **Pelletier, D.** & S. Mahévas. 'Fisheries simulation models for evaluating the impact of management policies, with emphasis on marine protected areas.' **Fish and Fisheries** ; 6 (4) : 307-349. `Here <http://archimer.ifremer.fr/doc/2005/publication-1031.pdf>`_ `Fish and Fisheries <http://www.blackwellpublishing.com/>`_ -2004 **Mahévas, S.** & D. Pelletier, 2004. 'ISIS-Fish, a generic and spatially-explicit simulation tool for evaluating the impact of management measures on fisheries dynamics.' **Ecological Modelling** 171, 65-84. `Here <http://archimer.ifremer.fr/doc/2004/publication-1133.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ +2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant, 2011. 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part2: Sensitivity analysis and management measures.' **Fisheries Research** 108, Issue 1, Pages 174-183 `Here <https://w3.ifremer.fr/archimer/doc/00030/14115/11337.pdf>`__ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ +2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant (2011) 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part1: Parameterization and simulations.' **Fisheries Research** 108, Issue 1, Pages 163-173 `Here <https://w3.ifremer.fr/archimer/doc/00030/14114/11351.pdf>`__ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ +2011 **Marchal, P.**, Little, L.R., and Thébaud, O., 2011. 'Quota allocation in mixed-fisheries: a bioeconomic modelling approach applied to the Channel flatfish fisheries.' **ICES Journal of Marine Science**, 68, 1580–1591. `Here <https://w3.ifremer.fr/archimer/doc/00044/15492/12971.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ +2010 **Lehuta, S.**, Mahévas, S., Petitgas, P. et Pelletier, D., 2010. 'Combining sensitivity and uncertainty analysis to evaluate the impact of management measures with ISIS–Fish: marine protected areas for the Bay of Biscay anchovy(Engraulis encrasicolus) ﬁshery. **ICES journal of Marine science** 67:1063-1075. `Here <http://archimer.ifremer.fr/doc/00011/12234/9281.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ +2009 **Marchal, P.**, Francis, C., Lallemand, P., Lehuta, S., Mahévas, S., Stokes, K. & Vermard,Y., 2009. 'Catch-quota balancing in mixed-fisheries: a bio-economic modelling approach applied to the New Zealand hoki (Macruronus novaezelandiae) fishery' . **Aquatic Living Resource** 22:483-498. `Here <http://archimer.ifremer.fr/doc/00000/11168/7521.pdf>`__ `ALR <http://www.alr-journal.org/>`_ +2009 **Pelletier, D.** , Mahévas, S., Drouineau, H., Vermard, Y., Thebaud, O., Guyader,O. & Poussin, B., 2009. 'Evaluation of the bioeconomic sustainability of multi-species multi-fleet fisheries under a wide range of policy options using ISIS-Fish.' **Ecological Modelling** 220 (7): pp. 1013-1033. `Here <http://archimer.ifremer.fr/doc/2009/publication-6782.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ +2009 **Kraus, G.** , Pelletier, D., Dubreuil, J., Moellmann, C., Hinrichsen, H., Bastardie, F., Vermard,Y. & Mahévas, S., 2009. 'A model-based evaluation of Marine Protected Areas as fishery management tool for a stock facing strong environmental variability - the example of Eastern Baltic cod (Gadus morhua callarias L.).' **ICES Journal of Marine Science** 66: pp. 109-121. `Here <http://archimer.ifremer.fr/doc/2009/publication-6094.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ +2006 **Drouineau, H.** , S. Mahévas, D. Pelletier, B. Beliaeff. 'Assessing the impact of different management options using ISIS-Fish: the French Merluccius merluccius – Nephrops norvegicus mixed fishery of the Bay of Biscay.' **Aquat. Living Resour.** 19, 15–29 `Here <http://archimer.ifremer.fr/doc/2006/publication-1340.pdf>`__ `ALR <http://www.alr-journal.org/>`_ +2005 **Pelletier, D.** & S. Mahévas. 'Fisheries simulation models for evaluating the impact of management policies, with emphasis on marine protected areas.' **Fish and Fisheries** ; 6 (4) : 307-349. `Here <http://archimer.ifremer.fr/doc/2005/publication-1031.pdf>`__ `Fish and Fisheries <http://www.blackwellpublishing.com/>`_ +2004 **Mahévas, S.** & D. Pelletier, 2004. 'ISIS-Fish, a generic and spatially-explicit simulation tool for evaluating the impact of management measures on fisheries dynamics.' **Ecological Modelling** 171, 65-84. `Here <http://archimer.ifremer.fr/doc/2004/publication-1133.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ 2001 **Pelletier, D.** , S. Mahévas, B. Poussin, J. Bayon, P. André and J.C. Royer. 2001. 'A conceptual model for evaluating the impact of spatial management measures on the dynamics of a mixed fishery', pp. 53-66 In : G. H. Kruse, N. Bez, T. Booth, M. Dorn, S. Hills, R. Lipcius, D. Pelletier, C. Roy, S. Smith, & D. Witherell (eds), Spatial Processes and Management of Marine Populations. University of Alaska Sea Grant, AK-SG-00-04, Fairbanks ===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== @@ -124,9 +124,9 @@ Period Student School Title Download ========= ========================== =========================================================================================== ================================================================================================================================================================================================= ============================================================= 2011 Hussein Chirine École Pratique des Hautes Études, Mention Systèmes Intégrés, Environnement et Biodiversité. Modélisation de l’impact de la pêche et de la protection sur une ressource exploitée : le sar commun, Diplodus sargus sargus (L., 1758) autour de la réserve naturelle marine de Cerbère-Banyuls. -2007-2010 Lehuta Sigrid « Vie, Agro, Santé » (VAS) Développement d’indicateurs de pêcheries pour évaluer l’impact de mesures de gestion. `Here <http://archimer.ifremer.fr/doc/00025/13630/10712.pdf>`_ -2006-2009 Vermard Youen « Vie, Agro, Santé » (VAS) La compréhension des dynamiques de flottille permet-elle d'améliorer les scénarios de gestion ? `Here <http://archimer.ifremer.fr/doc/00001/11256/7799.pdf>`_ -2004-2007 Drouineau Hilaire « Vie, Agro, Santé » (VAS) Le développement d’un modèle de dynamique de population structuré en longueur et spatialisé – application au Merlu (Merluccius merluccius) d’Atlantique Nord-Est. `Here <http://archimer.ifremer.fr/doc/2008/these-3710.pdf>`_ +2007-2010 Lehuta Sigrid « Vie, Agro, Santé » (VAS) Développement d’indicateurs de pêcheries pour évaluer l’impact de mesures de gestion. `Here <http://archimer.ifremer.fr/doc/00025/13630/10712.pdf>`__ +2006-2009 Vermard Youen « Vie, Agro, Santé » (VAS) La compréhension des dynamiques de flottille permet-elle d'améliorer les scénarios de gestion ? `Here <http://archimer.ifremer.fr/doc/00001/11256/7799.pdf>`__ +2004-2007 Drouineau Hilaire « Vie, Agro, Santé » (VAS) Le développement d’un modèle de dynamique de population structuré en longueur et spatialisé – application au Merlu (Merluccius merluccius) d’Atlantique Nord-Est. `Here <http://archimer.ifremer.fr/doc/2008/these-3710.pdf>`__ ========= ========================== =========================================================================================== ================================================================================================================================================================================================= ============================================================= Post-doctorates Modified: trunk/src/site/en/rst/research.rst =================================================================== --- trunk/src/site/en/rst/research.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/en/rst/research.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/resources/css/site.css =================================================================== --- trunk/src/site/resources/css/site.css 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/css/site.css 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ * $Id: site.css 3124 2010-11-29 18:14:09Z chatellier $ * $HeadURL$ * %% - * Copyright (C) 1999 - 2010 Ifremer, Code Lutin + * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 2 of the + * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, @@ -19,17 +19,10 @@ * * You should have received a copy of the GNU General Public * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-2.0.html>. + * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ -#paypal { - display: none; -} -#Google-AdSense, #Google-search, #googleAnalytics { - display: none; -} - body { background: url(http://flotte.ifremer.fr/extension/ifremer-v4/design/skin-ifremer-v4/images/theme_blue/decor/page-background.gif) repeat 0% 0%; width: 960px; @@ -39,7 +32,7 @@ } #bodyColumn { - padding-top: 25px; + padding-top: 10px; } #contentBox { @@ -79,6 +72,7 @@ #bannerLeft { margin-top: 24px; + float: left; } #bannerRight { @@ -113,6 +107,11 @@ color:#FFE600; } +#leftColumn { + background-color: transparent; + border: medium none; +} + #navcolumn { text-align: right; } @@ -134,6 +133,11 @@ padding-left: 10px; } +#navcolumn li.none { + margin-left: 0; + text-indent: 0; +} + #navcolumn a:link, #navcolumn a:visited, #navcolumn a:active { color: #BCE8FE; } Added: trunk/src/site/resources/js/maven-isisfish.js =================================================================== --- trunk/src/site/resources/js/maven-isisfish.js (rev 0) +++ trunk/src/site/resources/js/maven-isisfish.js 2012-11-07 11:33:53 UTC (rev 101) @@ -0,0 +1,96 @@ +/* + * #%L + * Isis-Fish + * + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + * #L% + */ +$(document).ready(function () { + + var metas = $('#projectMetas'); + var piwikEnabled = metas.attr('piwikEnabled'); + if (piwikEnabled) { + //Piwik Tracking Code + var piwikId = metas.attr('piwikId'); + if (!piwikId) { + + // default piwikId for forge.codelutin.com + piwikId = 4; + } + + console.log("use Piwik with id = " + piwikId); + var pkBaseURL = "https:" == document.location.protocol ? + "https://piwik.codelutin.com/" : + "http://piwik.codelutin.com/"; + $.getScript(pkBaseURL + "piwik.js", function (data, textStatus, jqxhr) { + var piwikTracker = Piwik.getTracker(pkBaseURL + "piwik.php", piwikId); + piwikTracker.trackPageView(); + piwikTracker.enableLinkTracking(); + console.log("piwikTracker loaded = " + piwikTracker); + }); + //Piwik Tracking Code + } + var scmwebeditorenabled = metas.attr('scmwebeditorenabled'); + var scm = metas.attr('scm'); + if (scmwebeditorenabled && scm.indexOf("/trunk") > -1) { + + // allow scmwebeditor is enabled and on trunk + + // remove scm prefix (scm:svn:) + scm = scm.replace('scm:svn:',''); + + var scmurl = metas.attr('scmwebeditorurl'); + var projectId = metas.attr('projectId'); + var siteSourcesType = metas.attr('siteSourcesType'); + var path; + var pathname = document.location.pathname; + if (pathname.indexOf('target/site') > 0) { + path = pathname.substr(pathname.indexOf('/site')). + replace('/site/', ''); + } else { + if (pathname == '/' + projectId + '/') { + // on / page + path = 'index.html'; + } else { + path = pathname.substr(pathname.indexOf('/' + projectId)). + replace('/' + projectId + '/', ''); + } + } + path = path.replace('.html', '.' + siteSourcesType); + + // current page + var url = scmurl + "?address=" + scm + "/src/site/" + siteSourcesType + "/" + path; + console.log("Add scmwebeditor with url = " + url); + var html = "| <a class='externalLink' href='" + url + + "'>Éditer la page</a>"; + var ul = $('#breadcrumbs .xright'); + ul.append(html); + + // menu + var url2; + if (path.lastIndexOf("en/") === 0) { + url = scmurl + "?address=" + scm + "/src/site/site_en.xml"; + } else { + url = scmurl + "?address=" + scm + "/src/site/site_fr.xml"; + } + var html2 = "<a href='" + url + "'>(éditer)</a>"; + var ul2 = $('#navcolumn'); + ul2.append(html2); + } +}); \ No newline at end of file Modified: trunk/src/site/resources/v4/downloads/EffortReduction.java =================================================================== --- trunk/src/site/resources/v4/downloads/EffortReduction.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/EffortReduction.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,5 +1,29 @@ package rules; +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + import static org.nuiton.i18n.I18n._; import java.util.List; Modified: trunk/src/site/resources/v4/downloads/Effort_2000_2004_MultiSp.java =================================================================== --- trunk/src/site/resources/v4/downloads/Effort_2000_2004_MultiSp.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/Effort_2000_2004_MultiSp.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,5 +1,29 @@ package rules; +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + import static org.nuiton.i18n.I18n._; import org.apache.commons.logging.Log; Modified: trunk/src/site/resources/v4/downloads/Exemple_PlanSimulation.java =================================================================== --- trunk/src/site/resources/v4/downloads/Exemple_PlanSimulation.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/Exemple_PlanSimulation.java 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 2 of the + * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ * * You should have received a copy of the GNU General Public * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-2.0.html>. + * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package simulationplans; Modified: trunk/src/site/resources/v4/downloads/MigrationAdultsAvrilHistoric.java =================================================================== --- trunk/src/site/resources/v4/downloads/MigrationAdultsAvrilHistoric.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/MigrationAdultsAvrilHistoric.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,3 +1,26 @@ +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ // Adult migration coefficients {2000,...,2008,mean} double [] gir = {0.2523304,0.2086467,0.5008767,0.1155539,0.1063631,0.5764831,0.2469257,0.2556178,0.3414639,0.289}; double [] lc = {0.05400881,0.16173449,0.04129422,0.14009017,0.29670246,0.00000000,0.30205351,0.14407688,0.19059324,0.148}; Modified: trunk/src/site/resources/v4/downloads/MigrationAout.java =================================================================== --- trunk/src/site/resources/v4/downloads/MigrationAout.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/MigrationAout.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,3 +1,26 @@ +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ if (group.getId() == 1 && "SudGolfe".equals(arrivalZone.getName()) ) return 1; else if(group.getId() ==3 && "SudGolfe".equals(departureZone.getName()) && "Recru".equals(arrivalZone.getName()) ) return 1; else if((group.getId() == 16 || group.getId() == 17) && "MigHiver".equals(arrivalZone.getName()) ){ Modified: trunk/src/site/resources/v4/downloads/MzonesAnneeMpertMgdg.java =================================================================== --- trunk/src/site/resources/v4/downloads/MzonesAnneeMpertMgdg.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/MzonesAnneeMpertMgdg.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,3 +1,26 @@ +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ //test survies martin Date date = context.getSimulationControl().getDate(); Modified: trunk/src/site/resources/v4/downloads/Repro_recru0-2_StockOeufs_Spatialisee061107.java =================================================================== --- trunk/src/site/resources/v4/downloads/Repro_recru0-2_StockOeufs_Spatialisee061107.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/Repro_recru0-2_StockOeufs_Spatialisee061107.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,12 +1,35 @@ +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ //Equation de repro du modele en longueur v3// ////////////////////////////////////////// /*hypothese : il existe une taille minimum et un declencheur (temp etc) -la dur�e de repro depend de la taille en avril +la dur�e de repro depend de la taille en avril Le declencheur a lieu en avril sauf pour rochebonne en mai*/ double ind = 1; double tot = 0.0; -//boucle pour implementer le recrutement observ� +//boucle pour implementer le recrutement observ� if (context.getSimulationControl().getDate().getYear() < 3){ double coeffR = 0; double recru = 0; Modified: trunk/src/site/resources/v4/downloads/TACfix_Es_Anchois.java =================================================================== --- trunk/src/site/resources/v4/downloads/TACfix_Es_Anchois.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/TACfix_Es_Anchois.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,5 +1,29 @@ package rules; +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ + import java.util.HashSet; import java.util.List; import java.util.Set; Modified: trunk/src/site/resources/v4/downloads/VBGFAnchois.java =================================================================== --- trunk/src/site/resources/v4/downloads/VBGFAnchois.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/VBGFAnchois.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,3 +1,26 @@ +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ // Parameters to input double Linf = 18.77; double K = 1.25; Modified: trunk/src/site/resources/v4/downloads/Weight_month.java =================================================================== --- trunk/src/site/resources/v4/downloads/Weight_month.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/Weight_month.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,3 +1,26 @@ +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ //Weight equation /*Based on legth-weight key based on PelGas survey 2000-2005 Modified: trunk/src/site/resources/v4/downloads/calibration.java =================================================================== --- trunk/src/site/resources/v4/downloads/calibration.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/calibration.java 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as - * published by the Free Software Foundation, either version 2 of the + * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, @@ -19,453 +19,455 @@ * * You should have received a copy of the GNU General Public * License along with this program. If not, see - * <http://www.gnu.org/licenses/gpl-2.0.html>. + * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ -package analyseplans; -import static org.codelutin.i18n.I18n._; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import scripts.ResultName; -import java.io.*; -import java.util.*; -import org.codelutin.math.matrix.*; -import org.codelutin.topia.*;// pour pouvoir utiliser la methode StringUtil.toDouble() -import org.codelutin.util.*;// pour pouvoir utiliser la methode StringUtil.toDouble() -import fr.ifremer.isisfish.*; -import fr.ifremer.isisfish.types.*; -import fr.ifremer.isisfish.simulator.SimulationContext; -import fr.ifremer.isisfish.types.Date; -import fr.ifremer.isisfish.entities.*; -import fr.ifremer.isisfish.simulator.AnalysePlan; -import fr.ifremer.isisfish.simulator.AnalysePlanContext; -import fr.ifremer.isisfish.simulator.SimulationParameter; -import fr.ifremer.isisfish.datastore.SimulationStorage; -import fr.ifremer.isisfish.datastore.ResultStorage; - -/** - * /////***File must be copied in isis-database-3/ analyseplans/ - * File name : CalibrationEspeceq1q2Export.java - * /////*** File name could be modified if needed - * /////*** BUT class name must be identical to file name (without the extention ".java") see below - * - * Created: 17 septembre 2007 - * - * @author <> - * @version $Revision$ - * - * Last update: $Date$ - * by : $Author$ - */ - - -/////***You can modify class name if you want -/////***BUT attention : file name and class name must be the same (without the extention ".java"), ie here : "CalibrationEspeceq1q2Export" -public class CalibrationEspeceq1q2Export implements AnalysePlan { - - /** to use log facility, just put in your code: log.info("..."); */ - -/////***class name to check here - static private Log log = LogFactory.getLog(CalibrationEspeceq1q2Export.class); - - enum State {STATE_INIT, STATE_0, STATE_1, STATE_2, STATE_3, STATE_4}; - -/////***here must appear the path to export the historic file ("Historic.csv") where q1, q2 and criteria computed at each simulation are written -/////***Attention : before beginning a new calibration rename your eventual old file Historic.csv otherwise it will be lost - File exportHistoric = new File ("C:Documents and Settings/Sigrid/work/ISIS-FISH/Calibration/Historic.csv"); - protected String exportHisto = ""; - - -//initial points of the simplex - public Population param_Population = null; - public String param_M1 = "2.42e-5;2.11e-6";// devient un parametre du plan d analyse - public String param_M2 = "2.34e-5;2.59e-6";// devient un parametre du plan d analyse - public String param_M3 = "2.59e-5;2.41e-6";// devient un parametre du plan d analyse - //public String param_pas = "1e-5";// devient un parametre du plan d analyse -///// ***put here the path and name of the file containing the data on which you calibrate your fichery ( here observed catches) - public String param_nomfichier_debarquements = "Q:/work/ISIS-FISH/Simu/Calibration/Observedlandings2001-2003.csv";//in row : time ; in columns : age or length group - protected File debarquementsObserves; - protected MatrixND matrixDebarquement; - - protected State state = State.STATE_INIT; - public Experiences experiences = new Experiences(); - public String [] necessaryResult = { - ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET - }; - - public String[] getNecessaryResult() { - return this.necessaryResult; - } - - /** - * Permet d'afficher a l'utilisateur une aide sur le plan. - * @return L'aide ou la description du plan - */ - public String getDescription() throws Exception { - return _("Calibration using variable step Simplex method (Walters): user gives a file of observations (here catches) by time step and group (.csv), output will try to approach oservations by changing the values of catchability"); - } - - /** - * Appele au demarrage de la simulation, cette methode permet d'initialiser - * des valeurs - * @param simulation La simulation pour lequel on utilise cette regle - */ - public void init(AnalysePlanContext context) throws Exception { - if (param_nomfichier_debarquements==null || "".equals(param_nomfichier_debarquements)){ - debarquementsObserves = FileUtil.getFile(".*.csv", "fichier csv s�parateur ';'"); - } else { - debarquementsObserves = new File(param_nomfichier_debarquements); - } - int nbYear = context.getParam().getNumberOfYear(); - - TopiaContext db = context.getParam().getRegion().getStorage().beginTransaction(); - Population pop = (Population)db.findByTopiaId(param_Population.getTopiaId()); - - /////*** specify dimention of the matrix containning observations (observed landings for instance) - /////*** numbers of group/columns : could be equal to your number of classes in ISIS but may also be different if your had only aggregated data - int nbGroup = 4 ; -/////*** enter number of observation per year (if you have observation by quarter put 4) / lines of the observations file - int nbTrim = nbYear * 4; - int [] dimMatrix = {nbTrim,nbGroup}; - matrixDebarquement = MatrixFactory.getInstance().create(dimMatrix); -//matrixDebarquement = MatrixFactory.getInstance().create(new int[]{nbGroup}); -// List<PopulationGroup> groups = pop.getPopulationGroup(); -// matrixDebarquement = MatrixFactory.getInstance().create(new List[]{groups}); - matrixDebarquement.importCSV(new FileReader(debarquementsObserves),new int []{0,0}); - log.info("MatrixDebarquement : " + matrixDebarquement); - db.closeContext(); - } - - /** - * Call before each simulation - * @param context plan context - * @param nextSimulation storage used for next simulation - * @return true if we must do next simulation, false to stop plan - * @throws Exception - */ - double g1; - double g2; - double worst1; - double worst2; - - public boolean beforeSimulation(AnalysePlanContext context, SimulationStorage nextSimulation) throws Exception { - boolean doNext = true; - boolean doBoucle = true; -log.info("before simulation"); - - int number = nextSimulation.getParameter().getAnalysePlanNumber(); - -if (number <3) { -log.info("number<3"); - - String [] M1 = param_M1.split(";"); - String [] M2 = param_M2.split(";"); - String [] M3 = param_M3.split(";"); - - double [] q1 = StringUtil.toArrayDouble(M1[0], M2[0], M3[0]); - double [] q2 = StringUtil.toArrayDouble(M1[1], M2[1], M3[1]); - experiences.getExperience(number).q1 = q1[number]; - experiences.getExperience(number).q2 = q2[number]; - - changeDB(experiences.getExperience(number), nextSimulation); - -} else { - - double q1 = 1000; - double q2 = 1000; - double lastCritere = experiences.getExperience(number-1).criteria; - while (doBoucle){ - doBoucle = false; - if (state == State.STATE_INIT) { -doBoucle = false ; -log.info("state init"); - -//ordonne les 3 premieres experiences selon leur critere -Collections.sort(experiences.current); -//log.info("SIMPLEXE : current 0 = " + experiences.current.get(0).criteria + "current 1 = " + experiences.current.get(1).criteria + "current 2 = " + experiences.current.get(2).criteria ); -log.info("SIMPLEXE : current 0 = " + experiences.current.get(0).criteria + "current 1 = " + experiences.current.get(1).criteria + "current 2 = " + experiences.current.get(2).criteria ); -log.info("SIMPLEXE : Best q1 = " + experiences.current.get(0).q1 + " q2 = " + experiences.current.get(0).q2); -log.info("SIMPLEXE : NextBest q1 = " + experiences.current.get(1).q1 + " q2 = " + experiences.current.get(1).q2); -log.info("SIMPLEXE : Worst q1 = " + experiences.current.get(2).q1 + " q2 = " + experiences.current.get(2).q2); - - -//Calcul et evaluation de R -double g1 = (experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0; -double g2 = (experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0; -double worst1 = experiences.current.get(2).q1; -double worst2 = experiences.current.get(2).q2; - -state = State.STATE_0; - - q1 = 2 * g1 - worst1; - q2 = 2 * g2 - worst2; - -log.info ("R : q1 = " + q1 + " q2 = " + q2 ); - - } else if (state == State.STATE_0) { -doBoucle = false; -log.info("state 0"); - - // on fait la 5eme avec des q qui dependent de la 4eme dans le dernier cas -//log.info("g1 = " + g1 + " " + "g2 = " + g2); -//log.info("worst1 = " + worst1 + " " + "worst2 = " + worst2); - - if (lastCritere > experiences.current.get(2).criteria) { -log.info("State 0 : R : lastCtritere > current2 : R pire de W"); - state = State.STATE_1; - //calcul de Cw - q1 = ((experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0) - ( ((experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0) - experiences.current.get(2).q1 ) / 2.0; - q2 = ((experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0) - ( ((experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0) - experiences.current.get(2).q2 ) / 2.0; -log.info("Cw : q1 = " + q1 + " q2 = " + q2); - - - } else if (lastCritere > experiences.current.get(1).criteria) { -log.info("State 0 :R : lastCritere > current 1 : R meilleur que W et moins bon que N"); - state = State.STATE_2; - // calcul de Cr - q1 = ((experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0) + ( ((experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0) - experiences.current.get(2).q1 ) / 2.0; - q2 = ((experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0) + ( ((experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0) - experiences.current.get(2).q2 ) / 2.0; -log.info("Cr : q1 = " + q1 + " q2 = " + q2); - - } else if (lastCritere > experiences.current.get(0).criteria) { -log.info("State 0 :R : lastCritere > current0 : R meilleur que N et moins bon que B"); - state = State.STATE_INIT; - experiences.current.remove(2);//remove(3)avant - doBoucle = true; -log.info("remove W, simplex BNR"); - - } else { // dernier cas possible: if (lastCritere < experiences.current.get(0).critere) { -log.info("State 0 :R : lastCritere < current 0 : R meilleur que B, calcul de E"); - state = State.STATE_4; - - q1 = experiences.getExperience(number-1).q1 + (experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0 - experiences.current.get(2).q1; - q2 = experiences.getExperience(number-1).q2 + (experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0 - experiences.current.get(2).q2; - //q1 = experiences.current.get(3).q1 + (experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0 - experiences.current.get(2).q1; - //q2 = experiences.current.get(3).q2 + (experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0 - experiences.current.get(2).q2; -log.info("E : q1 = " + q1 + " q2 = " + q2); - } - - } else if (state == State.STATE_1) { -log.info("state 1, simplex BNCw"); - experiences.current.remove(3); - experiences.current.remove(2); - state = State.STATE_INIT; - doBoucle = true; - - - } else if (state == State.STATE_2) { -log.info("state 2, simplex BNCr"); - experiences.current.remove(3); - experiences.current.remove(2); - state = State.STATE_INIT; - doBoucle = true; - - - } else if (state == State.STATE_4) { -log.info("state 4 :comparaison de E a B"); - doBoucle = true; - if (lastCritere < experiences.current.get(0).criteria) { -log.info("E meilleur que B, remove 2 et 3 : simplex BNE"); - experiences.current.remove(3); - experiences.current.remove(2); - } else { -log.info("E moins bon que B, remove 2 et 4, simplex BNR"); - experiences.current.remove(4); - experiences.current.remove(2); - } - - state = State.STATE_INIT; - } - - -}//fin du while -//on remplit la table experiences - experiences.getExperience(number).q1 = q1; - experiences.getExperience(number).q2 = q2; - -log.info("on change Q dans la DB avec : q1 = " + q1 + " " + "q2 = " + q2); - -// on change la valeur de q dans la DB - changeDB(experiences.getExperience(number), nextSimulation); - }// fin du else (number > 3) -return doNext; - }// fin du before simulation - - - - /** - - * Call after each simulation, compute criteria for last simulation - * @param context plan context - * @param nextSimulation storage used for next simulation - * @return true if we must do next simulation, false to stop plan - * @throws Exception - */ - - public boolean afterSimulation(AnalysePlanContext context, SimulationStorage lastSimulation) throws Exception { - boolean doNext = true; -log.info("after simulation"); - int number = lastSimulation.getParameter().getAnalysePlanNumber(); - ResultStorage result = lastSimulation.getResultStorage(); - -/////*** Simulated catches are cumulated over strategies, areas and metiers - - MatrixND L2 = result.getMatrix(param_Population, ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET); -// log.info("dim de L2" + " " + Arrays.toString(L2.getDim())); -/////*** If some strategies, metiers or areas must not be included in the cumulated catches see below else put "//" at the beginning of line 297 and replace "L2" by "L" at line 289 -/////*** the strategies or so to exclude must be at the begining or end of the list you enter in the parameters interface -/////*** fill the line MatrixND L = L2.getSubMatrix(a,b,c).copy(); as follow : -/////*** a = 1 if you want to exclude strategies, 2 if metiers and 4 if areas -/////*** b = indice of the first object considered -/////*** c = number of object to keep after b, b included - MatrixND L = L2.getSubMatrix(1,2,4).copy(); // for instance : keep strategies 2,3,4,5 -//log.info("sous matrice extraite"); - L = L.sumOverDim(1);// sum over strategies - L = L.sumOverDim(2);// sum over metiers - L = L.sumOverDim(4);// sum over zones -log.info("sommes sur les strategies, metiers et zones faites"); - -/////*** if observations are cumulated by groups else put "//" at the beginning of the following line -L = L.sumOverDim(3); -/////*** else if number of groups in your database differs from number of groups in observations ... write me an e-mail - -////*** if observations are cumulated over quarter a = 3, over year a = 12, else put "//" at the beginning of the following line - L = L.sumOverDim(0,a); - - L = L.reduce(); - - -///////////////////Calcul du critere////////////////// -log.info("calcul du critere"); -log.info("dim de L" + " " + Arrays.toString(L.getDim())); -log.info("dim de obs" + " " + Arrays.toString(matrixDebarquement.getDim())); - double crit = 0; - for ( MatrixIterator g = L.iterator(); g.hasNext();){ - g.next(); -//boucle sur les trimestres et les classes d age - - int [] dim = g.getCoordinates(); - - double obs = matrixDebarquement.getValue(dim); - double simules = g.getValue(); - - crit += Math.pow(obs-simules, 2); // crit = crit + (obs-simules)^2 - }// fin du for -log.info("critere " + number + " = " + crit ); - -//ajoute le critere dans la table experiences - experiences.getExperience(number).criteria = crit; - -//ecriture de la table historic -exportHisto += experiences.getExperience(number).q1 +";"+ experiences.getExperience(number).q2 +";"+ experiences.getExperience(number).criteria + "\n"; -org.codelutin.util.FileUtil.writeString(exportHistoric, exportHisto); - - -return doNext; - -}// fin du after simulation - - /** - * Modify nextSimulation database with q1 and q2 in exp. - * @param exp - * @param nextSimulation - * @throws Exception - */ - - - protected void changeDB(Experience exp, SimulationStorage nextSimulation) throws Exception { -//methode appelee dans before simualtion - TopiaContext db = nextSimulation.getStorage().beginTransaction();//ouvrir un context pour modifier les donnees - Population pop = (Population)db.findByTopiaId(param_Population.getTopiaId()); //reccupere la pop ciblee - MatrixND c = pop.getCapturability(); // reccupere la matrice de capturabilit� - -//log.info("Pour cette simulation : q1 = " + exp.q1 + ";" + "q2 = " + exp.q2 ); - -/////*** that is where you explain how to fill the catchability matrix with q1 and q2 - for (MatrixIterator i = c.iterator(); i.hasNext();){ - i.next(); - Object [] sem = i.getSemanticsCoordinates(); - PopulationGroup group = (PopulationGroup)sem[0]; - PopulationSeasonInfo season = (PopulationSeasonInfo)sem[1]; - -////*** exemple when q2 corresponds to the 12 first groups (groups 0 to 11) - if (group.getId() < 12){ - i.setValue(exp.q2); - }else { - i.setValue(exp.q1); - } - -/////*** exemple when it depends on seasons and groups -/* if (season.getFirstMonth().after(Month.JULY) && group.getId() >=18){ //month >= aout && groupID >= 18 - i.setValue(exp.q2); - }else { - i.setValue(exp.q1); - } -*/ - - }//fin du for - - db.commitTransaction(); // effectue la modification - db.closeContext(); // ferme le context -} - - - - - static public class Experiences { -// cree la liste experiences ou sont stoqu�s q1,q2 et critere pour chaque simulation - - /** contains last simplex and potentialy 2 more simulation */ - public List<Experience> current = new ArrayList<Experience>(); - - /** contains all experience done */ - public List<Experience> history = new ArrayList<Experience>(); - /** - * return experience requested, if this experience doesn't exist - * create it. - * - * @param i simulation number - * @return experience with simulation number fixed if new experience - * is returned - */ - public Experience getExperience(int i) { - Experience result; - if (i<history.size()) { - result = history.get(i); - } else { - result = new Experience(); - result.simNumber = i; - history.add(i, result); - current.add(result); - } - return result; - }//fin de la definition de getExperience - - -/** - * @return the history - */ - public List<Experience> getHistory() { - return this.history; - } - }// fin de la creation des listes experiences - - - - static public class Experience implements Comparable { - public int simNumber; - public double criteria; - public double q1; - public double q2; - /** - * Permit to order experience, first is experience with smallest criteria - */ - public int compareTo(Object arg0) { - Experience other = (Experience)arg0; - int result = Double.compare(this.criteria, other.criteria); - return result; - } - } - - -} \ No newline at end of file + +package analyseplans; + +import static org.codelutin.i18n.I18n._; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import scripts.ResultName; +import java.io.*; +import java.util.*; +import org.codelutin.math.matrix.*; +import org.codelutin.topia.*;// pour pouvoir utiliser la methode StringUtil.toDouble() +import org.codelutin.util.*;// pour pouvoir utiliser la methode StringUtil.toDouble() +import fr.ifremer.isisfish.*; +import fr.ifremer.isisfish.types.*; +import fr.ifremer.isisfish.simulator.SimulationContext; +import fr.ifremer.isisfish.types.Date; +import fr.ifremer.isisfish.entities.*; +import fr.ifremer.isisfish.simulator.AnalysePlan; +import fr.ifremer.isisfish.simulator.AnalysePlanContext; +import fr.ifremer.isisfish.simulator.SimulationParameter; +import fr.ifremer.isisfish.datastore.SimulationStorage; +import fr.ifremer.isisfish.datastore.ResultStorage; + +/** + * /////***File must be copied in isis-database-3/ analyseplans/ + * File name : CalibrationEspeceq1q2Export.java + * /////*** File name could be modified if needed + * /////*** BUT class name must be identical to file name (without the extention ".java") see below + * + * Created: 17 septembre 2007 + * + * @author <> + * @version $Revision$ + * + * Last update: $Date$ + * by : $Author$ + */ + + +/////***You can modify class name if you want +/////***BUT attention : file name and class name must be the same (without the extention ".java"), ie here : "CalibrationEspeceq1q2Export" +public class CalibrationEspeceq1q2Export implements AnalysePlan { + + /** to use log facility, just put in your code: log.info("..."); */ + +/////***class name to check here + static private Log log = LogFactory.getLog(CalibrationEspeceq1q2Export.class); + + enum State {STATE_INIT, STATE_0, STATE_1, STATE_2, STATE_3, STATE_4}; + +/////***here must appear the path to export the historic file ("Historic.csv") where q1, q2 and criteria computed at each simulation are written +/////***Attention : before beginning a new calibration rename your eventual old file Historic.csv otherwise it will be lost + File exportHistoric = new File ("C:Documents and Settings/Sigrid/work/ISIS-FISH/Calibration/Historic.csv"); + protected String exportHisto = ""; + + +//initial points of the simplex + public Population param_Population = null; + public String param_M1 = "2.42e-5;2.11e-6";// devient un parametre du plan d analyse + public String param_M2 = "2.34e-5;2.59e-6";// devient un parametre du plan d analyse + public String param_M3 = "2.59e-5;2.41e-6";// devient un parametre du plan d analyse + //public String param_pas = "1e-5";// devient un parametre du plan d analyse +///// ***put here the path and name of the file containing the data on which you calibrate your fichery ( here observed catches) + public String param_nomfichier_debarquements = "Q:/work/ISIS-FISH/Simu/Calibration/Observedlandings2001-2003.csv";//in row : time ; in columns : age or length group + protected File debarquementsObserves; + protected MatrixND matrixDebarquement; + + protected State state = State.STATE_INIT; + public Experiences experiences = new Experiences(); + public String [] necessaryResult = { + ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET + }; + + public String[] getNecessaryResult() { + return this.necessaryResult; + } + + /** + * Permet d'afficher a l'utilisateur une aide sur le plan. + * @return L'aide ou la description du plan + */ + public String getDescription() throws Exception { + return _("Calibration using variable step Simplex method (Walters): user gives a file of observations (here catches) by time step and group (.csv), output will try to approach oservations by changing the values of catchability"); + } + + /** + * Appele au demarrage de la simulation, cette methode permet d'initialiser + * des valeurs + * @param simulation La simulation pour lequel on utilise cette regle + */ + public void init(AnalysePlanContext context) throws Exception { + if (param_nomfichier_debarquements==null || "".equals(param_nomfichier_debarquements)){ + debarquementsObserves = FileUtil.getFile(".*.csv", "fichier csv s�parateur ';'"); + } else { + debarquementsObserves = new File(param_nomfichier_debarquements); + } + int nbYear = context.getParam().getNumberOfYear(); + + TopiaContext db = context.getParam().getRegion().getStorage().beginTransaction(); + Population pop = (Population)db.findByTopiaId(param_Population.getTopiaId()); + + /////*** specify dimention of the matrix containning observations (observed landings for instance) + /////*** numbers of group/columns : could be equal to your number of classes in ISIS but may also be different if your had only aggregated data + int nbGroup = 4 ; +/////*** enter number of observation per year (if you have observation by quarter put 4) / lines of the observations file + int nbTrim = nbYear * 4; + int [] dimMatrix = {nbTrim,nbGroup}; + matrixDebarquement = MatrixFactory.getInstance().create(dimMatrix); +//matrixDebarquement = MatrixFactory.getInstance().create(new int[]{nbGroup}); +// List<PopulationGroup> groups = pop.getPopulationGroup(); +// matrixDebarquement = MatrixFactory.getInstance().create(new List[]{groups}); + matrixDebarquement.importCSV(new FileReader(debarquementsObserves),new int []{0,0}); + log.info("MatrixDebarquement : " + matrixDebarquement); + db.closeContext(); + } + + /** + * Call before each simulation + * @param context plan context + * @param nextSimulation storage used for next simulation + * @return true if we must do next simulation, false to stop plan + * @throws Exception + */ + double g1; + double g2; + double worst1; + double worst2; + + public boolean beforeSimulation(AnalysePlanContext context, SimulationStorage nextSimulation) throws Exception { + boolean doNext = true; + boolean doBoucle = true; +log.info("before simulation"); + + int number = nextSimulation.getParameter().getAnalysePlanNumber(); + +if (number <3) { +log.info("number<3"); + + String [] M1 = param_M1.split(";"); + String [] M2 = param_M2.split(";"); + String [] M3 = param_M3.split(";"); + + double [] q1 = StringUtil.toArrayDouble(M1[0], M2[0], M3[0]); + double [] q2 = StringUtil.toArrayDouble(M1[1], M2[1], M3[1]); + experiences.getExperience(number).q1 = q1[number]; + experiences.getExperience(number).q2 = q2[number]; + + changeDB(experiences.getExperience(number), nextSimulation); + +} else { + + double q1 = 1000; + double q2 = 1000; + double lastCritere = experiences.getExperience(number-1).criteria; + while (doBoucle){ + doBoucle = false; + if (state == State.STATE_INIT) { +doBoucle = false ; +log.info("state init"); + +//ordonne les 3 premieres experiences selon leur critere +Collections.sort(experiences.current); +//log.info("SIMPLEXE : current 0 = " + experiences.current.get(0).criteria + "current 1 = " + experiences.current.get(1).criteria + "current 2 = " + experiences.current.get(2).criteria ); +log.info("SIMPLEXE : current 0 = " + experiences.current.get(0).criteria + "current 1 = " + experiences.current.get(1).criteria + "current 2 = " + experiences.current.get(2).criteria ); +log.info("SIMPLEXE : Best q1 = " + experiences.current.get(0).q1 + " q2 = " + experiences.current.get(0).q2); +log.info("SIMPLEXE : NextBest q1 = " + experiences.current.get(1).q1 + " q2 = " + experiences.current.get(1).q2); +log.info("SIMPLEXE : Worst q1 = " + experiences.current.get(2).q1 + " q2 = " + experiences.current.get(2).q2); + + +//Calcul et evaluation de R +double g1 = (experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0; +double g2 = (experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0; +double worst1 = experiences.current.get(2).q1; +double worst2 = experiences.current.get(2).q2; + +state = State.STATE_0; + + q1 = 2 * g1 - worst1; + q2 = 2 * g2 - worst2; + +log.info ("R : q1 = " + q1 + " q2 = " + q2 ); + + } else if (state == State.STATE_0) { +doBoucle = false; +log.info("state 0"); + + // on fait la 5eme avec des q qui dependent de la 4eme dans le dernier cas +//log.info("g1 = " + g1 + " " + "g2 = " + g2); +//log.info("worst1 = " + worst1 + " " + "worst2 = " + worst2); + + if (lastCritere > experiences.current.get(2).criteria) { +log.info("State 0 : R : lastCtritere > current2 : R pire de W"); + state = State.STATE_1; + //calcul de Cw + q1 = ((experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0) - ( ((experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0) - experiences.current.get(2).q1 ) / 2.0; + q2 = ((experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0) - ( ((experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0) - experiences.current.get(2).q2 ) / 2.0; +log.info("Cw : q1 = " + q1 + " q2 = " + q2); + + + } else if (lastCritere > experiences.current.get(1).criteria) { +log.info("State 0 :R : lastCritere > current 1 : R meilleur que W et moins bon que N"); + state = State.STATE_2; + // calcul de Cr + q1 = ((experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0) + ( ((experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0) - experiences.current.get(2).q1 ) / 2.0; + q2 = ((experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0) + ( ((experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0) - experiences.current.get(2).q2 ) / 2.0; +log.info("Cr : q1 = " + q1 + " q2 = " + q2); + + } else if (lastCritere > experiences.current.get(0).criteria) { +log.info("State 0 :R : lastCritere > current0 : R meilleur que N et moins bon que B"); + state = State.STATE_INIT; + experiences.current.remove(2);//remove(3)avant + doBoucle = true; +log.info("remove W, simplex BNR"); + + } else { // dernier cas possible: if (lastCritere < experiences.current.get(0).critere) { +log.info("State 0 :R : lastCritere < current 0 : R meilleur que B, calcul de E"); + state = State.STATE_4; + + q1 = experiences.getExperience(number-1).q1 + (experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0 - experiences.current.get(2).q1; + q2 = experiences.getExperience(number-1).q2 + (experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0 - experiences.current.get(2).q2; + //q1 = experiences.current.get(3).q1 + (experiences.current.get(0).q1 + experiences.current.get(1).q1) / 2.0 - experiences.current.get(2).q1; + //q2 = experiences.current.get(3).q2 + (experiences.current.get(0).q2 + experiences.current.get(1).q2) / 2.0 - experiences.current.get(2).q2; +log.info("E : q1 = " + q1 + " q2 = " + q2); + } + + } else if (state == State.STATE_1) { +log.info("state 1, simplex BNCw"); + experiences.current.remove(3); + experiences.current.remove(2); + state = State.STATE_INIT; + doBoucle = true; + + + } else if (state == State.STATE_2) { +log.info("state 2, simplex BNCr"); + experiences.current.remove(3); + experiences.current.remove(2); + state = State.STATE_INIT; + doBoucle = true; + + + } else if (state == State.STATE_4) { +log.info("state 4 :comparaison de E a B"); + doBoucle = true; + if (lastCritere < experiences.current.get(0).criteria) { +log.info("E meilleur que B, remove 2 et 3 : simplex BNE"); + experiences.current.remove(3); + experiences.current.remove(2); + } else { +log.info("E moins bon que B, remove 2 et 4, simplex BNR"); + experiences.current.remove(4); + experiences.current.remove(2); + } + + state = State.STATE_INIT; + } + + +}//fin du while +//on remplit la table experiences + experiences.getExperience(number).q1 = q1; + experiences.getExperience(number).q2 = q2; + +log.info("on change Q dans la DB avec : q1 = " + q1 + " " + "q2 = " + q2); + +// on change la valeur de q dans la DB + changeDB(experiences.getExperience(number), nextSimulation); + }// fin du else (number > 3) +return doNext; + }// fin du before simulation + + + + /** + + * Call after each simulation, compute criteria for last simulation + * @param context plan context + * @param nextSimulation storage used for next simulation + * @return true if we must do next simulation, false to stop plan + * @throws Exception + */ + + public boolean afterSimulation(AnalysePlanContext context, SimulationStorage lastSimulation) throws Exception { + boolean doNext = true; +log.info("after simulation"); + int number = lastSimulation.getParameter().getAnalysePlanNumber(); + ResultStorage result = lastSimulation.getResultStorage(); + +/////*** Simulated catches are cumulated over strategies, areas and metiers + + MatrixND L2 = result.getMatrix(param_Population, ResultName.MATRIX_CATCH_WEIGHT_PER_STRATEGY_MET); +// log.info("dim de L2" + " " + Arrays.toString(L2.getDim())); +/////*** If some strategies, metiers or areas must not be included in the cumulated catches see below else put "//" at the beginning of line 297 and replace "L2" by "L" at line 289 +/////*** the strategies or so to exclude must be at the begining or end of the list you enter in the parameters interface +/////*** fill the line MatrixND L = L2.getSubMatrix(a,b,c).copy(); as follow : +/////*** a = 1 if you want to exclude strategies, 2 if metiers and 4 if areas +/////*** b = indice of the first object considered +/////*** c = number of object to keep after b, b included + MatrixND L = L2.getSubMatrix(1,2,4).copy(); // for instance : keep strategies 2,3,4,5 +//log.info("sous matrice extraite"); + L = L.sumOverDim(1);// sum over strategies + L = L.sumOverDim(2);// sum over metiers + L = L.sumOverDim(4);// sum over zones +log.info("sommes sur les strategies, metiers et zones faites"); + +/////*** if observations are cumulated by groups else put "//" at the beginning of the following line +L = L.sumOverDim(3); +/////*** else if number of groups in your database differs from number of groups in observations ... write me an e-mail + +////*** if observations are cumulated over quarter a = 3, over year a = 12, else put "//" at the beginning of the following line + L = L.sumOverDim(0,a); + + L = L.reduce(); + + +///////////////////Calcul du critere////////////////// +log.info("calcul du critere"); +log.info("dim de L" + " " + Arrays.toString(L.getDim())); +log.info("dim de obs" + " " + Arrays.toString(matrixDebarquement.getDim())); + double crit = 0; + for ( MatrixIterator g = L.iterator(); g.hasNext();){ + g.next(); +//boucle sur les trimestres et les classes d age + + int [] dim = g.getCoordinates(); + + double obs = matrixDebarquement.getValue(dim); + double simules = g.getValue(); + + crit += Math.pow(obs-simules, 2); // crit = crit + (obs-simules)^2 + }// fin du for +log.info("critere " + number + " = " + crit ); + +//ajoute le critere dans la table experiences + experiences.getExperience(number).criteria = crit; + +//ecriture de la table historic +exportHisto += experiences.getExperience(number).q1 +";"+ experiences.getExperience(number).q2 +";"+ experiences.getExperience(number).criteria + "\n"; +org.codelutin.util.FileUtil.writeString(exportHistoric, exportHisto); + + +return doNext; + +}// fin du after simulation + + /** + * Modify nextSimulation database with q1 and q2 in exp. + * @param exp + * @param nextSimulation + * @throws Exception + */ + + + protected void changeDB(Experience exp, SimulationStorage nextSimulation) throws Exception { +//methode appelee dans before simualtion + TopiaContext db = nextSimulation.getStorage().beginTransaction();//ouvrir un context pour modifier les donnees + Population pop = (Population)db.findByTopiaId(param_Population.getTopiaId()); //reccupere la pop ciblee + MatrixND c = pop.getCapturability(); // reccupere la matrice de capturabilit� + +//log.info("Pour cette simulation : q1 = " + exp.q1 + ";" + "q2 = " + exp.q2 ); + +/////*** that is where you explain how to fill the catchability matrix with q1 and q2 + for (MatrixIterator i = c.iterator(); i.hasNext();){ + i.next(); + Object [] sem = i.getSemanticsCoordinates(); + PopulationGroup group = (PopulationGroup)sem[0]; + PopulationSeasonInfo season = (PopulationSeasonInfo)sem[1]; + +////*** exemple when q2 corresponds to the 12 first groups (groups 0 to 11) + if (group.getId() < 12){ + i.setValue(exp.q2); + }else { + i.setValue(exp.q1); + } + +/////*** exemple when it depends on seasons and groups +/* if (season.getFirstMonth().after(Month.JULY) && group.getId() >=18){ //month >= aout && groupID >= 18 + i.setValue(exp.q2); + }else { + i.setValue(exp.q1); + } +*/ + + }//fin du for + + db.commitTransaction(); // effectue la modification + db.closeContext(); // ferme le context +} + + + + + static public class Experiences { +// cree la liste experiences ou sont stoqu�s q1,q2 et critere pour chaque simulation + + /** contains last simplex and potentialy 2 more simulation */ + public List<Experience> current = new ArrayList<Experience>(); + + /** contains all experience done */ + public List<Experience> history = new ArrayList<Experience>(); + /** + * return experience requested, if this experience doesn't exist + * create it. + * + * @param i simulation number + * @return experience with simulation number fixed if new experience + * is returned + */ + public Experience getExperience(int i) { + Experience result; + if (i<history.size()) { + result = history.get(i); + } else { + result = new Experience(); + result.simNumber = i; + history.add(i, result); + current.add(result); + } + return result; + }//fin de la definition de getExperience + + +/** + * @return the history + */ + public List<Experience> getHistory() { + return this.history; + } + }// fin de la creation des listes experiences + + + + static public class Experience implements Comparable { + public int simNumber; + public double criteria; + public double q1; + public double q2; + /** + * Permit to order experience, first is experience with smallest criteria + */ + public int compareTo(Object arg0) { + Experience other = (Experience)arg0; + int result = Double.compare(this.criteria, other.criteria); + return result; + } + } + + +} Modified: trunk/src/site/resources/v4/downloads/prixAnchois.java =================================================================== --- trunk/src/site/resources/v4/downloads/prixAnchois.java 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/resources/v4/downloads/prixAnchois.java 2012-11-07 11:33:53 UTC (rev 101) @@ -1,3 +1,26 @@ +/* + * #%L + * IsisFish + * $Id:$ + * $HeadURL:$ + * %% + * Copyright (C) 2011 - 2012 Ifremer, Codelutin + * %% + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public + * License along with this program. If not, see + * <http://www.gnu.org/licenses/gpl-3.0.html>. + * #L% + */ Date date = context.getSimulationControl().getDate() ; Population pop = group.getPopulation() ; String name = "matrixCatchWeightPerStrategyMetPerZonePop" ; Modified: trunk/src/site/rst/contact.rst =================================================================== --- trunk/src/site/rst/contact.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/contact.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -1,7 +1,7 @@ .. - .. * #%L .. * IsisFish -.. * +.. * .. * $Id$ .. * $HeadURL$ .. * %% @@ -9,17 +9,17 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. -.. * +.. * .. * This program is distributed in the hope that it will be useful, .. * but WITHOUT ANY WARRANTY; without even the implied warranty of .. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the .. * GNU General Public License for more details. -.. * -.. * You should have received a copy of the GNU General Public +.. * +.. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -100,4 +100,4 @@ .. _Roadmap: http://forge.codelutin.com/projects/isis-fish/roadmap .. _isis-fish-devel(a)list.isis-fish.org: http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-devel .. _isis-fish-bugreport(a)list.isis-fish.org: http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-bugreport -.. _isis-fish-commits(a)list.isis-fish.org: http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-commits \ No newline at end of file +.. _isis-fish-commits(a)list.isis-fish.org: http://list.isis-fish.org/cgi-bin/mailman/listinfo/isis-fish-commits Modified: trunk/src/site/rst/download.rst =================================================================== --- trunk/src/site/rst/download.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/download.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -57,12 +57,6 @@ .. _Base BoB Anchovy: downloads/DataBaseAnchovyBoBHindcast_commented.zip -Base Pelagic fishery of the Bay of Biscay ------------------------------------------ -`Base Pelagic BoB`_ -.. _Base BoB Anchovy: - - ISIS-Fish (Version R) --------------------- Modified: trunk/src/site/rst/history/changelog.rst =================================================================== --- trunk/src/site/rst/history/changelog.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/history/changelog.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/history/history.rst =================================================================== --- trunk/src/site/rst/history/history.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/history/history.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/history.rst =================================================================== --- trunk/src/site/rst/history.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/history.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -45,4 +45,4 @@ .. _Version 1: v1/changelog.html .. _Version 2: v2/index.html .. _Version 3: v3/index.html - \ No newline at end of file + Modified: trunk/src/site/rst/index.rst =================================================================== --- trunk/src/site/rst/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/license.rst =================================================================== --- trunk/src/site/rst/license.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/license.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -1,25 +1,25 @@ .. - .. * #%L .. * IsisFish -.. * +.. * .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. -.. * +.. * .. * This program is distributed in the hope that it will be useful, .. * but WITHOUT ANY WARRANTY; without even the implied warranty of .. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the .. * GNU General Public License for more details. -.. * -.. * You should have received a copy of the GNU General Public +.. * +.. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -28,283 +28,677 @@ :: - GNU GENERAL PUBLIC LICENSE - Version 2, June 1991 - -Copyright (C) 1989, 1991 Free Software Foundation, Inc., -51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA -Everyone is permitted to copy and distribute verbatim copies -of this license document, but changing it is not allowed. - - Preamble - -The licenses for most software are designed to take away your -freedom to share and change it. By contrast, the GNU General Public -License is intended to guarantee your freedom to share and change free -software--to make sure the software is free for all its users. This -General Public License applies to most of the Free Software -Foundation's software and to any other program whose authors commit to -using it. (Some other Free Software Foundation software is covered by -the GNU Lesser General Public License instead.) You can apply it to -your programs, too. - -When we speak of free software, we are referring to freedom, not -price. Our General Public Licenses are designed to make sure that you -have the freedom to distribute copies of free software (and charge for -this service if you wish), that you receive source code or can get it -if you want it, that you can change the software or use pieces of it -in new free programs; and that you know you can do these things. - -To protect your rights, we need to make restrictions that forbid -anyone to deny you these rights or to ask you to surrender the rights. -These restrictions translate to certain responsibilities for you if you -distribute copies of the software, or if you modify it. - -For example, if you distribute copies of such a program, whether -gratis or for a fee, you must give the recipients all the rights that -you have. You must make sure that they, too, receive or can get the -source code. And you must show them these terms so they know their -rights. - -We protect your rights with two steps: (1) copyright the software, and -(2) offer you this license which gives you legal permission to copy, -distribute and/or modify the software. - -Also, for each author's protection and ours, we want to make certain -that everyone understands that there is no warranty for this free -software. If the software is modified by someone else and passed on, we -want its recipients to know that what they have is not the original, so -that any problems introduced by others will not reflect on the original -authors' reputations. - -Finally, any free program is threatened constantly by software -patents. We wish to avoid the danger that redistributors of a free -program will individually obtain patent licenses, in effect making the -program proprietary. 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No Surrender of Others' Freedom. + + If conditions are imposed on you (whether by court order, agreement or + otherwise) that contradict the conditions of this License, they do not + excuse you from the conditions of this License. If you cannot convey a + covered work so as to satisfy simultaneously your obligations under this + License and any other pertinent obligations, then as a consequence you may + not convey it at all. For example, if you agree to terms that obligate you + to collect a royalty for further conveying from those to whom you convey + the Program, the only way you could satisfy both those terms and this + License would be to refrain entirely from conveying the Program. + + 13. 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Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided + above cannot be given local legal effect according to their terms, + reviewing courts shall apply local law that most closely approximates + an absolute waiver of all civil liability in connection with the + Program, unless a warranty or assumption of liability accompanies a + copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest + possible use to the public, the best way to achieve this is to make it + free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. It is safest + to attach them to the start of each source file to most effectively + state the exclusion of warranty; and each file should have at least + the "copyright" line and a pointer to where the full notice is found. + + <one line to give the program's name and a brief idea of what it does.> + Copyright (C) <year> <name of author> + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + + Also add information on how to contact you by electronic and paper mail. + + If the program does terminal interaction, make it output a short + notice like this when it starts in an interactive mode: + + <program> Copyright (C) <year> <name of author> + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + + The hypothetical commands `show w' and `show c' should show the appropriate + parts of the General Public License. Of course, your program's commands + might be different; for a GUI interface, you would use an "about box". + + You should also get your employer (if you work as a programmer) or school, + if any, to sign a "copyright disclaimer" for the program, if necessary. + For more information on this, and how to apply and follow the GNU GPL, see + <http://www.gnu.org/licenses/>. + + The GNU General Public License does not permit incorporating your program + into proprietary programs. If your program is a subroutine library, you + may consider it more useful to permit linking proprietary applications with + the library. If this is what you want to do, use the GNU Lesser General + Public License instead of this License. But first, please read + <http://www.gnu.org/philosophy/why-not-lgpl.html>. Modified: trunk/src/site/rst/listStats.rst =================================================================== --- trunk/src/site/rst/listStats.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/listStats.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -102,4 +102,4 @@ * 2008: 2479 * 2009: 4348 -Total : 12009 \ No newline at end of file +Total : 12009 Modified: trunk/src/site/rst/news.rst =================================================================== --- trunk/src/site/rst/news.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/news.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -31,7 +31,7 @@ 2012 ---- -- ** *6-7 décembre 2012* : Séminaire Utilisateurs ISIS-Fish - Nantes, FRANCE, INSCRIPTION_ ** +- ***6-7 décembre 2012* : Séminaire Utilisateurs ISIS-Fish - Nantes, FRANCE, INSCRIPTION_** - *17-21 septembre 212* : `Conference annuelle du CIEM - Bergen`_ , Norvège - *4-8 juin 2012* : `Ecole Chercheur 2012`_ Analyse de sensibilité, Atelier ISIS-Fish (Lyon) - *23-26 avril 2012* : Participation à la réunion de démarrage du projet européen MYFISH_ , Vigo ESPAGNE @@ -84,4 +84,4 @@ .. _Conference annuelle du CIEM - Halifax: http://www.ices.dk/iceswork/asc/2008/index.asp .. _Groupe de travail CIEM: http://www.ices.dk/workinggroups/ViewWorkingGroup.aspx?ID=345 .. _Mexico: http://reseau-mexico.fr/welcome -.. _Forum Halieumétrique 2011: http://halieutique.agrocampus-ouest.fr/afh/index.html \ No newline at end of file +.. _Forum Halieumétrique 2011: http://halieutique.agrocampus-ouest.fr/afh/index.html Modified: trunk/src/site/rst/othertools.rst =================================================================== --- trunk/src/site/rst/othertools.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/othertools.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -43,4 +43,4 @@ .. _Utilisation-Installation de Netbeans: tools/netbeans.html .. _Eclipse: http://www.eclipse.org .. _Netbeans: http://www.netbeans.org/ -.. _Notepad++: http://notepad-plus-plus.org/download/ \ No newline at end of file +.. _Notepad++: http://notepad-plus-plus.org/download/ Modified: trunk/src/site/rst/presentation.rst =================================================================== --- trunk/src/site/rst/presentation.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/presentation.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -51,4 +51,4 @@ * Irin (Institut de Recherche en Informatique de Nantes) * Cogitec ( http://www.cogitec.fr ) - * Code Lutin ( http://www.codelutin.com ) \ No newline at end of file + * Code Lutin ( http://www.codelutin.com ) Modified: trunk/src/site/rst/publications.rst =================================================================== --- trunk/src/site/rst/publications.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/publications.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -32,16 +32,16 @@ ===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== Année Publication Téléchargement Publication originale ===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== -2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant, 2011. 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part2: Sensitivity analysis and management measures.' **Fisheries Research** 108, Issue 1, Pages 174-183 `Ici <https://w3.ifremer.fr/archimer/doc/00030/14115/11337.pdf>`_ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ -2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant (2011) 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part1: Parameterization and simulations.' **Fisheries Research** 108, Issue 1, Pages 163-173 `Ici <https://w3.ifremer.fr/archimer/doc/00030/14114/11351.pdf>`_ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ -2011 **Marchal, P.**, Little, L.R., and Thébaud, O., 2011. 'Quota allocation in mixed-fisheries: a bioeconomic modelling approach applied to the Channel flatfish fisheries.' **ICES Journal of Marine Science**, 68, 1580–1591. `Ici <https://w3.ifremer.fr/archimer/doc/00044/15492/12971.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ -2010 **Lehuta, S.**, Mahévas, S., Petitgas, P. et Pelletier, D., 2010. 'Combining sensitivity and uncertainty analysis to evaluate the impact of management measures with ISIS–Fish: marine protected areas for the Bay of Biscay anchovy(Engraulis encrasicolus) ﬁshery. **ICES journal of Marine science** 67:1063-1075. `Ici <http://archimer.ifremer.fr/doc/00011/12234/9281.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ -2009 **Marchal, P.**, Francis, C., Lallemand, P., Lehuta, S., Mahévas, S., Stokes, K. & Vermard,Y., 2009. 'Catch-quota balancing in mixed-fisheries: a bio-economic modelling approach applied to the New Zealand hoki (Macruronus novaezelandiae) fishery' . **Aquatic Living Resource** 22:483-498. `Ici <http://archimer.ifremer.fr/doc/00000/11168/7521.pdf>`_ `ALR <http://www.alr-journal.org/>`_ -2009 **Pelletier, D.** , Mahévas, S., Drouineau, H., Vermard, Y., Thebaud, O., Guyader,O. & Poussin, B., 2009. 'Evaluation of the bioeconomic sustainability of multi-species multi-fleet fisheries under a wide range of policy options using ISIS-Fish.' **Ecological Modelling** 220 (7): pp. 1013-1033. `Ici <http://archimer.ifremer.fr/doc/2009/publication-6782.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ -2009 **Kraus, G.** , Pelletier, D., Dubreuil, J., Moellmann, C., Hinrichsen, H., Bastardie, F., Vermard,Y. & Mahévas, S., 2009. 'A model-based evaluation of Marine Protected Areas as fishery management tool for a stock facing strong environmental variability - the example of Eastern Baltic cod (Gadus morhua callarias L.).' **ICES Journal of Marine Science** 66: pp. 109-121. `Ici <http://archimer.ifremer.fr/doc/2009/publication-6094.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ -2006 **Drouineau, H.** , S. Mahévas, D. Pelletier, B. Beliaeff. 'Assessing the impact of different management options using ISIS-Fish: the French Merluccius merluccius – Nephrops norvegicus mixed fishery of the Bay of Biscay.' **Aquat. Living Resour.** 19, 15–29 `Ici <http://archimer.ifremer.fr/doc/2006/publication-1340.pdf>`_ `ALR <http://www.alr-journal.org/>`_ -2005 **Pelletier, D.** & S. Mahévas. 'Fisheries simulation models for evaluating the impact of management policies, with emphasis on marine protected areas.' **Fish and Fisheries** ; 6 (4) : 307-349. `Ici <http://archimer.ifremer.fr/doc/2005/publication-1031.pdf>`_ `Fish and Fisheries <http://www.blackwellpublishing.com/>`_ -2004 **Mahévas, S.** & D. Pelletier, 2004. 'ISIS-Fish, a generic and spatially-explicit simulation tool for evaluating the impact of management measures on fisheries dynamics.' **Ecological Modelling** 171, 65-84. `Ici <http://archimer.ifremer.fr/doc/2004/publication-1133.pdf>`_ `sciencedirect <http://www.sciencedirect.com/>`_ +2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant, 2011. 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part2: Sensitivity analysis and management measures.' **Fisheries Research** 108, Issue 1, Pages 174-183 `Ici <https://w3.ifremer.fr/archimer/doc/00030/14115/11337.pdf>`__ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ +2011 **Hussein, C.**, M.Verdoit-Jarraya, J.Pastor, A.Ibrahim, G.Saragoni, D.Pelletier, S. Mahévas, P.Lenfant (2011) 'Assessing the impact of artisanal and recreational fishing and protection on a white seabream (Diplodus sargussargus) population in the north-western Mediterranean Sea using a simulation model. Part1: Parameterization and simulations.' **Fisheries Research** 108, Issue 1, Pages 163-173 `Ici <https://w3.ifremer.fr/archimer/doc/00030/14114/11351.pdf>`__ `Fisheries research <http://www.journals.elsevier.com/fisheries-research/>`_ +2011 **Marchal, P.**, Little, L.R., and Thébaud, O., 2011. 'Quota allocation in mixed-fisheries: a bioeconomic modelling approach applied to the Channel flatfish fisheries.' **ICES Journal of Marine Science**, 68, 1580–1591. `Ici <https://w3.ifremer.fr/archimer/doc/00044/15492/12971.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ +2010 **Lehuta, S.**, Mahévas, S., Petitgas, P. et Pelletier, D., 2010. 'Combining sensitivity and uncertainty analysis to evaluate the impact of management measures with ISIS–Fish: marine protected areas for the Bay of Biscay anchovy(Engraulis encrasicolus) ﬁshery. **ICES journal of Marine science** 67:1063-1075. `Ici <http://archimer.ifremer.fr/doc/00011/12234/9281.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ +2009 **Marchal, P.**, Francis, C., Lallemand, P., Lehuta, S., Mahévas, S., Stokes, K. & Vermard,Y., 2009. 'Catch-quota balancing in mixed-fisheries: a bio-economic modelling approach applied to the New Zealand hoki (Macruronus novaezelandiae) fishery' . **Aquatic Living Resource** 22:483-498. `Ici <http://archimer.ifremer.fr/doc/00000/11168/7521.pdf>`__ `ALR <http://www.alr-journal.org/>`_ +2009 **Pelletier, D.** , Mahévas, S., Drouineau, H., Vermard, Y., Thebaud, O., Guyader,O. & Poussin, B., 2009. 'Evaluation of the bioeconomic sustainability of multi-species multi-fleet fisheries under a wide range of policy options using ISIS-Fish.' **Ecological Modelling** 220 (7): pp. 1013-1033. `Ici <http://archimer.ifremer.fr/doc/2009/publication-6782.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ +2009 **Kraus, G.** , Pelletier, D., Dubreuil, J., Moellmann, C., Hinrichsen, H., Bastardie, F., Vermard,Y. & Mahévas, S., 2009. 'A model-based evaluation of Marine Protected Areas as fishery management tool for a stock facing strong environmental variability - the example of Eastern Baltic cod (Gadus morhua callarias L.).' **ICES Journal of Marine Science** 66: pp. 109-121. `Ici <http://archimer.ifremer.fr/doc/2009/publication-6094.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ +2006 **Drouineau, H.** , S. Mahévas, D. Pelletier, B. Beliaeff. 'Assessing the impact of different management options using ISIS-Fish: the French Merluccius merluccius – Nephrops norvegicus mixed fishery of the Bay of Biscay.' **Aquat. Living Resour.** 19, 15–29 `Ici <http://archimer.ifremer.fr/doc/2006/publication-1340.pdf>`__ `ALR <http://www.alr-journal.org/>`_ +2005 **Pelletier, D.** & S. Mahévas. 'Fisheries simulation models for evaluating the impact of management policies, with emphasis on marine protected areas.' **Fish and Fisheries** ; 6 (4) : 307-349. `Ici <http://archimer.ifremer.fr/doc/2005/publication-1031.pdf>`__ `Fish and Fisheries <http://www.blackwellpublishing.com/>`_ +2004 **Mahévas, S.** & D. Pelletier, 2004. 'ISIS-Fish, a generic and spatially-explicit simulation tool for evaluating the impact of management measures on fisheries dynamics.' **Ecological Modelling** 171, 65-84. `Ici <http://archimer.ifremer.fr/doc/2004/publication-1133.pdf>`__ `sciencedirect <http://www.sciencedirect.com/>`_ 2001 **Pelletier, D.** , S. Mahévas, B. Poussin, J. Bayon, P. André and J.C. Royer. 2001. 'A conceptual model for evaluating the impact of spatial management measures on the dynamics of a mixed fishery', pp. 53-66 In : G. H. Kruse, N. Bez, T. Booth, M. Dorn, S. Hills, R. Lipcius, D. Pelletier, C. Roy, S. Smith, & D. Witherell (eds), Spatial Processes and Management of Marine Populations. University of Alaska Sea Grant, AK-SG-00-04, Fairbanks ===== ======================================================================================================================================================================================================================================================================================================================================================================================================================================================== ============================================================================================== =========================================================== @@ -124,9 +124,9 @@ Période Etudiant Ecole Doctorale Titre Téléchargement ========= ========================== =========================================================================================== ================================================================================================================================================================================================= ============================================================= 2011 Hussein Chirine École Pratique des Hautes Études, Mention Systèmes Intégrés, Environnement et Biodiversité. Modélisation de l’impact de la pêche et de la protection sur une ressource exploitée : le sar commun, Diplodus sargus sargus (L., 1758) autour de la réserve naturelle marine de Cerbère-Banyuls. -2007-2010 Lehuta Sigrid « Vie, Agro, Santé » (VAS) Développement d’indicateurs de pêcheries pour évaluer l’impact de mesures de gestion. `Ici <http://archimer.ifremer.fr/doc/00025/13630/10712.pdf>`_ -2006-2009 Vermard Youen « Vie, Agro, Santé » (VAS) La compréhension des dynamiques de flottille permet-elle d'améliorer les scénarios de gestion ? `Ici <http://archimer.ifremer.fr/doc/00001/11256/7799.pdf>`_ -2004-2007 Drouineau Hilaire « Vie, Agro, Santé » (VAS) Le développement d’un modèle de dynamique de population structuré en longueur et spatialisé – application au Merlu (Merluccius merluccius) d’Atlantique Nord-Est. `Ici <http://archimer.ifremer.fr/doc/2008/these-3710.pdf>`_ +2007-2010 Lehuta Sigrid « Vie, Agro, Santé » (VAS) Développement d’indicateurs de pêcheries pour évaluer l’impact de mesures de gestion. `Ici <http://archimer.ifremer.fr/doc/00025/13630/10712.pdf>`__ +2006-2009 Vermard Youen « Vie, Agro, Santé » (VAS) La compréhension des dynamiques de flottille permet-elle d'améliorer les scénarios de gestion ? `Ici <http://archimer.ifremer.fr/doc/00001/11256/7799.pdf>`__ +2004-2007 Drouineau Hilaire « Vie, Agro, Santé » (VAS) Le développement d’un modèle de dynamique de population structuré en longueur et spatialisé – application au Merlu (Merluccius merluccius) d’Atlantique Nord-Est. `Ici <http://archimer.ifremer.fr/doc/2008/these-3710.pdf>`__ ========= ========================== =========================================================================================== ================================================================================================================================================================================================= ============================================================= Post-doctorats Modified: trunk/src/site/rst/research.rst =================================================================== --- trunk/src/site/rst/research.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/research.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/tools/eclipse.rst =================================================================== --- trunk/src/site/rst/tools/eclipse.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/tools/eclipse.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -115,4 +115,4 @@ Maintenant cliqué sur Debug en bas de la fenêtre, Eclipse doit se connecter à Isis. Il vous faut maintenant poser des points d'arret dans votre code pour qu'Eclipse arrete l'execution et que vous puissiez faire du pas a pas à -partir de ces lignes. \ No newline at end of file +partir de ces lignes. Modified: trunk/src/site/rst/tools/netbeans.rst =================================================================== --- trunk/src/site/rst/tools/netbeans.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/tools/netbeans.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v1/changelog.rst =================================================================== --- trunk/src/site/rst/v1/changelog.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v1/changelog.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v2/changelog.rst =================================================================== --- trunk/src/site/rst/v2/changelog.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/changelog.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v2/devel/index.rst =================================================================== --- trunk/src/site/rst/v2/devel/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/devel/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v2/index.rst =================================================================== --- trunk/src/site/rst/v2/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -240,4 +240,4 @@ * dans le tableau de population les longueurs min et max sont affichées si les classes sont en longueur * correction d'une erreur lors de la creation de la matrice de changement de classe pour une population en longueur n'ayant qu'un secteur de pop * amelioration du fichier java web start pour permettre d'avoir l'aide avec le javahelp - * amelioration du jar standalone pour avoir l'aide dedans \ No newline at end of file + * amelioration du jar standalone pour avoir l'aide dedans Modified: trunk/src/site/rst/v2/user/ECMAScript.rst =================================================================== --- trunk/src/site/rst/v2/user/ECMAScript.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/user/ECMAScript.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v2/user/ECMAScriptEdit.rst =================================================================== --- trunk/src/site/rst/v2/user/ECMAScriptEdit.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/user/ECMAScriptEdit.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v2/user/FAQ.rst =================================================================== --- trunk/src/site/rst/v2/user/FAQ.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/user/FAQ.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v2/user/Rules.rst =================================================================== --- trunk/src/site/rst/v2/user/Rules.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/user/Rules.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v2/user/ScriptHilaire.rst =================================================================== --- trunk/src/site/rst/v2/user/ScriptHilaire.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/user/ScriptHilaire.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -107,7 +107,7 @@ Opérations mathématiques et concaténations ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -Les opérations mathématiques classiques telles que +, -, *, / sont définies sur +Les opérations mathématiques classiques telles que +, -, \*, / sont définies sur les variables numériques, ainsi que l'opérateur % qui donne le reste de la division euclidienne @@ -128,7 +128,7 @@ a++; //a vaut 3 a--; //a vaut 2 -+= , -= , /= et *= prend la valeur de gauche y additionne (ou soustrait, ou ++= , -= , /= et \*= prend la valeur de gauche y additionne (ou soustrait, ou divise ou multiplie) la valeur de droite et affecte le résultat à la variable de gauche. Modified: trunk/src/site/rst/v2/user/SimulationLauncher.rst =================================================================== --- trunk/src/site/rst/v2/user/SimulationLauncher.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/user/SimulationLauncher.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v2/user/index.rst =================================================================== --- trunk/src/site/rst/v2/user/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v2/user/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/changeVersion.rst =================================================================== --- trunk/src/site/rst/v3/changeVersion.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/changeVersion.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -51,7 +51,7 @@ - fermez maintenant IsisFish-3.1.3 - renommez le dossier "isis-database-3" en "isis-database-3.1.3" (ce dossier est normalement situe dans votre repertoire - utilisateur, sous windows C:\Documents and settings\<user>\) + utilisateur, sous windows C:\Documents and settings\<user>\) Telechargement de la nouvelle version @@ -121,6 +121,6 @@ En particulier : - le manuel : -http://isis-fish.labs.libre-entreprise.org/wiki-moin/instance/cgi-bin/moin.cgi/v3/usermanual + http://isis-fish.labs.libre-entreprise.org/wiki-moin/instance/cgi-bin/moin.… - les changements : -http://isis-fish.labs.libre-entreprise.org/wiki-moin/instance/cgi-bin/moin.cgi/v3/news \ No newline at end of file + http://isis-fish.labs.libre-entreprise.org/wiki-moin/instance/cgi-bin/moin.… Modified: trunk/src/site/rst/v3/changelog.rst =================================================================== --- trunk/src/site/rst/v3/changelog.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/changelog.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/devel/SyntaxeOption.rst =================================================================== --- trunk/src/site/rst/v3/devel/SyntaxeOption.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/devel/SyntaxeOption.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id: SyntaxeOption.rst 3124 2010-11-29 18:14:09Z chatellier $ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -46,7 +46,7 @@ # groupement d'arguments facultatifs balisé par [ ] # groupement d'arguments obligatoires balisé par < > -Les arguments à l'intérieur d'un groupement sont séparés par des |, cela veut +Les arguments à l'intérieur d'un groupement sont séparés par des \|, cela veut dire que pour un groupement donné, un seul de ses arguments doit être trouvé dans une ligne de commande. @@ -241,4 +241,4 @@ listSimulation(--listSimulation, -l) list all simulation available localy resetConfig(--resetConfig) Reset user configuration ui(--ui) not launch user interface [true|false] -ssh-key-file(--ssh-key-file, -k) change private ssh key file path \ No newline at end of file +ssh-key-file(--ssh-key-file, -k) change private ssh key file path Modified: trunk/src/site/rst/v3/devel/index.rst =================================================================== --- trunk/src/site/rst/v3/devel/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/devel/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/devel/isis-architecture.rst =================================================================== --- trunk/src/site/rst/v3/devel/isis-architecture.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/devel/isis-architecture.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/devel/usbkey.rst =================================================================== --- trunk/src/site/rst/v3/devel/usbkey.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/devel/usbkey.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -54,4 +54,4 @@ vcs.protocol=svn vcs.username=anonymous compilation.directory=isis-build - monitoring.directory=isis-monitoring \ No newline at end of file + monitoring.directory=isis-monitoring Modified: trunk/src/site/rst/v3/index.rst =================================================================== --- trunk/src/site/rst/v3/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/AnalysePlan.rst =================================================================== --- trunk/src/site/rst/v3/user/AnalysePlan.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/AnalysePlan.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/ExternalScriptEditor.rst =================================================================== --- trunk/src/site/rst/v3/user/ExternalScriptEditor.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/ExternalScriptEditor.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/FAQ.rst =================================================================== --- trunk/src/site/rst/v3/user/FAQ.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/FAQ.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/Historique.rst =================================================================== --- trunk/src/site/rst/v3/user/Historique.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/Historique.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/Installation.rst =================================================================== --- trunk/src/site/rst/v3/user/Installation.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/Installation.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/Introduction.rst =================================================================== --- trunk/src/site/rst/v3/user/Introduction.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/Introduction.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/LaunchOption.rst =================================================================== --- trunk/src/site/rst/v3/user/LaunchOption.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/LaunchOption.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id: LaunchOption.rst 3508 2011-10-28 14:27:34Z echatellier $ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -64,7 +64,7 @@ '*' indique de mettre tous les éléments de ce type. Pour les formules il faut mettre devant le nom le type de la formule, par -exemple: 'Growth/TheGrowth' ou 'NaturalDeathRate/*' +exemple: 'Growth/TheGrowth' ou 'NaturalDeathRate/\*' Action sur le repository local ------------------------------ Modified: trunk/src/site/rst/v3/user/UserInterface.rst =================================================================== --- trunk/src/site/rst/v3/user/UserInterface.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/UserInterface.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/addSshKey.rst =================================================================== --- trunk/src/site/rst/v3/user/addSshKey.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/addSshKey.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/index.rst =================================================================== --- trunk/src/site/rst/v3/user/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/inputs.rst =================================================================== --- trunk/src/site/rst/v3/user/inputs.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/inputs.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id: inputs.rst 3124 2010-11-29 18:14:09Z chatellier $ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -230,32 +230,32 @@ étendue de chaque maille en longitude (valeur réelle) #. liste des cartes : TODO #. **ajouter une carte** : - Si vous désirez changer la carte par défaut pour une carte plus - précise, cliquez sur Ajouter carte et sélectionnez la carte à - ajouter grâce au menu défilant. - Il n'est nécessaire que d'ajouter la carte au format shp mais par - contre les deux cartes shp et ssx doivent être situées dans le - même dossier + Si vous désirez changer la carte par défaut pour une carte plus + précise, cliquez sur Ajouter carte et sélectionnez la carte à + ajouter grâce au menu défilant. + Il n'est nécessaire que d'ajouter la carte au format shp mais par + contre les deux cartes shp et ssx doivent être situées dans le + même dossier #. **supprimer la carte** : - Pour supprimer une carte précdemment ajoutée. + Pour supprimer une carte précdemment ajoutée. #. **commentaires** : - Des informations complémentaires sur la région peuvent être ajoutées - grâce aux encadrés **Commentaires**. Elles seront sauvegarder en même temps - que la region. + Des informations complémentaires sur la région peuvent être ajoutées + grâce aux encadrés **Commentaires**. Elles seront sauvegarder en même temps + que la region. #. **ajouter un fichier de mailles** : - Un fichier contenant des mailles prédéfinies peut aussi être chargé. - Cliquez sur **...*** + Un fichier contenant des mailles prédéfinies peut aussi être chargé. + Cliquez sur **...*** #. **sauver** la région : - Une fois que les frontières de la région ont été définies (la carte - et le fichier de mailles prédéfinies ajoutées si nécessaire), cliquez - sur **sauver**. + Une fois que les frontières de la région ont été définies (la carte + et le fichier de mailles prédéfinies ajoutées si nécessaire), cliquez + sur **sauver**. #. **annuler** : Pour annuler les modifications efféctuées et revenir à la dernière version enregistrée. #. **vérifier** : Pour vérifier la cohérence de la pêcherie. #. **continuer** vers les **mailles** : - A la fin de ce stade, la région ainsi qu'une grille de mailles ont été crées. + A la fin de ce stade, la région ainsi qu'une grille de mailles ont été crées. Afin de continuer la paramétrisation, cliquez sur ** Continuer vers les mailles ** ou sélectionner l'onglet ** Mailles ** dans le menu de gauche. @@ -270,12 +270,12 @@ en cochant la case **Terre**. #. **maille** dans la navigation : - On peut sélectionner une maille à partir de cette zone. Les autres zones - seront alors mises à jour avec les données de cette maille. + On peut sélectionner une maille à partir de cette zone. Les autres zones + seront alors mises à jour avec les données de cette maille. #. **maille** dans liste : - On peut sélectionner une maille à partir de cette liste déroulante des noms - des mailles de la région. Les autres zones seront alors mises à jour avec les - données de cette maille. + On peut sélectionner une maille à partir de cette liste déroulante des noms + des mailles de la région. Les autres zones seront alors mises à jour avec les + données de cette maille. #. **maille** dans carte : On peut enfin sélectionner une maille en la sélectionnant sur la carte. Les autres zones seront alors mises à jour avec les données de cette maille. @@ -876,19 +876,19 @@ d'édition. Chaque commentaire est lié à une population, il est ainsi possible d'ajouter un commentaire pour chaque population préalablement définie. #. **save as model** pour équation de reproduction : - pour sauver une équation de type reproduction dans les scripts d'IsisFish (formules/reproduction TODO) - Si la fonction créée peut a priori être réutilisée pour d'autres population - il peut être utile de la sauver comme modèle en utilisant ce bouton. + pour sauver une équation de type reproduction dans les scripts d'IsisFish (formules/reproduction TODO) + Si la fonction créée peut a priori être réutilisée pour d'autres population + il peut être utile de la sauver comme modèle en utilisant ce bouton. #. **open editor** pour équation de reproduction - pour ouvrir l'éditeur d'équation de reproduction (voir figure - input_XX_equationReproduction). + pour ouvrir l'éditeur d'équation de reproduction (voir figure + input_XX_equationReproduction). #. **sauver** - sauver les modifications effectuées. + sauver les modifications effectuées. #. **annuler** - annuler les modifications effectuées et revenir à la dernière version - sauvegardée.. + annuler les modifications effectuées et revenir à la dernière version + sauvegardée.. -remarque : Si la seule relation disponible est une relation Stock/Recrutement, +Remarque : Si la seule relation disponible est une relation Stock/Recrutement, il suffit de saisir cette relation dans l'équation de reproduction et de mettre la mortalité naturelle de la classe naissance ainsi que le nombre de mois entre la reproduction et le recrutement à zéro. @@ -953,10 +953,10 @@ d'édition. Chaque commentaire est lié à une population, il est ainsi possible d'ajouter un commentaire pour chaque population préalablement définie. #. **sauver** : - sauver les modifications. + sauver les modifications. #. **annuler** : - annuler les modifications effectuées et revenir à la dernière version - enregistrée.. + annuler les modifications effectuées et revenir à la dernière version + enregistrée.. Remarque : Il n'y a pas de test sur les valeurs saisies, faire attention à saisir un coefficient pour les migrations et les émigrations et un nombre pour @@ -996,10 +996,10 @@ d'édition. Chaque commentaire est lié à une population, il est ainsi possible d'ajouter un commentaire pour chaque population préalablement définie. #. **sauver** : - sauver les modifications sur les émigrations. + sauver les modifications sur les émigrations. #. **annuler** : - annuler les modifications effectuées et revenir à la dernière version - enregistrée. + annuler les modifications effectuées et revenir à la dernière version + enregistrée. onglet **Saisie des migrations de populations** (Immigration) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1034,10 +1034,10 @@ d'édition. Chaque commentaire est lié à une population, il est ainsi possible d'ajouter un commentaire pour chaque population préalablement définie. #. **sauver** : - sauver les modifications sur les immigrations. + sauver les modifications sur les immigrations. #. **annuler** : - annuler les modifications effectuées et revenir à la dernière version - enregistrée. + annuler les modifications effectuées et revenir à la dernière version + enregistrée. onglet **Saisie des migrations de populations** (par équation) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1098,7 +1098,7 @@ #. **caractéristiques** : pour renseigner les caratéristiques générales de l'engin. #. **sélectivité** : pour renseigner les caractéristisques de sélectivité de - l'engin (assocation equation de sélectivite - pouplation). + l'engin (assocation equation de sélectivite - pouplation). **caractéristiques d'un engin** ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1133,17 +1133,17 @@ Pour permettre de saisir des commentaires propres à cet engin. Ils seront sauvegarder en base lors de la sauvegarde de l'engin. #. **sauver** : - sauver les modifications apportés sur l'engin. + sauver les modifications apportés sur l'engin. #. **annuler** : - annuler les modifications effectuées depuis la dernière suavegarde. + annuler les modifications effectuées depuis la dernière suavegarde. #. **supprimer** : - pour supprimer un engin de la pêcherie. Attention cette opération est - irréversible, une fois supprimé, l'engin n'est pas récupérable. + pour supprimer un engin de la pêcherie. Attention cette opération est + irréversible, une fois supprimé, l'engin n'est pas récupérable. #. **engins dans la navigation** : - positionnement de l'engin dans les objets de la pêcherie. + positionnement de l'engin dans les objets de la pêcherie. #. **continuer** vers les métiers : - Une fois le paramétrage de l'engin terminé, continuer vers la prochaine étape - de la configuration de la pêcherie : les métiers. + Une fois le paramétrage de l'engin terminé, continuer vers la prochaine étape + de la configuration de la pêcherie : les métiers. **sélectivité** ~~~~~~~~~~~~~~~ @@ -1176,17 +1176,17 @@ #. **ajouter** : Permet d'ajouter une asosciation équation de sélectivité - population. #. **liste ajoutés** : - On retrouve ici l'ensemble des associations équations de sélectivité - pouplation - ajoutés dans la pêcherie pour cet engin. + On retrouve ici l'ensemble des associations équations de sélectivité - pouplation + ajoutés dans la pêcherie pour cet engin. #. **supprimer** : - Pour supprimer une asosciation équation de sélectivité- population - précédemment ajouté à l'engin. + Pour supprimer une asosciation équation de sélectivité- population + précédemment ajouté à l'engin. #. **sauver** : - sauver les modifications. + sauver les modifications. #. **annuler** : - annuler les modifications effectuées. + annuler les modifications effectuées. #. **engins dans la navigation** : - position de l'engin dans l'arborescence de naivgation des objets de la pêcherie. + position de l'engin dans l'arborescence de naivgation des objets de la pêcherie. #. **continuer** vers les métiers Une fois le paramétrage de l'engin terminé, continuer vers la prochaine étape de la configuration de la pêcherie : les métiers. @@ -1195,6 +1195,7 @@ ========================= Trois différentes feuilles de saisie sont disponibles afin de décrire les métiers: + #. **caractéristiques** : où le métier est décrit. #. **Saison-Zones** : où les saisons où sont spécifiées les saisons et zones correspondant à la description du métier. @@ -1224,17 +1225,17 @@ Chaque commentaire est lié à un métier, il est ainsi possible d'ajouter un commentaire pour chaque métier préalablement défini. #. **sauver** : - Pour sauvegarder ce métier en base. -#. **annuler ** : - Pour annuler toutes les modifications et revenir à la dernière sauvegarde. + Pour sauvegarder ce métier en base. +#. **annuler** : + Pour annuler toutes les modifications et revenir à la dernière sauvegarde. #. **supprimer** : - Permet de supprimer un métrier de la pêcherie. Attention cette opération est - irréversible, une fois le métier supprimé, il ne sera plus récupérable. + Permet de supprimer un métrier de la pêcherie. Attention cette opération est + irréversible, une fois le métier supprimé, il ne sera plus récupérable. #. **métier** dans la zone de navigation : - Positionnement du métier dans la navigation des objets de la pêcherie. + Positionnement du métier dans la navigation des objets de la pêcherie. #. **continuer** vers les types de trajets : - Une fois terminée la configuration des métiers, on passe à la prochaine étape - de la saisie, à savoir configuration des types de trajets (ou marées). + Une fois terminée la configuration des métiers, on passe à la prochaine étape + de la saisie, à savoir configuration des types de trajets (ou marées). **Saison - zones** @@ -1243,37 +1244,37 @@ .. image:: images/input_24_inputMetiersSeasonZone.png #. **nouveau** : - Toujours commencer par ajouter un nouvelle association saison-zone. Une fois - celle-ci ajoutée, une nouvelle entrée est ajouté dans la liste de sélection - des saisons. + Toujours commencer par ajouter un nouvelle association saison-zone. Une fois + celle-ci ajoutée, une nouvelle entrée est ajouté dans la liste de sélection + des saisons. #. **sélection saison** : - Dans cette liste déroulante sont représentées les associations saisons-zones - ajoutées pour ce métier. + Dans cette liste déroulante sont représentées les associations saisons-zones + ajoutées pour ce métier. #. **définition saison** : - Définir un ensemble de mois durant lesquels le métier est pratiqué en utilisant - le curseur et les cellules jaunes/bleue (jaune: le mois est inclus dans la - saison, bleu: il ne l'est pas). + Définir un ensemble de mois durant lesquels le métier est pratiqué en utilisant + le curseur et les cellules jaunes/bleue (jaune: le mois est inclus dans la + saison, bleu: il ne l'est pas). #. **zones sélectionnées** : - Dans cette liste, on retrouve l'ensemble des zones de la pêcherie. - Sélectionner les Zones dans lesquelles le métier est pratiqué pendant la - saison définie parmi les zones prédéfinies. + Dans cette liste, on retrouve l'ensemble des zones de la pêcherie. + Sélectionner les Zones dans lesquelles le métier est pratiqué pendant la + saison définie parmi les zones prédéfinies. #. **commentaires** : Des informations complémentaires peuvent être ajoutées grâce à cette zone. Chaque commentaire est lié à une saison, il est ainsi possible d'ajouter un commentaire pour chaque saison préalablement définie. #. **sauver** : - Pour sauvegarder en base, les modifications apportées à l'écran. -#. **annuler ** : - Pour annuler les modifications depuis la dernière sauvegarde. + Pour sauvegarder en base, les modifications apportées à l'écran. +#. **annuler** : + Pour annuler les modifications depuis la dernière sauvegarde. #. **supprimer** : - Permet de supprimer une association Saison-Zone pour le métier en cours de modification. - Attention, cette opération est irréversible, une fois supprimée, l'association - n'est plus récupérable. + Permet de supprimer une association Saison-Zone pour le métier en cours de modification. + Attention, cette opération est irréversible, une fois supprimée, l'association + n'est plus récupérable. #. **métier** dans la zone de navigation : - Positionnement du métier dans la navigation des objets de la pêcherie. + Positionnement du métier dans la navigation des objets de la pêcherie. #. **continuer** vers les types de trajets : - Une fois terminée la configuration des métiers, on passe à la prochaine étape - de la saisie, à savoir configuration des types de trajets (ou marées). + Une fois terminée la configuration des métiers, on passe à la prochaine étape + de la saisie, à savoir configuration des types de trajets (ou marées). **espèces capturables** ~~~~~~~~~~~~~~~~~~~~~~~ @@ -1295,33 +1296,33 @@ #. **sélection équation Facteur de ciblage** Dans cette liste déroulante, on retrouve l'ensemble des facteurs cibles. Il faut en sélectionner une. -#. **éditeur équation Facteur ** +#. **éditeur équation Facteur** Pour éditer une équation de **facteur cible** sans utiliser l'éditeur externe d'équation. -#. **sauver comme modèle ** +#. **sauver comme modèle** Permet de sauvegarder l'équation saisie dans la zone précédente en tant que modèle et la rendre ains réutilisable. -#. **ouvrir dans l'éditeur ** +#. **ouvrir dans l'éditeur** Permet d'ouvrir l'éditeur externe d'équation de facteur cible. -#. **espèce principale pour le métier ** +#. **espèce principale pour le métier** Permet de spécifier si l'espèce actuellement sélectionnée est une capture principale pour ce métier. #. **ajouter** : - Une fois sélectionnée la saison, l'espèce et le facteur cible, on appuie sur - ce bouton afin d'ajouter l'association. Elle sera alors ajoutée dans la table - juste en dessous. + Une fois sélectionnée la saison, l'espèce et le facteur cible, on appuie sur + ce bouton afin d'ajouter l'association. Elle sera alors ajoutée dans la table + juste en dessous. #. **espèces ajoutées** : - On retrouve ici l'ensemble des associations ajoutées pour ce métier. - Tip : en cliquant sur la cellule facteur cible d'une des entrées l'éditeur - d'équations externe s'ouvre avec l'équation correspondante. + On retrouve ici l'ensemble des associations ajoutées pour ce métier. + Tip : en cliquant sur la cellule facteur cible d'une des entrées l'éditeur + d'équations externe s'ouvre avec l'équation correspondante. #. **sauver** : - Pour sauvegarder en base, les modifications apportés à l'écran. -#. **annuler ** : - Pour annuler les modifications depuis la dernière sauvegarde. + Pour sauvegarder en base, les modifications apportés à l'écran. +#. **annuler** : + Pour annuler les modifications depuis la dernière sauvegarde. #. **supprimer** : - Permet de supprimer une association Saison-Zone pour le métier en cours. - Attention, cette opération est irréversible, une fois supprimée, l'association - n'est plus récupérable. + Permet de supprimer une association Saison-Zone pour le métier en cours. + Attention, cette opération est irréversible, une fois supprimée, l'association + n'est plus récupérable. #. **continuer** vers les types de trajets : Une fois terminée la configuration des métiers, on passe à la prochaine étape de la saisie, à savoir configuration des types de trajets (ou marées). @@ -1345,7 +1346,7 @@ #. **durée** du trajet : Pour indiquer le nombre de jours en mer par marée. #. **temp minimal entre deux voyages** : - Pour indiquer la durée minimale entre deux voyages pour ce type de trajet. + Pour indiquer la durée minimale entre deux voyages pour ce type de trajet. #. **commentaires** : Des informations complémentaires peuvent être ajoutées grâce à cette zone. Chaque commentaire est lié à un type de marée, il est ainsi possible d'ajouter @@ -1411,6 +1412,7 @@ ============================ Deux onglets permettent de décrire les flottilles: + #. **Caractéristiques** qui permet de décrire les caractéristiques de la flottile #. **DescriptonEffortParMétier** qui permet de détailler les différents métiers possibles et les coûts associés. @@ -1466,27 +1468,27 @@ #. **ajouter** : On ajoute les différents métiers susceptibles d'être opérés lors d'une marée en sélecionnant le métier dans la liste des différents métier. -#. **opération de pêche ** : +#. **opération de pêche** : Pour définir le nombre d'opération de pêche par jour pour ce métier et cette flotille. -#. **durée de la pêche ** : +#. **durée de la pêche** : Pour définir la durée d'une opération de pêche en heure pour ce métier et cette flotille. -#. **nombre d'engins par opération ** : +#. **nombre d'engins par opération** : Pour indiquer le nombre d'engins à utiliser par opération de pêche pour ce métier et cette flotille. -#. **taille de l'équipage ** : +#. **taille de l'équipage** : Pour indiquer la taille de l'équipage d'une pêche pour ce métier et cette flotille. -#. **coût unitaire de la pêche ** : +#. **coût unitaire de la pêche** : Pour indiquer le coût unitaire de la pêche, à savoir le carburant, l'huile et glace pour un bateau de cette flotille pratiquant ce métier. -#. **salaire d'équipage fixe ** : +#. **salaire d'équipage fixe** : Pour indiquer la part fixe du salaire de l'équipage de cette flotille pratiquant ce métier (en euros par mois). -#. **coût de l'alimentation pour l'équipage ** : +#. **coût de l'alimentation pour l'équipage** : Pour indiquer le coût de l'alimentation pour l'équipage pour un bateau de cette flotille pratiquant ce métier. -#. **taux de partage de l'équipage ** : +#. **taux de partage de l'équipage** : Pour indiquer le Part variable du salaire de l'équipage pour un bateau de cette flotille pratiquant ce métier. #. **coût de maintenance de l'engin** : @@ -1496,7 +1498,7 @@ #. **coût de revient à terre** : Pour renseigner le coût de débarquement (taux) lié au métier et au port de la stratégie. -#. **autres coûts ** : +#. **autres coûts** : Pour indiquer les autres coûts d'exploitation de cette flotille pratiquant ce métier (en euros par heure). #. **sauver** : Modified: trunk/src/site/rst/v3/user/isisFishData.rst =================================================================== --- trunk/src/site/rst/v3/user/isisFishData.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/isisFishData.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/result.rst =================================================================== --- trunk/src/site/rst/v3/user/result.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/result.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id: result.rst 3124 2010-11-29 18:14:09Z chatellier $ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -54,25 +54,25 @@ .. image:: images/result_01.png #. **choix des résultats à afficher** : en sélectionnant l'un des radio boutons - on change les données de la zone centrale et sur la gauche. + on change les données de la zone centrale et sur la gauche. Par défaut, on arrive sur la page de résumé comme indiqué dans le figure ci-dessus. #. **liste déroulante des matrices à afficher**. TODO à revoir. #. **liste des exports** ce menu permet de sauvegarder un des exports de la simulation; on sélectionnant un des export, une boite de dialogue apparaît pour vous demander un chemin où sauvegarder le fichier. -#. ** liste des données de la dimension temps **, on sélectionner les tranches - qui nous interessent. -#. ** liste des données de la dimension 1**, on sélectionner les plages qui - nous interessent. -#. ** liste des données de la dimension 2**, on sélectionner les plages qui - nous interessent. +#. **liste des données de la dimension temps**, on sélectionner les tranches + qui nous interessent. +#. **liste des données de la dimension 1**, on sélectionner les plages qui + nous interessent. +#. **liste des données de la dimension 2**, on sélectionner les plages qui + nous interessent. #. **activer les ?** TODO à revoir #. **activer les ?** TODO à revoir #. **activer les ?** TODO à revoir #. **activer les ?** TODO à revoir #. Une fois tous les dimensions sélectionnées, on appuye ici pour afficher - les rapports (voir figure suivante). + les rapports (voir figure suivante). #. Le résumé de la simulation ouverte (unqiuement visible dans la vue résumé). description de la vue graphe @@ -86,7 +86,7 @@ #. On bascule en mode graphe. #. dans la zone centrale, sont affichés les résultats sélectionnés. #. **liste déroulante** des types de graphiques disponibles. On sélectionne et - les données apparaissent sous une nouvelle forme. + les données apparaissent sous une nouvelle forme. #. On peut dans cet zone, **configurer les graphiques générés**. #. appuyez ici pour **mettre en application vos modifications**. @@ -98,7 +98,7 @@ #. pour passer en mode **carte** #. la zone centrale contient la carte de la pêcherie, avec les données - sélectionnées dans les listes de gauche. TODO Comment ça marche? + sélectionnées dans les listes de gauche. TODO Comment ça marche? description de la vue données ----------------------------- @@ -109,6 +109,4 @@ #. pour passer en mode **données** #. la zone centrale contient la matrice des données sélectionnées. #. il est possible d'exporter ces données sous la forme d'un fichier au format - CSV. Un dialogue vous demandera d'indiquer le chemin où sauvegarder le fichier. - - + CSV. Un dialogue vous demandera d'indiquer le chemin où sauvegarder le fichier. Modified: trunk/src/site/rst/v3/user/scripts.rst =================================================================== --- trunk/src/site/rst/v3/user/scripts.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/scripts.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v3/user/simulations.rst =================================================================== --- trunk/src/site/rst/v3/user/simulations.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v3/user/simulations.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id: simulations.rst 3124 2010-11-29 18:14:09Z chatellier $ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -112,20 +112,20 @@ les simulations existantes localement (en supprimant tout filtre précemment saisi). #. **Nom de la simulation** Pour saisir le nom d'une nouvelle simulation. - + Si vous charger une ancienne simulation, le nom de celle-ci sera renseignée ici. - - (*tip) On peut très facilement créer une nouvelle simulation à partir d'une ancienne en la chargeant et en changeant son nom. + + (\*tip) On peut très facilement créer une nouvelle simulation à partir d'une ancienne en la chargeant et en changeant son nom. #. **Description** Pour saisir la description d'une nouvelle simulation. - + Si vous charger une ancienne simulation, la description de celle-ci sera renseignée ici. #. **Region** Pour choisir la région associée à la simulation. - + Le chargement de la région renseignera les zones de stratégies et de populations. - - (*tip) commencer toujours par charger la région avant de renseigner les règles + + (\*tip) commencer toujours par charger la région avant de renseigner les règles car celles-ci sont liées aux données de la région chargée. #. **Stratégies** Une fois une région chargée, on retrouve ici la liste des stratégies connues de la pêcherie. @@ -133,27 +133,27 @@ #. **Populations** Une fois une région chargée, on retrouve ici la liste des populations connues de la pêcherie. - + La sélection d'une population, remplit les données à saisir de cette population dans la zone (9). - + La population utilisé par le simulateur sera celle sélectionnée dans cette liste. #. **Données d'une population** Une fois une population sélectionné, apparaît ici la matrice des données à saisir sur la population. #. **Liste des règles disponibles localement** Il s'agit de la liste des règles connues par IsisFish (voir section script). - - (*tip) en survolant les règles dans la liste, une info bulle apparaît en affichant la description de la règle (voir section script). + + (\*tip) en survolant les règles dans la liste, une info bulle apparaît en affichant la description de la règle (voir section script). #. **Liste des règles ajoutées** Contient la liste des règles que vous avez ajoutées. - + La sélection d'une des règles ajoutées, remplit la zone (15) des paramètres de configuration de la règle. - + Toutes les règles ajoutées dans cette liste seront utilisées par le simulateur. - - (*tip) en survolant les règles dans la liste, une info bulle apparaît en + + (\*tip) en survolant les règles dans la liste, une info bulle apparaît en affichant la description de la règle (voir section script). #. **Ajouter une règle** Permet d'ajouter la règle sélectionné dans la liste déroulante (10). @@ -168,8 +168,8 @@ #. **Paramètres d'un règle ajoutée** Une fois une règle ajoutée sélectionnée dans la liste (11), apparaissent ici ses paramètres. - - (*tip) en survolant les nom des paramètres, une info bulle apparaît en + + (\*tip) en survolant les nom des paramètres, une info bulle apparaît en affichant la documentation du paramètre de la règle (voir section script @Doc). #. **Nombre d'années** Pour indiquer le nombre d'années à utiliser par le simulateur. @@ -181,21 +181,21 @@ #. **Utiliser un script de pré-simulation** Permet d'utiliser (ou pas) un script de pré simulation. L'onglet 'pré-simulation' est activé ou désactivé par ce controle. - + Pour ajouter un script de pré-simulation, la case à cocher doit être activée, on bascule alors dans l'onglet 'Script de pré-simulation' où l'on saisit le script à exécuter avant la simulation. - + Pour ne plus utiliser un script de pré-simulation, il faut désactiver la case à cocher. L'onglet 'pré-simulation' est alors déactivé. #. **Utiliser le plan d'analyse** Permet d'utiliser (ou pas) un plan d'analyse sur la simulation. L'onglet **analyse de sensibilité** est activé ou désactivé par ce controle. - + Pour utiliser un plan d'analyse, la case à cocher doit être activée, on bascule alors dans l'onglet **analyse de sensibilité** (qui est alors activé) où l'on paramètre l'analyse. - + Pour ne plus utiliser un plan d'analyse, il faut désactiver la case à cocher. L'onglet **analyse de sensibilité** est alors désactivé. #. **Exporter uniquement des simulations** @@ -224,16 +224,16 @@ .. image:: images/simulation_04_tabAnalyzePlan.png #. **Liste des plan existants localement** - + Contient la liste de tous les plan d'analyse connus par IsisFish (voir section script). - - (*tip) en survolant les plans d'analyse dans la liste, une info bulle apparaît en affichant la description de la règle (voir section script @Doc). + + (\*tip) en survolant les plans d'analyse dans la liste, une info bulle apparaît en affichant la description de la règle (voir section script @Doc). #. **Liste des plan d'analyse ajoutés** Contient la liste des plans d'analyse que vous avez ajoutée. La sélection d'un des plans d'analyse ajoutés, remplit la zone (6) des paramètres de configuration de ce plan d'analyse. Toutes les plan d'analyse ajoutés dans cette liste seront utilisés par le simulateur. - (*tip) en survolant les plans d'analyse dans la liste, une info bulle apparaît en affichant la description du plan (voir section script). + (\*tip) en survolant les plans d'analyse dans la liste, une info bulle apparaît en affichant la description du plan (voir section script). #. **Ajouter un plan d'analyse** Permet d'ajouter le plan d'analyse sélectionné dans la liste déroulante (1). Une fois ajoutée, la règle apparaît dans la zone (2). @@ -247,7 +247,7 @@ #. **Paramètres d'un plan d'analyse ajouté** Une fois un paln d'analyse ajouté et sélectionné dans la liste (2), apparaissent ici ses paramètres à renseigner. - (*tip) en survolant les nom des paramètres, une info bulle apparaît en affichant la documentation du paramètre (voir section script @Doc) + (\*tip) en survolant les nom des paramètres, une info bulle apparaît en affichant la documentation du paramètre (voir section script @Doc) #. **Retour aux paramètres** Une fois, les plan d'analyse configurés, cliquer ici pour retourner à l'onglet **Paramètre** et continuer la configuration de votre simulation. @@ -263,7 +263,7 @@ #. **chemin du répertoire** : chemin de répertoire où exporter les résultats (voir configuration) #. **...** : pour rechercher un répertoire en local, où l'on veut exporter les résultats. -#. **sauvegarder pour prochaine simulation ** : pour sauvegarder le choix des +#. **sauvegarder pour prochaine simulation** : pour sauvegarder le choix des résultats à exporter ainsi que le répertoire où exporter pour une prochaine simulation. onglet Choix de résultats @@ -273,7 +273,7 @@ #. **résultats disponibles** : liste des résultats disponibles pour la simulation. On sélectionne dans cette liste, ceux que l'on veut traiter. TODO lien avec les exports -#. **sauvegarder pour prochaine simulation ** : pour sauvegarder le choix des +#. **sauvegarder pour prochaine simulation** : pour sauvegarder le choix des résultats à traiter pour une prochaine simulation. onglet Paramètres avancés Modified: trunk/src/site/rst/v4/devel/architecture.rst =================================================================== --- trunk/src/site/rst/v4/devel/architecture.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/devel/architecture.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/devel/architectureMexico.rst =================================================================== --- trunk/src/site/rst/v4/devel/architectureMexico.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/devel/architectureMexico.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/devel/architectureResult.rst =================================================================== --- trunk/src/site/rst/v4/devel/architectureResult.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/devel/architectureResult.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/devel/index.rst =================================================================== --- trunk/src/site/rst/v4/devel/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/devel/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/index.rst =================================================================== --- trunk/src/site/rst/v4/index.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/index.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/API.rst =================================================================== --- trunk/src/site/rst/v4/user/API.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/API.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -46,4 +46,4 @@ .. _Javadoc Nuiton-Matrix: http://maven-site.nuiton.org/nuiton-matrix/nuiton-matrix/apidocs/index.html .. _MatrixND: http://maven-site.nuiton.org/nuiton-matrix/nuiton-matrix/apidocs/org/nuiton… .. _Javadoc Nuiton-Utils: http://maven-site.nuiton.org/nuiton-utils/nuiton-utils/apidocs/index.html -.. _Javadoc Nuiton-j2r: http://maven-site.nuiton.org/nuiton-j2r/apidocs/index.html \ No newline at end of file +.. _Javadoc Nuiton-j2r: http://maven-site.nuiton.org/nuiton-j2r/apidocs/index.html Modified: trunk/src/site/rst/v4/user/FAQ.rst =================================================================== --- trunk/src/site/rst/v4/user/FAQ.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/FAQ.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/caparmor.rst =================================================================== --- trunk/src/site/rst/v4/user/caparmor.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/caparmor.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/changements40.rst =================================================================== --- trunk/src/site/rst/v4/user/changements40.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/changements40.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/installation.rst =================================================================== --- trunk/src/site/rst/v4/user/installation.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/installation.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/installationr.rst =================================================================== --- trunk/src/site/rst/v4/user/installationr.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/installationr.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/isisFishModel.rst =================================================================== --- trunk/src/site/rst/v4/user/isisFishModel.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/isisFishModel.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/migrationv3v4.rst =================================================================== --- trunk/src/site/rst/v4/user/migrationv3v4.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/migrationv3v4.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -130,4 +130,4 @@ group.getMaturityOgive(); Par contre pour modifier une valeur, il faut utiliser la population : -pop.setMaturityOgiveEquation(equation); \ No newline at end of file +pop.setMaturityOgiveEquation(equation); Modified: trunk/src/site/rst/v4/user/scripts.rst =================================================================== --- trunk/src/site/rst/v4/user/scripts.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/scripts.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -74,19 +74,15 @@ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Sigrid V 3.3.0.8 , Plan d'analyse pour la pecherie anchois : modifie les regles -de gestion a chaque simulation `Dossier contenant tous les fichiers nécessaires à ce plan`_ +de gestion a chaque simulation `Dossier contenant tous les fichiers nécessaires à ce plan <../downloads/PlanModifRules.zip>`__ -.. _Dossier contenant tous les fichiers nécessaires à ce plan: ../downloads/PlanModifRules.zip - Plan qui modifie regle de gestion et parametres / modify rules and parameters ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Sigrid V 3.3.0.8 , Plan d'analyse pour la pecherie anchois : modifie les regles de gestion, et des parametres (equations et nb de jours d'inactivite) a chaque -simulation `Dossier contenant tous les fichiers nécessaires à ce plan`_ +simulation `Dossier contenant tous les fichiers nécessaires à ce plan <../downloads/PlanRulesParam.zip>`__ -.. _Dossier contenant tous les fichiers nécessaires à ce plan: ../downloads/PlanRulesParam.zip - Règles de gestion ----------------- Modified: trunk/src/site/rst/v4/user/scriptsR.rst =================================================================== --- trunk/src/site/rst/v4/user/scriptsR.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/scriptsR.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/tutorials/firstLaunch.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/firstLaunch.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/tutorials/firstLaunch.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/tutorials/parameterising.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/parameterising.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/tutorials/parameterising.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/tutorials/useAPI.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/useAPI.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/tutorials/useAPI.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/tutorials.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/tutorials.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/usermanual/GUI.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/GUI.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/GUI.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -206,4 +206,4 @@ Lors du lancement de l'analyse de sensibilité, automatiquement la date courante sera ajouté au nom de l'analyse. Le nom de chaque simulation est terminée par _ -suivi du numéro de la simulation dans l'analyse de sensibilité. \ No newline at end of file +suivi du numéro de la simulation dans l'analyse de sensibilité. Modified: trunk/src/site/rst/v4/user/usermanual/analysisPlan.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/analysisPlan.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/analysisPlan.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/usermanual/inputs.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/inputs.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/inputs.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -1555,4 +1555,4 @@ #. **Sauver** : Pour sauvegarder les modifications effectués sur cet écran. #. **Annuler** : - Pour annuler les modifications effectués sur cet écran. \ No newline at end of file + Pour annuler les modifications effectués sur cet écran. Modified: trunk/src/site/rst/v4/user/usermanual/introduction.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/introduction.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/introduction.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -130,4 +130,4 @@ population, chaque activité de pêche et chaque mesure de gestion. Au sein de chaque zone et pour chaque saison, l'effort de pêche d'une activité particulière, ou l'abondance d'une population, sont supposées -homogènes et uniformément distribuées. \ No newline at end of file +homogènes et uniformément distribuées. Modified: trunk/src/site/rst/v4/user/usermanual/launcher.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/launcher.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/launcher.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -329,4 +329,4 @@ TODO Après cette description détaillé de tout la configuration, un petit tuto pour -réaliser ''en trois clics'' une simulation. \ No newline at end of file +réaliser ''en trois clics'' une simulation. Modified: trunk/src/site/rst/v4/user/usermanual/queue.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/queue.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/queue.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -96,4 +96,4 @@ courriel. #. **corps du message** : corps du courriel à envoyer. #. **envoyer** : pour envoyer le courriel. -#. **annuler** : pour annuler l'envoie de courriel et revenir à la console de log. \ No newline at end of file +#. **annuler** : pour annuler l'envoie de courriel et revenir à la console de log. Modified: trunk/src/site/rst/v4/user/usermanual/results.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/results.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/results.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -107,4 +107,4 @@ #. il est possible d'exporter ces données sous la forme d'un fichier au format CSV. Un dialogue vous demandera d'indiquer le chemin où sauvegarder le fichier. - \ No newline at end of file + Modified: trunk/src/site/rst/v4/user/usermanual/scripts.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/scripts.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/scripts.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -299,4 +299,4 @@ .. image:: script_11_verifSyntax_ko.png -après une vérification qui a échoué \ No newline at end of file +après une vérification qui a échoué Modified: trunk/src/site/rst/v4/user/usermanual/sensitivity.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual/sensitivity.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual/sensitivity.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -5,11 +5,11 @@ .. * $Id$ .. * $HeadURL$ .. * %% -.. * Copyright (C) 1999 - 2010 Ifremer, Code Lutin +.. * Copyright (C) 1999 - 2012 Ifremer, Code Lutin, Chatellier Eric .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - @@ -652,8 +652,8 @@ - objet 3 : isis.simule - objet 4 : call_method - objet 5 : analysis_result (objet R contenant les résultats de l'analyse, dans -le cas d'un résultat calculé par une aov, l'objet est une liste contenant l'aov -et les indices de sensibilité) + le cas d'un résultat calculé par une aov, l'objet est une liste contenant l'aov + et les indices de sensibilité) isis.methodAnalyse est enregistré dans R de la manière suivante : nomdel'analyse_0.nomduresultat.isis.methodAnalyse (tous les espaces sont enlevés @@ -663,4 +663,4 @@ !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! N'oubliez pas que vous pouvez obtenir tous les objets de la session R en -utilisant la fonction ls() dans R. \ No newline at end of file +utilisant la fonction ls() dans R. Modified: trunk/src/site/rst/v4/user/usermanual.rst =================================================================== --- trunk/src/site/rst/v4/user/usermanual.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/usermanual.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/rst/v4/user/warning.rst =================================================================== --- trunk/src/site/rst/v4/user/warning.rst 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/rst/v4/user/warning.rst 2012-11-07 11:33:53 UTC (rev 101) @@ -9,7 +9,7 @@ .. * %% .. * This program is free software: you can redistribute it and/or modify .. * it under the terms of the GNU General Public License as -.. * published by the Free Software Foundation, either version 2 of the +.. * published by the Free Software Foundation, either version 3 of the .. * License, or (at your option) any later version. .. * .. * This program is distributed in the hope that it will be useful, @@ -19,7 +19,7 @@ .. * .. * You should have received a copy of the GNU General Public .. * License along with this program. If not, see -.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * <http://www.gnu.org/licenses/gpl-3.0.html>. .. * #L% .. - Modified: trunk/src/site/site_en.xml =================================================================== --- trunk/src/site/site_en.xml 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/site_en.xml 2012-11-07 11:33:53 UTC (rev 101) @@ -1,69 +1,77 @@ <?xml version="1.0" encoding="UTF-8"?> - + <project name="Isis-fish"> - -<publishDate position="none"/> -<version position="none"/> + <publishDate position="none" /> + <version position="none" /> -<bannerLeft> + <bannerLeft> <src>images/isislogo.png</src> <href>http://www.isis-fish.org</href> -</bannerLeft> + </bannerLeft> -<bannerRight> + <bannerRight> <src>images/ifremer.png</src> -</bannerRight> + </bannerRight> -<poweredBy> - <logo href="http://argouml.tigris.org/" img="/images/argouml-logo.png" name="ArgoUML"/> - <logo href="http://docutils.sourceforge.net/rst.html" img="/images/restructuredtext-logo.png" name="reStructuredText"/> - <logo href="http://topia.labs.libre-entreprise.org/" img="/images/topia-logo.png" name="ToPIA"/> -</poweredBy> +  -<body> + <body> + + <breadcrumbs> + <item name="${project.name}" href="${project.url}" /> + </breadcrumbs> + <links> - <item name="Ifremer" href="http://www.ifremer.fr/"/> -  - <item name="[fr" href="http://www.isis-fish.org/index.html"/> - <item name="en]" href="http://www.isis-fish.org/en/index.html"/> + <item name="Ifremer" href="http://www.ifremer.fr" /> + <item name="CodeLutin" href="http://www.codelutin.com"/> + <item name="[fr" href="http://www.isis-fish.org/index.html" /> + <item name="en]" href="http://www.isis-fish.org/en/index.html" /> </links> <menu name="ISIS-Fish"> - <item name="Presentation" href="index.html"/> - <item name="Roadmap" href="http://forge.codelutin.com/projects/isis-fish/roadmap"/> - <item name="Download" href="download.html"/> - <item name="Publications" href="publications.html"/> - <item name="Research projects" href="research.html"/> - <item name="License" href="license.html"/> - <item name="Contact/Assistance" href="contact.html"/> + <item name="Presentation" href="index.html" /> + <item name="Roadmap" + href="http://forge.codelutin.com/projects/isis-fish/roadmap" /> + <item name="Download" href="download.html" /> + <item name="Publications" href="publications.html" /> + <item name="Research projects" href="research.html" /> + <item name="License" href="license.html" /> + <item name="Contact/Assistance" href="contact.html" /> </menu> - ${reports} + <footer> + <script type="text/javascript" src="http://code.jquery.com/jquery-1.8.2.min.js"></script> + <script type="text/javascript" src="../js/maven-isisfish.js"></script> + <div id='projectMetas' + projectversion='${project.version}' + platform='${project.platform}' + projectid='${project.projectId}' + scm='${project.scm.connection}' + scmwebeditorenabled='${project.scmwebeditorEnabled}' + scmwebeditorurl='${project.scmwebeditorUrl}' + siteSourcesType='${project.siteSourcesType}' + piwikEnabled='${project.piwikEnabled}' + piwikId='${project.piwikId}' /> + </footer> -</body> + </body> </project> Modified: trunk/src/site/site_fr.xml =================================================================== --- trunk/src/site/site_fr.xml 2012-11-07 09:43:58 UTC (rev 100) +++ trunk/src/site/site_fr.xml 2012-11-07 11:33:53 UTC (rev 101) @@ -10,7 +10,7 @@ %% This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as - published by the Free Software Foundation, either version 2 of the + published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, @@ -20,15 +20,14 @@ You should have received a copy of the GNU General Public License along with this program. If not, see - <http://www.gnu.org/licenses/gpl-2.0.html>. + <http://www.gnu.org/licenses/gpl-3.0.html>. #L% --> <project name="Isis-fish"> - - <publishDate position="none"/> - <version position="none"/> + <publishDate position="none"/> + <version position="none"/> <bannerLeft> <src>images/isislogo.png</src> @@ -39,16 +38,21 @@ <src>images/ifremer.png</src> </bannerRight> - <poweredBy> +  <body> + + <breadcrumbs> + <item name="${project.name}" href="${project.url}" /> + </breadcrumbs> + <links> - <item name="Ifremer" href="http://www.ifremer.fr/"/> -  + <item name="Ifremer" href="http://www.ifremer.fr"/> + <item name="CodeLutin" href="http://www.codelutin.com"/> <item name="[fr" href="http://www.isis-fish.org/index.html"/> <item name="en]" href="http://www.isis-fish.org/en/index.html"/> </links> @@ -106,7 +110,19 @@ <item name="Manuel développeur" href="v4/devel/index.html"/> </menu> - ${reports} - + <footer> + <script type="text/javascript" src="http://code.jquery.com/jquery-1.8.2.min.js"></script> + <script type="text/javascript" src="js/maven-isisfish.js"></script> + <div id='projectMetas' + projectversion='${project.version}' + platform='${project.platform}' + projectid='${project.projectId}' + scm='${project.scm.connection}' + scmwebeditorenabled='${project.scmwebeditorEnabled}' + scmwebeditorurl='${project.scmwebeditorUrl}' + siteSourcesType='${project.siteSourcesType}' + piwikEnabled='${project.piwikEnabled}' + piwikId='${project.piwikId}' /> + </footer> </body> </project>

1 0

r100 - trunk/src/site/rst
by jcouteau＠users.forge.codelutin.com Nov. 7, 2012

Nov. 7, 2012

Author: jcouteau Date: 2012-11-07 10:43:58 +0100 (Wed, 07 Nov 2012) New Revision: 100 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/100 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/news.rst Modified: trunk/src/site/rst/news.rst =================================================================== --- trunk/src/site/rst/news.rst 2012-10-11 08:30:14 UTC (rev 99) +++ trunk/src/site/rst/news.rst 2012-11-07 09:43:58 UTC (rev 100) @@ -31,7 +31,7 @@ 2012 ---- -- ***6-7 décembre 2012* : Séminaire Utilisateurs ISIS-Fish - Nantes, FRANCE, INSCRIPTION_** +- ** *6-7 décembre 2012* : Séminaire Utilisateurs ISIS-Fish - Nantes, FRANCE, INSCRIPTION_ ** - *17-21 septembre 212* : `Conference annuelle du CIEM - Bergen`_ , Norvège - *4-8 juin 2012* : `Ecole Chercheur 2012`_ Analyse de sensibilité, Atelier ISIS-Fish (Lyon) - *23-26 avril 2012* : Participation à la réunion de démarrage du projet européen MYFISH_ , Vigo ESPAGNE

1 0

r99 - trunk/src/site/rst
by slehuta＠users.forge.codelutin.com Oct. 11, 2012

Oct. 11, 2012

Author: slehuta Date: 2012-10-11 10:30:14 +0200 (Thu, 11 Oct 2012) New Revision: 99 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/99 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/download.rst Modified: trunk/src/site/rst/download.rst =================================================================== --- trunk/src/site/rst/download.rst 2012-10-09 08:26:48 UTC (rev 98) +++ trunk/src/site/rst/download.rst 2012-10-11 08:30:14 UTC (rev 99) @@ -57,7 +57,12 @@ .. _Base BoB Anchovy: downloads/DataBaseAnchovyBoBHindcast_commented.zip +Base Pelagic fishery of the Bay of Biscay +----------------------------------------- +`Base Pelagic BoB`_ +.. _Base BoB Anchovy: + ISIS-Fish (Version R) ---------------------

1 0

r98 - trunk/src/site/rst/v4/user/tutorials
by slehuta＠users.forge.codelutin.com Oct. 9, 2012

Oct. 9, 2012

Author: slehuta Date: 2012-10-09 10:26:48 +0200 (Tue, 09 Oct 2012) New Revision: 98 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/98 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst Modified: trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst 2012-09-24 16:14:20 UTC (rev 97) +++ trunk/src/site/rst/v4/user/tutorials/simulationPlan.rst 2012-10-09 08:26:48 UTC (rev 98) @@ -203,3 +203,4 @@ Simplex optimization: a technique for improving quality and productivity in research, development, and manufacturing (Chemometrics series). B.R. CRC Press LLC. 402 pp. +* Nocedal, J., and Wright, S.J. 2006. Numerical Optimization. Mikosch, T. V., Resnick, S. I. , andRobinson, S. M. (Eds.). 2nd Ed., Springer Series in Operations Research, New York. \ No newline at end of file

1 0

r97 - trunk/src/site/rst
by slehuta＠users.forge.codelutin.com Sept. 24, 2012

Sept. 24, 2012

Author: slehuta Date: 2012-09-24 18:14:20 +0200 (Mon, 24 Sep 2012) New Revision: 97 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/97 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/download.rst Modified: trunk/src/site/rst/download.rst =================================================================== --- trunk/src/site/rst/download.rst 2012-09-08 00:05:49 UTC (rev 96) +++ trunk/src/site/rst/download.rst 2012-09-24 16:14:20 UTC (rev 97) @@ -48,8 +48,8 @@ .. _Base Golfe de Gascogne: downloads/GolfeDeGascogneDemoV3.3.0.3.zip -Base Bay of Biscay ------------------- +Base Bay of Biscay Anchovy +-------------------------- Une seconde base disponible: Bay of Biscay Anchovy ISIS-Fish V3.3.0.8

1 0

r96 - trunk/src/site/rst/v4/devel
by bpoussin＠users.forge.codelutin.com Sept. 8, 2012

Sept. 8, 2012

Author: bpoussin Date: 2012-09-08 02:05:49 +0200 (Sat, 08 Sep 2012) New Revision: 96 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/96 Log: >From scmwebeditor -- add the file : architectureResult.rst Added: trunk/src/site/rst/v4/devel/architectureResult.rst Added: trunk/src/site/rst/v4/devel/architectureResult.rst =================================================================== --- trunk/src/site/rst/v4/devel/architectureResult.rst (rev 0) +++ trunk/src/site/rst/v4/devel/architectureResult.rst 2012-09-08 00:05:49 UTC (rev 96) @@ -0,0 +1,82 @@ +.. - +.. * #%L +.. * IsisFish +.. * +.. * $Id$ +.. * $HeadURL$ +.. * %% +.. * Copyright (C) 1999 - 2011 Ifremer, Code Lutin, Chatellier Eric +.. * %% +.. * This program is free software: you can redistribute it and/or modify +.. * it under the terms of the GNU General Public License as +.. * published by the Free Software Foundation, either version 2 of the +.. * License, or (at your option) any later version. +.. * +.. * This program is distributed in the hope that it will be useful, +.. * but WITHOUT ANY WARRANTY; without even the implied warranty of +.. * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +.. * GNU General Public License for more details. +.. * +.. * You should have received a copy of the GNU General Public +.. * License along with this program. If not, see +.. * <http://www.gnu.org/licenses/gpl-2.0.html>. +.. * #L% +.. - + +Architecture des résultats +========================== + +Depuis la version 4.1.1.2 le stockage des résultats de simulation ne se font +plus dans la base de données mais dans un fichier binaire. Les performances +et l'utilisation mémoire en sont grandement améliorées. + +Les résultats sont des informations empilées au fur et à mesure du temps. Il +n'y a aucune modification des résultats une fois ceux-ci enregistré. + +Le format de sauvegarde s'appuie sur ce constant pour stocker l'information. + +Structure d'un enregistrement: +- mark qui indique le type de résultat (et possiblement la version du format) +- le résultat + +Les enregistrements sont mis bout à bout. Un gestionnaire spécifique +(lecture/écriture) doit être écrit pour chaque type de résultat. + +Format du mark +-------------- +Le mark est un long qui represente en fait une chaine de 8 caractères. +Pour encoder et decoder la chaine, il faut utiliser BitUtil.toMark +BitUtil.fromMark + +Résultat matriciel +------------------ + +Structure: +- (long) mark: 'resmat01' +- (int) step: le numero du pas de temps +- (UTF8) name: nom du résultat +- (int) dimSize: le nombre de dimension de la matrice +- (UTF8)+ dimNames: les noms de différentes dimensions +- (int)+ dims: la taille de chaque dimensions +- (UTF8)+ sems: les semantiques de toutes les dimensions +- (int) dataSize: le nombre de cellules de la matrice +- (double)+ data: toutes les valeurs de la matrice + +Performance +----------- + +Les simulations grâce à ce nouveau format sont environs 6 fois plus rapide, +mais surtout, elles ont une consomation mémoire beaucoup moindre qui permet +de faire des simulations plus importantes dans des temps acceptable, vu que +la JVM utilise moins le GC. + +Développement futur +------------------- +Avec ce mécanisme, il sera simple d'ajouter de nouveaux types de résultat. +Un lecteur générique redirigerais la lecture vers le bon type en fonction du +mark qui est devant chaque résulat. + +Pour l'écriture chaque objet aurait son propre moyen d'écrire les +informations dont il a besoin pour se recharger en mettant toujours un mark +particulier avant d'enregistrer ces informations. +

1 0

r95 - trunk/src/site/rst/v4/devel
by bpoussin＠users.forge.codelutin.com Sept. 7, 2012

Sept. 7, 2012

Author: bpoussin Date: 2012-09-08 01:31:22 +0200 (Sat, 08 Sep 2012) New Revision: 95 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/95 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/v4/devel/index.rst Modified: trunk/src/site/rst/v4/devel/index.rst =================================================================== --- trunk/src/site/rst/v4/devel/index.rst 2012-09-07 08:05:49 UTC (rev 94) +++ trunk/src/site/rst/v4/devel/index.rst 2012-09-07 23:31:22 UTC (rev 95) @@ -28,6 +28,8 @@ * `Architecture globale`_ * `Architecture Mexico-Plan d analyse`_ +* `Architecture des résultats`_ .. _Architecture globale: architecture.html .. _Architecture Mexico-Plan d analyse: architectureMexico.html +.. _Architecture des résultats: architectureResult.html \ No newline at end of file

1 0

r94 - trunk/src/site/rst/v4/user/tutorials
by echatellier＠users.forge.codelutin.com Sept. 7, 2012

Sept. 7, 2012

Author: echatellier Date: 2012-09-07 10:05:49 +0200 (Fri, 07 Sep 2012) New Revision: 94 Url: http://forge.codelutin.com/repositories/revision/isis-fish-docs/94 Log: >From scmwebeditor -- Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst Modified: trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst =================================================================== --- trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-09-07 08:05:06 UTC (rev 93) +++ trunk/src/site/rst/v4/user/tutorials/utilCaparmor.rst 2012-09-07 08:05:49 UTC (rev 94) @@ -32,15 +32,18 @@ Voir l'état de la queue de simulations caparmor ----------------------------------------------- :: + qstat Voir l'etat d'avancement d'un job --------------------------------- :: + qstat -f <iddujob> Exemple: :: + qstat -f 1234567[].service0 Lire les logs

1 0

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