Eric Chatellier a écrit :
Le 27/01/2010 18:07, Delphine.Rocklin@ifremer.fr a écrit :
Hello
Sigrid a découvert un truc louche dans le fichier "parameters properties" des simus d'AS. Apparemment, dans mes AS, ISIS charge un plan d'analyse alors que je ne lui ai rien demandé...et qu'il n'apparaît pas non plus dans l'onglet "plan de simulation".... bizarre bizarre...isn't it?
Sigrid, tu peux m'envoyer le fichier de parametres ? Ou comment tu as vu qu'un plan était utilisé ?
le voilà.
Mais de toute façon, cela ne joue pas car on se sert des résultats de l'appel R pour construire la liste des simulations, et on ne se sert pas du plan dans ce cas.
OK. je pense vraiment que le ciblage a l air d'un bon fautif... A+ -- Sigrid LEHUTA ~ ><> ~ Doctorante Département Ecologie et Modèles pour l'Halieutique IFREMER, rue de l'ile d'Yeu BP 21105 44311 Nantes Cedex 03 Tél : +33 (0)2 40 37 41 23 (interne : 8123) #Parameters #Fri Jan 08 11:34:03 GMT 2010 analysePlan= analysePlanNumber=-1 description=Tous les param\u00E8tres sont OK\n\nJ'ai modifi\u00E9 les valeurs de population de d\u00E9part. Principalement j'ai supprim\u00E9 le groupe 0. On commence en janvier, il n'y a pas d'oeufs car ils \u00E9closent en janvier. \n\nJ'ai laiss\u00E9 les mm valeurs pour les autres groupes\n\nModification des facteurs de standardisation, avec 0.5 pur les filets \u00E0 poisson et les nasses exportDirectory=C\:\\Documents and Settings\\drocklin\\isis-export exports=Abundances.java,Biomasses.java,CapturesNombre.java,CapturesPoids.java,Debarquement.java,DebarquementPoids.java,EffortZone.java,EffortsMetier.java,RejetsNombre.java,RejetsPoids.java, isisFishVersion=3.2.0.9 libLogLevel=error numberOfSensitivitySimulation=36 numberOfYear=15 onlyExport=false plan.0.parameter.M1=1.6e-3;4.4e-4 plan.0.parameter.M2=1.6e-3;4.8e-4 plan.0.parameter.M3=2.0e-3;4.8e-4 plan.0.parameter.Population=fr.ifremer.isisfish.entities.Population\#1228837812156\#0.04498969305350531 plan.0.parameter.nomfichier_debarquements=C\:/Documents and Settings/drocklin/Bureau/ObservedLandings/Observedlandings2008.csv plan.0.parameter.pas=1e-5 plans=CalibrationEspeceq1q2Export, population.Langouste\ Corse.number=[[0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [9595.0, 4797.0, 8909.0, 6168.0, 6168.0, 5483.0, 10280.0, 6168.0, 2741.0, 6853.0, 8224.0, 7539.0, 2056.0, 2741.0, 8224.0, 2056.0, 4797.0, 4112.0, 2741.0, 3427.0, 15077.0, 2741.0, 2056.0, 15077.0, 13707.0, 6168.0, 2741.0, 8224.0, 8909.0, 8909.0, 15077.0, 10280.0, 3427.0], [9595.0, 4797.0, 8909.0, 6168.0, 6168.0, 5483.0, 10280.0, 6168.0, 2741.0, 6853.0, 8224.0, 7539.0, 2056.0, 2741.0, 8224.0, 2056.0, 4797.0, 4112.0, 2741.0, 3427.0, 15077.0, 2741.0, 2056.0, 15077.0, 13707.0, 6168.0, 2741.0, 8224.0, 8909.0, 8909.0, 15077.0, 10280.0, 3427.0], [9595.0, 4797.0, 8909.0, 6168.0, 6168.0, 5483.0, 10280.0, 6168.0, 2741.0, 6853.0, 8224.0, 7539.0, 2056.0, 2741.0, 8224.0, 2056.0, 4797.0, 4112.0, 2741.0, 3427.0, 15077.0, 2741.0, 2056.0, 15077.0, 13707.0, 6168.0, 2741.0, 8224.0, 8909.0, 8909.0, 15077.0, 10280.0, 3427.0], [3161.0, 1580.0, 2935.0, 2032.0, 2032.0, 1806.0, 3386.0, 2032.0, 903.0, 2258.0, 2709.0, 2483.0, 677.0, 903.0, 2709.0, 677.0, 1580.0, 1355.0, 903.0, 1129.0, 4967.0, 903.0, 677.0, 4967.0, 4515.0, 2032.0, 903.0, 2709.0, 2935.0, 2935.0, 4967.0, 3386.0, 1129.0], [1740.0, 870.0, 1615.0, 1118.0, 1118.0, 994.0, 1864.0, 1118.0, 497.0, 1243.0, 1491.0, 1367.0, 373.0, 497.0, 1491.0, 373.0, 870.0, 746.0, 497.0, 621.0, 2734.0, 497.0, 373.0, 2734.0, 2485.0, 1118.0, 497.0, 1491.0, 1615.0, 1615.0, 2734.0, 1864.0, 621.0], [2374.0, 1187.0, 2205.0, 1526.0, 1526.0, 1357.0, 2544.0, 1526.0, 678.0, 1696.0, 2035.0, 1865.0, 509.0, 678.0, 2035.0, 509.0, 1187.0, 1018.0, 678.0, 848.0, 3731.0, 678.0, 509.0, 3731.0, 3392.0, 1526.0, 678.0, 2035.0, 2205.0, 2205.0, 3731.0, 2544.0, 848.0], [32.0, 16.0, 30.0, 21.0, 21.0, 18.0, 35.0, 21.0, 9.0, 23.0, 28.0, 25.0, 7.0, 9.0, 28.0, 7.0, 16.0, 14.0, 9.0, 12.0, 51.0, 9.0, 7.0, 51.0, 46.0, 21.0, 9.0, 28.0, 30.0, 30.0, 51.0, 35.0, 12.0], [3226.0, 1613.0, 2996.0, 2074.0, 2074.0, 1844.0, 3457.0, 2074.0, 922.0, 2304.0, 2765.0, 2535.0, 691.0, 922.0, 2765.0, 691.0, 1613.0, 1383.0, 922.0, 1152.0, 5070.0, 922.0, 691.0, 5070.0, 4609.0, 2074.0, 922.0, 2765.0, 2996.0, 2996.0, 5070.0, 3457.0, 1152.0], [3285.0, 1642.0, 3050.0, 2112.0, 2112.0, 1877.0, 3519.0, 2112.0, 938.0, 2346.0, 2815.0, 2581.0, 704.0, 938.0, 2815.0, 704.0, 1642.0, 1408.0, 938.0, 1173.0, 5162.0, 938.0, 704.0, 5162.0, 4692.0, 2112.0, 938.0, 2815.0, 3050.0, 3050.0, 5162.0, 3519.0, 1173.0], [729.0, 365.0, 677.0, 469.0, 469.0, 417.0, 782.0, 469.0, 208.0, 521.0, 625.0, 573.0, 156.0, 208.0, 625.0, 156.0, 365.0, 313.0, 208.0, 261.0, 1146.0, 208.0, 156.0, 1146.0, 1042.0, 469.0, 208.0, 625.0, 677.0, 677.0, 1146.0, 782.0, 261.0], [677.0, 339.0, 629.0, 435.0, 435.0, 387.0, 725.0, 435.0, 193.0, 484.0, 580.0, 532.0, 145.0, 193.0, 580.0, 145.0, 339.0, 290.0, 193.0, 242.0, 1064.0, 193.0, 145.0, 1064.0, 967.0, 435.0, 193.0, 580.0, 629.0, 629.0, 1064.0, 725.0, 242.0], [313.0, 156.0, 291.0, 201.0, 201.0, 179.0, 335.0, 201.0, 89.0, 223.0, 268.0, 246.0, 67.0, 89.0, 268.0, 67.0, 156.0, 134.0, 89.0, 112.0, 492.0, 89.0, 67.0, 492.0, 447.0, 201.0, 89.0, 268.0, 291.0, 291.0, 492.0, 335.0, 112.0], [20.0, 10.0, 19.0, 13.0, 13.0, 12.0, 22.0, 13.0, 6.0, 14.0, 17.0, 16.0, 4.0, 6.0, 17.0, 4.0, 10.0, 9.0, 6.0, 7.0, 32.0, 6.0, 4.0, 32.0, 29.0, 13.0, 6.0, 17.0, 19.0, 19.0, 32.0, 22.0, 7.0]] populations=Langouste Corse preScript=import org.apache.commons.beanutils.BeanUtils;\nimport org.apache.commons.beanutils.ConvertUtilsBean;\nimport fr.ifremer.isisfish.util.ConverterUtil;\nConvertUtilsBean beanUtils \= ConverterUtil.getConverter(db);\n/* Factor \: Langouste Corse.naturalDeathRate */\ncontext.setValue("Langouste Corse.naturalDeathRate.Ktemp", 0.8, "*");\n/* Factor \: Langouste Corse Groupe 13.reproductionRate */\njava.lang.Double value1 \= (java.lang.Double)beanUtils.convert("174256.5", java.lang.Double.class);\nTopiaEntity entity1 \= db.findByTopiaId("fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.18449218770651843");\nBeanUtils.setProperty(entity1, "reproductionRate", value1);\n/* Factor \: Langouste Corse.capturability */\norg.codelutin.math.matrix.MatrixNDImpl value2 \= (org.codelutin.math.matrix.MatrixNDImpl)beanUtils.convert("[isisfish.population.capturability,[14, 6],[\\"isisfish.population.group\\", \\"isisfish.population.season\\"],[[org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.18449218770651843), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.09813654362063029), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.6841124507249152), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.06353642526153791), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.8290339586526133), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.8979303035876431), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.9441646508059989), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083359\#0.05200405335315117), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083359\#0.16571720114510646), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083359\#0.0952947788001629), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083359\#0.9215988207315877), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083359\#0.9762463334703244), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083359\#0.23505415664016316), org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationGroup\#1228840083359\#0.09602953272917114)], [org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationSeasonInfo\#1238426716358\#0.22923721870213498), java.lang.String(org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationSeasonInfo\#1238426723671\#0.07309433094757378)), java.lang.String(org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationSeasonInfo\#1238426732686\#0.8452107811939488)), java.lang.String(org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationSeasonInfo\#1238426223799\#0.365236107922539)), java.lang.String(org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationSeasonInfo\#1251384778627\#0.4524366728494662)), java.lang.String(org.codelutin.topia.persistence.TopiaEntity(fr.ifremer.isisfish.entities.PopulationSeasonInfo\#1238426704546\#0.4249095341686365))]],[[0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0014399999999999999, 0.0014399999999999999, 0.0014399999999999999, 0.0014399999999999999, 0.0014399999999999999, 0.0014399999999999999], [0.0036880000000000003, 0.0036880000000000003, 0.0036880000000000003, 0.0036880000000000003, 0.0036880000000000003, 0.0036880000000000003], [2.8E-4, 2.8E-4, 2.8E-4, 2.8E-4, 2.8E-4, 2.8E-4], [0.002064, 0.002064, 0.002064, 0.002064, 0.002064, 0.002064], [0.024, 0.024, 0.024, 0.024, 0.024, 0.024], [3.432E-4, 3.432E-4, 3.432E-4, 3.432E-4, 3.432E-4, 3.432E-4], [8.64E-5, 8.64E-5, 8.64E-5, 8.64E-5, 8.64E-5, 8.64E-5], [0.001696, 0.001696, 0.001696, 0.001696, 0.001696, 0.001696], [0.001816, 0.001816, 0.001816, 0.001816, 0.001816, 0.001816], [0.002928, 0.002928, 0.002928, 0.002928, 0.002928, 0.002928], [0.012640000000000002, 0.012640000000000002, 0.012640000000000002, 0.012640000000000002, 0.012640000000000002, 0.012640000000000002]]]", org.codelutin.math.matrix.MatrixNDImpl.class);\nTopiaEntity entity2 \= db.findByTopiaId("fr.ifremer.isisfish.entities.Population\#1228837812156\#0.04498969305350531");\nBeanUtils.setProperty(entity2, "capturability", value2);\n/* Factor \: Langouste Corse Groupe 11.reproductionRate */\njava.lang.Double value3 \= (java.lang.Double)beanUtils.convert("41808.0", java.lang.Double.class);\nTopiaEntity entity3 \= db.findByTopiaId("fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.18449218770651843");\nBeanUtils.setProperty(entity3, "reproductionRate", value3);\n/* Factor \: Langouste Corse Groupe 12.reproductionRate */\njava.lang.Double value4 \= (java.lang.Double)beanUtils.convert("103821.0", java.lang.Double.class);\nTopiaEntity entity4 \= db.findByTopiaId("fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.18449218770651843");\nBeanUtils.setProperty(entity4, "reproductionRate", value4);\n/* Factor \: Filet Poisson.standardisationFactor */\njava.lang.Double value5 \= (java.lang.Double)beanUtils.convert("0.45", java.lang.Double.class);\nTopiaEntity entity5 \= db.findByTopiaId("fr.ifremer.isisfish.entities.Gear\#1237279966808\#0.0035222701925787803");\nBeanUtils.setProperty(entity5, "standardisationFactor", value5);\n/* Factor \: Filet langouste.standardisationFactor */\njava.lang.Double value6 \= (java.lang.Double)beanUtils.convert("1.2", java.lang.Double.class);\nTopiaEntity entity6 \= db.findByTopiaId("fr.ifremer.isisfish.entities.Gear\#1237280321859\#0.44017660366689815");\nBeanUtils.setProperty(entity6, "standardisationFactor", value6);\n/* Factor \: Langouste Corse Groupe 10.reproductionRate */\njava.lang.Double value7 \= (java.lang.Double)beanUtils.convert("18897.0", java.lang.Double.class);\nTopiaEntity entity7 \= db.findByTopiaId("fr.ifremer.isisfish.entities.PopulationGroup\#1228840083343\#0.18449218770651843");\nBeanUtils.setProperty(entity7, "reproductionRate", value7); regionName=BonifacioLangouste3 resultNames=matrixNetValueOfLandingsPerStrategyMet,matrixFuelCostsPerVessel,matrixBiomass,matrixOwnerMarginOverVariableCostsPerStrategyPerVessel,matrixEffortPerStrategyMet,matrixCatchRatePerStrategyMet,matrixPrice,matrixNetValueOfLandingsPerStrategyMetPerVessel,matrixGrossValueOfLandingsPerStrategyMetPerVessel,matrixFuelCostsOfTravelPerVessel,matrixOwnerMarginOverVariableCostsPerStrategy,matrixFishingMortality,matrixEffortPerZonePop,matrixCrewSharePerStrategyPerVessel,matrixLandingPerMet,matrixDiscardsPerStrMet,matrixDiscardsWeightPerStrMet,matrixNoActivity,matrixCostsOfFishingPerVessel,matrixRepairAndMaintenanceGearCostsPerVessel,matrixGrossValueOfLandingsPerSpeciesPerStrategyMet,matrixCatchPerStrategyMet,matrixFishingTimePerMonthPerVessel,matrixVesselMarginOverVariableCostsPerStrategyPerVessel,matrixVesselMarginOverVariableCostsPerStrategyMetPerVessel,matrixGrossValueOfLandingsPerStrategyMet,matrixVesselMarginOverVariableCostsPerStrategy,matrixStdTravelEffortPerStrategyMet,matrixCatchWeightPerStrategyMet,matrixMetierZone,matrixSharedNotFixedCostsPerVessel,matrixAbundance,matrixNetRenevueToSharePerStrategyMetPerVessel,matrixOwnerMarginOverVariableCostsPerStrategyMetPerVessel,matrixOtherRunningCostsPerVessel, rules= scriptLogLevel=info sensitivity.0.parameter.modifR=false sensitivity.0.parameter.r=4 sensitivitycalculator=SensitivityCalculatorRMorris sensitivityexport.0.parameter.pop=fr.ifremer.isisfish.entities.Population\#1228837812156\#0.04498969305350531 sensitivityexport.1.parameter.pop=fr.ifremer.isisfish.entities.Population\#1228837812156\#0.04498969305350531 sensitivityexport.2.parameter.pop=fr.ifremer.isisfish.entities.Population\#1228837812156\#0.04498969305350531 sensitivityexport.3.parameter.pop=fr.ifremer.isisfish.entities.Population\#1228837812156\#0.04498969305350531 sensitivityexport.4.parameter.pop=fr.ifremer.isisfish.entities.Population\#1228837812156\#0.04498969305350531 sensitivityexport.5.parameter.pop=fr.ifremer.isisfish.entities.Population\#1228837812156\#0.04498969305350531 sensitivityexports=SensitivityBiomassY3,SensitivityCapturesWeightY1,SensitivityBiomassRelativeY6,SensitivityCapturesWeightRelativeY4,SensitivityGenitorBiomassRelativeY5,SensitivityGenitorBiomassY2, simulLogLevel=info simulatorName=DefaultSimulator.java strategies=Petits_Pianottoli,Grands_Pianottoli,Petits_Bonifacio,Moyens_Bonifacio,Grands_Bonifacio,Petits_Piantarella,Grands_Piantarella,Petits_SantAmanza,Moyens_SantAmanza,Petits_LaChiappa,Petits_PortoVecchio,Moyens_PortoVecchio,Grands_PortoVecchio useAnalysePlan=false useOptimization=true usePreScript=true useStatistic=true