April 2014 - Tutti-commits - mailman.cloud.codelutin.com

r1721 - trunk
by tchemit＠users.forge.codelutin.com 22 Apr '14

22 Apr '14

Author: tchemit Date: 2014-04-22 23:58:53 +0200 (Tue, 22 Apr 2014) New Revision: 1721 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1721 Log: fix i18n version Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2014-04-22 17:00:37 UTC (rev 1720) +++ trunk/pom.xml 2014-04-22 21:58:53 UTC (rev 1721) @@ -136,7 +136,7 @@ <signatureVersion>1.0</signatureVersion>  - <nuitonI18nVersion>3.1</nuitonI18nVersion> + <nuitonI18nVersion>3.0</nuitonI18nVersion> <nuitonValidatorVersion>3.0-rc-1</nuitonValidatorVersion> <eugenePluginVersion>2.7.4</eugenePluginVersion>

1 0

r1720 - trunk
by tchemit＠users.forge.codelutin.com 22 Apr '14

22 Apr '14

Author: tchemit Date: 2014-04-22 19:00:37 +0200 (Tue, 22 Apr 2014) New Revision: 1720 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1720 Log: refs #4979 (use adagio 3.5.2) Modified: trunk/pom.xml Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2014-04-22 16:10:25 UTC (rev 1719) +++ trunk/pom.xml 2014-04-22 17:00:37 UTC (rev 1720) @@ -136,14 +136,14 @@ <signatureVersion>1.0</signatureVersion>  - <nuitonI18nVersion>3.0</nuitonI18nVersion> + <nuitonI18nVersion>3.1</nuitonI18nVersion> <nuitonValidatorVersion>3.0-rc-1</nuitonValidatorVersion> <eugenePluginVersion>2.7.4</eugenePluginVersion>  <jaxxVersion>2.8.4</jaxxVersion> <swingXVersion>1.6.4</swingXVersion> <slf4jVersion>1.7.5</slf4jVersion> - <adagioVersion>3.5.2-SNAPSHOT</adagioVersion> + <adagioVersion>3.5.2</adagioVersion> <bluecoveVersion>2.1.0</bluecoveVersion> <hibernateVersion>4.3.1.Final</hibernateVersion> <springVersion>4.0.1.RELEASE</springVersion>

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r1719 - trunk/tutti-ui-swing/src/main/resources/icons
by tchemit＠users.forge.codelutin.com 22 Apr '14

22 Apr '14

Author: tchemit Date: 2014-04-22 18:10:25 +0200 (Tue, 22 Apr 2014) New Revision: 1719 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1719 Log: refs #4958 (add icons) Added: trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-dirty.png trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-ready-to-sync.png trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-waiting.png Added: trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-dirty.png =================================================================== (Binary files differ) Property changes on: trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-dirty.png ___________________________________________________________________ Added: svn:mime-type + image/png Added: trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-ready-to-sync.png =================================================================== (Binary files differ) Property changes on: trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-ready-to-sync.png ___________________________________________________________________ Added: svn:mime-type + image/png Added: trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-waiting.png =================================================================== (Binary files differ) Property changes on: trunk/tutti-ui-swing/src/main/resources/icons/action-cruise-waiting.png ___________________________________________________________________ Added: svn:mime-type + image/png

1 0

r1718 - in trunk: . tutti-persistence/src/main/java/fr/ifremer tutti-persistence/src/main/java/fr/ifremer/tutti tutti-persistence/src/main/java/fr/ifremer/tutti/persistence tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/test tutti-persistence/src/main/resources tutti-persistence/src/main/resources/i18n tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service tutti-persistence/src/test/resources tut
by tchemit＠users.forge.codelutin.com 21 Apr '14

21 Apr '14

Author: tchemit Date: 2014-04-21 15:27:20 +0200 (Mon, 21 Apr 2014) New Revision: 1718 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1718 Log: refs-60 #4979 Added: trunk/tutti-persistence/src/main/resources/applicationContext-conf-tutti.xml trunk/tutti-persistence/src/main/resources/queries-failsafe.hbm.xml trunk/tutti-persistence/src/main/resources/tutti-conf.xml Removed: trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/ trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml Modified: trunk/pom.xml trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/TuttiConfiguration.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/TuttiConfigurationOption.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/test/DatabaseResource.java trunk/tutti-persistence/src/main/resources/applicationContext-service-tutti.xml trunk/tutti-persistence/src/main/resources/ehcache.xml trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_en_GB.properties trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_fr_FR.properties trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties trunk/tutti-persistence/src/main/resources/tuttiBeanRefFactory.xml trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/resources/beanRefFactoryWitNoDb.xml trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/TuttiServiceContext.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/TuttiExportService.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/AbstractServiceTest.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/DecoratorServiceTest.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/ServiceDbResource.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/ValidationServiceTest.java trunk/tutti-ui-swing/pom.xml trunk/tutti-ui-swing/src/license/THIRD-PARTY.properties trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiApplicationUpdaterCallBack.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiDbUpdaterCallBack.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/config/TuttiConfigUIHandler.java Modified: trunk/pom.xml =================================================================== --- trunk/pom.xml 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/pom.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -139,13 +139,14 @@ <nuitonI18nVersion>3.0</nuitonI18nVersion> <nuitonValidatorVersion>3.0-rc-1</nuitonValidatorVersion> <eugenePluginVersion>2.7.4</eugenePluginVersion> - <hibernateVersion>3.6.10.Final</hibernateVersion> +  <jaxxVersion>2.8.4</jaxxVersion> <swingXVersion>1.6.4</swingXVersion> <slf4jVersion>1.7.5</slf4jVersion> - <adagioVersion>3.4.1</adagioVersion> + <adagioVersion>3.5.2-SNAPSHOT</adagioVersion> <bluecoveVersion>2.1.0</bluecoveVersion> - <springVersion>3.2.3.RELEASE</springVersion> + <hibernateVersion>4.3.1.Final</hibernateVersion> + <springVersion>4.0.1.RELEASE</springVersion> <hsqldbVersion>1.8.0.10</hsqldbVersion>  Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/TuttiConfiguration.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/TuttiConfiguration.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/TuttiConfiguration.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -25,14 +25,11 @@ */ import com.google.common.base.Charsets; -import com.google.common.base.Predicate; -import com.google.common.collect.Sets; -import com.google.common.io.Files; -import fr.ifremer.tutti.persistence.RessourceClassLoader; +import fr.ifremer.adagio.core.config.AdagioConfiguration; +import fr.ifremer.adagio.core.config.AdagioConfigurationOption; import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; import fr.ifremer.tutti.type.CoordinateEditorType; import fr.ifremer.tutti.type.WeightUnit; -import org.apache.commons.io.IOUtils; import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.builder.ReflectionToStringBuilder; import org.apache.commons.logging.Log; @@ -41,6 +38,7 @@ import org.nuiton.config.ApplicationConfigHelper; import org.nuiton.config.ApplicationConfigProvider; import org.nuiton.config.ArgumentsParserException; +import org.nuiton.config.ConfigOptionDef; import org.nuiton.jaxx.application.ApplicationConfiguration; import org.nuiton.jaxx.application.ApplicationIOUtil; import org.nuiton.jaxx.application.ApplicationTechnicalException; @@ -48,15 +46,13 @@ import javax.swing.KeyStroke; import java.awt.Color; -import java.io.BufferedReader; -import java.io.BufferedWriter; import java.io.File; import java.io.IOException; -import java.io.InputStream; import java.net.URL; +import java.util.HashMap; import java.util.List; import java.util.Locale; -import java.util.Properties; +import java.util.Map; import java.util.Set; import static org.nuiton.i18n.I18n.t; @@ -82,10 +78,48 @@ TuttiConfiguration.instance = instance; } + public static Set<ApplicationConfigProvider> getDefaultApplicationConfig(ApplicationConfig applicationConfig) { + + // get all config providers + Set<ApplicationConfigProvider> providers = + ApplicationConfigHelper.getProviders(null, + null, + null, + true); + + // load all default options + ApplicationConfigHelper.loadAllDefaultOption(applicationConfig, + providers); + + // Override some adagio default config + Map<ConfigOptionDef, ConfigOptionDef> translateOptions = new HashMap<>(); + + translateOptions.put(TuttiConfigurationOption.BASEDIR, AdagioConfigurationOption.BASEDIR); + translateOptions.put(TuttiConfigurationOption.DATA_DIRECTORY, AdagioConfigurationOption.DATA_DIRECTORY); + translateOptions.put(TuttiConfigurationOption.DB_NAME, AdagioConfigurationOption.DB_NAME); + translateOptions.put(TuttiConfigurationOption.JDBC_USERNAME, AdagioConfigurationOption.JDBC_USERNAME); + translateOptions.put(TuttiConfigurationOption.JDBC_PASSWORD, AdagioConfigurationOption.JDBC_PASSWORD); + translateOptions.put(TuttiConfigurationOption.JDBC_URL, AdagioConfigurationOption.JDBC_URL); + + for (Map.Entry<ConfigOptionDef, ConfigOptionDef> entry : translateOptions.entrySet()) { + ConfigOptionDef tuttiKey = entry.getKey(); + ConfigOptionDef adagioKey = entry.getValue(); + String tuttiOptionValue = String.format("${%s}", tuttiKey.getKey()); + applicationConfig.setDefaultOption(adagioKey.getKey(), tuttiOptionValue); + } + + applicationConfig.setDefaultOption(AdagioConfigurationOption.DB_ENUMERATION_RESOURCE.getKey(), + "classpath*:adagio-db-enumerations.properties,classpath*:tutti-db-enumerations.properties"); + + return providers; + } + protected final String[] optionKeyToNotSave; protected File configFile; + protected AdagioConfiguration adagioConfig; + public TuttiConfiguration(ApplicationConfig applicationConfig) { super(applicationConfig); optionKeyToNotSave = null; @@ -94,18 +128,8 @@ public TuttiConfiguration(String file, String... args) { super(new ApplicationConfig()); applicationConfig.setEncoding(Charsets.UTF_8.name()); + Set<ApplicationConfigProvider> providers = getDefaultApplicationConfig(applicationConfig); - // get all config providers - Set<ApplicationConfigProvider> providers = - ApplicationConfigHelper.getProviders(null, - null, - null, - true); - - // load all default options - ApplicationConfigHelper.loadAllDefaultOption(applicationConfig, - providers); - // get all transient and final option keys Set<String> optionToSkip = ApplicationConfigHelper.getTransientOptionKeys(providers); @@ -148,8 +172,12 @@ tuttiBasedir.getAbsolutePath()); } - public void initConfig(RessourceClassLoader resourceLoader) { + public void initConfig() { + // Give the same applicationConfig to adagio + adagioConfig = new AdagioConfiguration(applicationConfig); + AdagioConfiguration.setInstance(adagioConfig); + File directory = getDbDirectory(); ApplicationIOUtil.forceMkdir(directory, t("tutti.io.mkDir.error", directory)); directory = getDbAttachmentDirectory(); @@ -174,34 +202,6 @@ ApplicationIOUtil.forceMkdir(tmpDirectory, t("tutti.io.mkDir.error", tmpDirectory)); ApplicationIOUtil.forceMkdir(getReportBackupDirectory(), t("tutti.io.mkDir.error", getReportBackupDirectory())); - - // add a predicate to search the configuration file from his directory instead of the class-path - resourceLoader.addSearchInDirectoriesPredicate(new Predicate<String>() { - - Set<String> matchingNames = Sets.newHashSet( - getDbConfigurationPath().getName(), - getDbEnumerationPath().getName()); - - @Override - public boolean apply(String input) { - return matchingNames.contains(input); - } - }); - - // get configuration file path - File configurationPath = getDbConfigurationPath(); - - // add his directory in path to search - resourceLoader.addDirectory(configurationPath.getParentFile()); - - // get enumeration file path - File enumerationPath = getDbEnumerationPath(); - - // add his directory in path to search - resourceLoader.addDirectory(enumerationPath.getParentFile()); - - // generate external configuration files if required - generateExternalDbFiles(false); } public void prepareDirectories() { @@ -227,25 +227,6 @@ t("tutti.io.mkDir.error", getReportBackupDirectory())); } - public void generateExternalDbFiles(boolean force) { - - try { - // always generate db configuration file - // see http://forge.codelutin.com/issues/2352 - generateDbConfiguration(true); - - } catch (IOException e) { - throw new ApplicationTechnicalException(t("tutti.persistence.config.generateFile.error")); - } - - try { - - generateDbEnumerationConfiguration(force); - } catch (IOException e) { - throw new ApplicationTechnicalException(t("tutti.persistence.config.generateEnumFile.error")); - } - } - public File newTempFile(String basename) { return new File(getTmpDirectory(), basename + "_" + System.nanoTime()); } @@ -339,10 +320,6 @@ //--- Option getter ------------------------------------------------------// //------------------------------------------------------------------------// - public File getDbConfigurationPath() { - return applicationConfig.getOptionAsFile(TuttiConfigurationOption.DB_CONFIGURATION_PATH.getKey()); - } - public File getDbDirectory() { return applicationConfig.getOptionAsFile(TuttiConfigurationOption.DB_DIRECTORY.getKey()); } @@ -372,10 +349,6 @@ return result; } - public File getDbEnumerationPath() { - return applicationConfig.getOptionAsFile(TuttiConfigurationOption.DB_ENUMERATION_PATH.getKey()); - } - public String getJdbcUrl() { return applicationConfig.getOption(TuttiConfigurationOption.JDBC_URL.getKey()); } @@ -663,96 +636,96 @@ //--- Internal methods ---------------------------------------------------// //------------------------------------------------------------------------// - protected void generateDbConfiguration(boolean force) throws IOException { +// protected void generateDbConfiguration(boolean force) throws IOException { +// +// File destination = getDbConfigurationPath(); +// +// if (force || !destination.exists()) { +// +// // load db configuration template (tutti-db.properties) +// +// if (log.isInfoEnabled()) { +// log.info("Generate " + destination + " from classpath."); +// } +// Properties result = new Properties(); +// InputStream in = getClass().getResourceAsStream("/tutti-db-conf.properties"); +// try { +// result.load(in); +// in.close(); +// } finally { +// IOUtils.closeQuietly(in); +// } +// +// // replace some values from ApplicationConfig +// +// result.put("dataSource.jdbc.driver", getJdbcDriver().getName()); +// result.put("dataSource.jdbc.username", getJdbcUsername()); +// result.put("dataSource.jdbc.password", getJdbcPassword()); +// result.put("dataSource.jdbc.url", getJdbcUrl()); +// result.put("hibernate.dialect", getHibernateDialect().getName()); +// result.put("hibernate.show_sql", isHibernateShowSql() + ""); +// result.put("hibernate.format_sql", isHibernateFormatSql() + ""); +// result.put("hibernate.use_sql_comments", isHibernateUseSqlComment() + ""); +// result.put("ehcache.disk.store.dir", getCacheDirectory().getAbsolutePath()); +// +// // write result file at destination +// +// BufferedWriter writer = Files.newWriter(destination, Charsets.UTF_8); +// try { +// result.store(writer, "Generated by " + getClass().getName()); +// writer.close(); +// } finally { +// IOUtils.closeQuietly(writer); +// } +// } +// } - File destination = getDbConfigurationPath(); +// protected void generateDbEnumerationConfiguration(boolean force) throws IOException { +// +// File destination = getDbEnumerationPath(); +// +// if (force || !destination.exists()) { +// +// // load enumeration mapping from classpath (enumerations.properties) +// +// if (log.isInfoEnabled()) { +// log.info("Generate " + destination + " from classpath."); +// } +// +// Properties result = new Properties(); +// InputStream in = getClass().getResourceAsStream("/tutti-db-enumerations.properties"); +// try { +// result.load(in); +// in.close(); +// } finally { +// IOUtils.closeQuietly(in); +// } +// +// // replace some values from ApplicationConfig +// +// +// // write result file at destination +// +// BufferedWriter writer = +// Files.newWriter(destination, Charsets.UTF_8); +// try { +// result.store(writer, "Generated by " + getClass().getName()); +// writer.close(); +// } finally { +// IOUtils.closeQuietly(writer); +// } +// } +// } - if (force || !destination.exists()) { - - // load db configuration template (tutti-db.properties) - - if (log.isInfoEnabled()) { - log.info("Generate " + destination + " from classpath."); - } - Properties result = new Properties(); - InputStream in = getClass().getResourceAsStream("/tutti-db-conf.properties"); - try { - result.load(in); - in.close(); - } finally { - IOUtils.closeQuietly(in); - } - - // replace some values from ApplicationConfig - - result.put("dataSource.jdbc.driver", getJdbcDriver().getName()); - result.put("dataSource.jdbc.username", getJdbcUsername()); - result.put("dataSource.jdbc.password", getJdbcPassword()); - result.put("dataSource.jdbc.url", getJdbcUrl()); - result.put("hibernate.dialect", getHibernateDialect().getName()); - result.put("hibernate.show_sql", isHibernateShowSql() + ""); - result.put("hibernate.format_sql", isHibernateFormatSql() + ""); - result.put("hibernate.use_sql_comments", isHibernateUseSqlComment() + ""); - result.put("ehcache.disk.store.dir", getCacheDirectory().getAbsolutePath()); - - // write result file at destination - - BufferedWriter writer = Files.newWriter(destination, Charsets.UTF_8); - try { - result.store(writer, "Generated by " + getClass().getName()); - writer.close(); - } finally { - IOUtils.closeQuietly(writer); - } - } - } - - protected void generateDbEnumerationConfiguration(boolean force) throws IOException { - - File destination = getDbEnumerationPath(); - - if (force || !destination.exists()) { - - // load enumeration mapping from classpath (enumerations.properties) - - if (log.isInfoEnabled()) { - log.info("Generate " + destination + " from classpath."); - } - - Properties result = new Properties(); - InputStream in = getClass().getResourceAsStream("/tutti-db-enumerations.properties"); - try { - result.load(in); - in.close(); - } finally { - IOUtils.closeQuietly(in); - } - - // replace some values from ApplicationConfig - - - // write result file at destination - - BufferedWriter writer = - Files.newWriter(destination, Charsets.UTF_8); - try { - result.store(writer, "Generated by " + getClass().getName()); - writer.close(); - } finally { - IOUtils.closeQuietly(writer); - } - } - } - - public Properties getDbEnumerations() throws IOException { - Properties result = new Properties(); - BufferedReader in = Files.newReader(getDbEnumerationPath(), Charsets.UTF_8); - try { - result.load(in); - in.close(); - } finally { - IOUtils.closeQuietly(in); - } - return result; - } +// public Properties getDbEnumerations() throws IOException { +// Properties result = new Properties(); +// BufferedReader in = Files.newReader(getDbEnumerationPath(), Charsets.UTF_8); +// try { +// result.load(in); +// in.close(); +// } finally { +// IOUtils.closeQuietly(in); +// } +// return result; +// } } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/TuttiConfigurationOption.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/TuttiConfigurationOption.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/TuttiConfigurationOption.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -123,18 +123,6 @@ "${tutti.data.directory}/protocol", File.class), - DB_CONFIGURATION_PATH( - "tutti.persistence.db.configurationPath", - n("tutti.config.option.persistence.db.configurationPath.description"), - "${tutti.data.directory}/dbconf/conf.properties", - File.class), - - DB_ENUMERATION_PATH( - "tutti.persistence.db.enumerationPath", - n("tutti.config.option.persistence.db.enumerationPath.description"), - "${tutti.data.directory}/dbconf/enumerations-v3.properties", - File.class), - DB_NAME( "tutti.persistence.db.name", n("tutti.config.option.persistence.db.name.description"), Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -61,664 +61,6 @@ AccidentalBatchPersistenceService, IndividualObservationBatchPersistenceService { - //------------------------------------------------------------------------// - //-- Technical methods --// - //------------------------------------------------------------------------// - String getImplementationName(); -// /** -// * To clear all caches. -// * -// * @since 1.0.1 -// */ -// void clearAllCaches(); -// -//// /** -//// * @return the enumeration file (where all constant mapping are defined). -//// * @since 2.4 -//// */ -//// TuttiEnumerationFile getEnumerationFile(); -// -// /** -// * To invoke the given call code. -// * -// * Note: this is mainly to execute a code in a single -// * transaction. -// * -// * @param call call to invoke -// * @param <V> return type -// * @return the return of the call -// * @since 2.4 -// */ -// @Transactional(readOnly = false) -// <V> V invoke(Callable<V> call); -// -// Version getDbVersion(); -// -// Version getApplicationVersion(); -// -// void updateSchema(); -// -// void sanityDb(); - -// //------------------------------------------------------------------------// -// //-- Referential methods --// -// //------------------------------------------------------------------------// -// -// /** -// * @return all available zones (used by a {@link Program}. -// * @see Program#getZone() -// * @see Program#setZone(TuttiLocation) -// * @since 0.3 -// */ -// List<TuttiLocation> getAllProgramZone(); -// -// /** -// * @return all countries. -// * @since 0.1 -// */ -// List<TuttiLocation> getAllCountry(); -// -// /** -// * @return all harbours (used by a {@link Cruise}). -// * @see {@link Cruise#getDepartureLocation()} -// * @see {@link Cruise#setDepartureLocation(TuttiLocation)} -// * @see {@link Cruise#getReturnLocation()} -// * @see {@link Cruise#setReturnLocation(TuttiLocation)} -// * @since 1.2 -// */ -// -// List<TuttiLocation> getAllHarbour(); -// -// /** -// * Get the list of location of type strata that match the given zone id. -// * -// * @param zoneId id of the parent zone (can not be null) -// * @return the stratas with given zone id as location parent -// * @since 1.0 -// */ -// List<TuttiLocation> getAllFishingOperationStrata(String zoneId); -// -// /** -// * Get the list of location of type substra that match the given zone id or -// * if not null the given strata id. -// * -// * @param zoneId id of the parent zone (can not be null) -// * @param strataId id of the optional parent strata -// * @return the list of localite with given zone id as location parent / or strata -// * @since 1.0 -// */ -// List<TuttiLocation> getAllFishingOperationSubStrata(String zoneId, String strataId); -// -// /** -// * Get the list of location of type substra that match the given zone id or -// * if not null the given strata id or if not null the given substrata id if -// * not null. -// * -// * @param zoneId id of the parent zone (can not be null) -// * @param strataId id of the optional parent strata -// * @param subStrataId id of the optional parent subStrata -// * @return the list of localite with given zone id as location parent / or strata or substrata -// * @since 1.0 -// */ -// List<TuttiLocation> getAllFishingOperationLocation(String zoneId, String strataId, String subStrataId); -// -// /** -// * @return all scientific vessels (used by a {@link Cruise}). -// * @see Cruise#getVessel() -// * @see Cruise#setVessel(Vessel) -// * @since 0.3 -// */ -// List<Vessel> getAllScientificVessel(); -// -// /** -// * @return all commercial vessels (used by a {@link Cruise}). -// * @see Cruise#getVessel() -// * @see Cruise#setVessel(Vessel) -// * @since 0.3 -// */ -// List<Vessel> getAllFishingVessel(); -// -// /** -// * Get all species (referent or synonym) with with {@link Species#getSurveyCode()} -// * filled by optional protocol. -// * -// * @return all species with {@code surveyCode} filled if possible. -// * @since 0.1 -// */ -// List<Species> getAllSpecies(); -// -// /** -// * Get all {@code referent} species with {@link Species#getSurveyCode()} -// * filled by optional protocol. -// * -// * @return all species with {@code surveyCode} filled if possible. -// * @since 1.0 -// */ -// List<Species> getAllReferentSpecies(); -// -// /** -// * Obtain a species with external code as vernacular code given his referenceTaxonId. -// * -// * Note: {@link Species#getRefTaxCode()} will not be -// * filled by with method. -// * -// * @param referenceTaxonId id of the reference taxon of the species to load -// * @return the species or {@code null} if not found. -// * @see Species#getReferenceTaxonId() -// * @see Species#getVernacularCode() -// * @since 2.0 -// */ -// Species getSpeciesByReferenceTaxonIdWithVernacularCode(Integer referenceTaxonId); -// -// /** -// * @return all caracteristics of the system. -// * @since 1.0 -// */ -// List<Caracteristic> getAllCaracteristic(); -// -// /** -// * @return all caracteristics of the system with the ones which are protected. -// * @since 2.3 -// */ -// List<Caracteristic> getAllCaracteristicWithProtected(); -// -// /** -// * @return all caracteristics of the system useable for {@link SampleCategoryModel}. -// * @since 2.4 -// */ -// List<Caracteristic> getAllCaracteristicForSampleCategory(); -// -// /** -// * @return all numeric caracteristics of the system. -// * @since 1.0.2 -// */ -// List<Caracteristic> getAllNumericCaracteristic(); -// -// Caracteristic getSizeCategoryCaracteristic(); -// -// Caracteristic getSexCaracteristic(); -// -// Caracteristic getSortedUnsortedCaracteristic(); -// -// Caracteristic getMaturityCaracteristic(); -// -// Caracteristic getAgeCaracteristic(); -// -// Caracteristic getMarineLitterCategoryCaracteristic(); -// -// Caracteristic getMarineLitterSizeCategoryCaracteristic(); -// -// Caracteristic getVerticalOpeningCaracteristic(); -// -// Caracteristic getHorizontalOpeningWingCaracteristic(); -// -// Caracteristic getHorizontalOpeningDoorCaracteristic(); -// -// Caracteristic getDeadOrAliveCaracteristic(); -// -// Caracteristic getPmfmIdCaracteristic(); -// -// Caracteristic getWeightMeasuredCaracteristic(); -// -// Caracteristic getCaracteristic(Integer pmfmId); -// -// Predicate<SpeciesAbleBatch> getVracBatchPredicate(); -// -// boolean isVracBatch(SpeciesAbleBatch speciesBatch); -// -// boolean isTemporary(TuttiReferentialEntity entity); -// -// List<Gear> getAllScientificGear(); -// -// List<Gear> getAllFishingGear(); -// -// List<Person> getAllPerson(); -// -// /** -// * @return all object type -// * @since 1.0.2 -// */ -// List<ObjectType> getAllObjectType(); -// -// Person getPerson(Integer personId); -// -// Gear getGear(Integer gearCode); -// -// Vessel getVessel(String vesselCode); -// -// ObjectType getObjectType(String objectTypeCode); -// -// /** -// * Import given temporary species. -// * -// * @param species species to import -// * @since 1.0 -// */ -// @Transactional(readOnly = false) -// List<Species> importTemporarySpecies(List<Species> species); -// -// /** -// * Import given temporary vessels. -// * -// * @param vessels vessels to import -// * @since 1.0 -// */ -// @Transactional(readOnly = false) -// List<Vessel> importTemporaryVessel(List<Vessel> vessels); -// -// /** -// * Import given temporary persons. -// * -// * @param persons persons to import -// * @since 1.0 -// */ -// @Transactional(readOnly = false) -// List<Person> importTemporaryPerson(List<Person> persons); -// -// /** -// * Import given temporary gears. -// * -// * @param gears gears to import -// * @since 1.0 -// */ -// @Transactional(readOnly = false) -// List<Gear> importTemporaryGear(List<Gear> gears); - - //------------------------------------------------------------------------// - //-- Attachments methods --// - //------------------------------------------------------------------------// - -// /** -// * Get all attachments for the given object {@code objectId} of type. -// * -// * @param objectType type of attachment (see {@link AttachementObjectTypeEnum}) -// * @param objectId id of the object -// * @return list of all attachments for the given {@code objectId}. -// * @see AttachementObjectTypeEnum -// */ -// List<Attachment> getAllAttachments(AttachementObjectTypeEnum objectType, -// Integer objectId); -// -// /** -// * Get the file of the given {@code attachmentId}. -// * -// * @param attachmentId id of the attachment -// * @return the file for the given attachment -// */ -// File getAttachmentFile(String attachmentId); -// -// /** -// * Creates the given attachment. -// * -// * @param attachment attachment to create -// * @param file file to store in this attachment -// * @return the attachment with his id. -// */ -// @Transactional(readOnly = false) -// Attachment createAttachment(Attachment attachment, File file); -// -// /** -// * Saves the given attachment. -// * -// * @param attachment attachment to create -// * @return the attachment with his id. -// */ -// @Transactional(readOnly = false) -// Attachment saveAttachment(Attachment attachment); -// -// /** -// * Deletes the given attachment given his id. -// * -// * @param attachmentId id of the attachment to delete -// */ -// @Transactional(readOnly = false) -// void deleteAttachment(String attachmentId); - - //------------------------------------------------------------------------// - //-- Program methods --// - //------------------------------------------------------------------------// - -// /** -// * Get all programs. -// * -// * Note: For each program, his zone is loaded. -// * -// * @return the list of programs found in db. -// */ -// List<Program> getAllProgram(); -// -// /** -// * Get the program for the given {@code id}. -// * -// * Note: his zone is loaded. -// * -// * @param id id of the program to load -// * @return the loaded program -// */ -// Program getProgram(String id); -// -// @Transactional(readOnly = false) -// Program createProgram(Program bean); -// -// @Transactional(readOnly = false) -// Program saveProgram(Program bean); - - //------------------------------------------------------------------------// - //-- Cruise methods --// - //------------------------------------------------------------------------// - -// List<Cruise> getAllCruise(String programId); -// -// Cruise getCruise(String id); -// -// @Transactional(readOnly = false) -// Cruise createCruise(Cruise bean); -// -// @Transactional(readOnly = false) -// Cruise saveCruise(Cruise bean, boolean updateVessel, boolean updateGear); -// -// CaracteristicMap getGearCaracteristics(String cruiseId, -// String gearId, -// short rankOrder); -// -// boolean isOperationUseGears(Integer cruiseId, Collection<Gear> gears); -// -// @Transactional(readOnly = false) -// void saveGearCaracteristics(Gear gear, Cruise cruise); - - //------------------------------------------------------------------------// - //-- Protocol methods --// - //------------------------------------------------------------------------// - -// /** -// * The protocol used by the persistence lay (used to consolidate entites). -// * -// * @return The protocol used by the persistence layer -// * @see #setProtocol(TuttiProtocol) -// * @since 2.6 -// */ -// TuttiProtocol getProtocol(); -// -// /** -// * Set the protocol to use by the persistence layer. -// * -// * @param protocol the new protocol to use (can be null) -// * @see #getProtocol() -// * @since 2.6 -// */ -// void setProtocol(TuttiProtocol protocol); -// -// List<String> getAllProtocolNames(); -// -// List<TuttiProtocol> getAllProtocol(); -// -// boolean isProtocolExist(String id); -// -// TuttiProtocol getProtocol(String id); -// -// @Transactional(readOnly = false) -// TuttiProtocol createProtocol(TuttiProtocol bean); -// -// @Transactional(readOnly = false) -// TuttiProtocol saveProtocol(TuttiProtocol bean); -// -// @Transactional(readOnly = false) -// void deleteProtocol(String id); - - //------------------------------------------------------------------------// - //-- FishingOperation methods --// - //------------------------------------------------------------------------// - -// int getFishingOperationCount(String cruiseId); -// -// List<String> getAllFishingOperationIds(String cruiseId); -// -// List<FishingOperation> getAllFishingOperation(String cruiseId); -// -// FishingOperation getFishingOperation(String id); -// -// List<Vessel> getFishingOperationSecondaryVessel(String fishingOperationId); -// -// @Transactional(readOnly = false) -// FishingOperation createFishingOperation(FishingOperation bean); -// -// @Transactional(readOnly = false) -// FishingOperation saveFishingOperation(FishingOperation bean); -// -// @Transactional(readOnly = false) -// void deleteFishingOperation(String id); - - //------------------------------------------------------------------------// - //-- CatchBatch methods --// - //------------------------------------------------------------------------// - -// /** -// * @param operationId id of the fishing operation -// * @return {@code true} if there is a catchBatch for the given fishing -// * operation, {@code false} otherwise. -// * @since 2.2 -// */ -// boolean isFishingOperationWithCatchBatch(String operationId); -// -// /** -// * Get the catchBatch from the fishing Operation id. -// * -// * If batch model is not compatible with Tutti then a -// * {@link InvalidBatchModelException} will be thrown. -// * -// * @param id id of the fihsing operation -// * @return found catchbatch -// * @throws InvalidBatchModelException if batch model is not compatible -// * with Tutti. -// */ -// CatchBatch getCatchBatchFromFishingOperation(String id) throws InvalidBatchModelException; -// -// /** -// * Create the given CatchBatch and return it. -// * -// * @param bean catchBatch to create -// * @return created catchBatch -// */ -// @Transactional(readOnly = false) -// CatchBatch createCatchBatch(CatchBatch bean); -// -// /** -// * Save the given catchBatch and return it. -// * -// * @param bean batch to save -// * @return the saved catchBatch -// */ -// @Transactional(readOnly = false) -// CatchBatch saveCatchBatch(CatchBatch bean); - - //------------------------------------------------------------------------// - //-- Species Batch methods --// - //------------------------------------------------------------------------// - -// /** -// * Get the batch parent of all root {@link SpeciesBatch} for the given -// * fishing operation. -// * -// * Note: All childs of the batch should be loaded here. -// * -// * @param fishingOperationId if of the fishing operation to seek -// * @param sampleCategoryModel [optional] sample category model to check -// * @return the list of root {@link SpeciesBatch} -// * @throws InvalidBatchModelException if batch does not respect the sample category model -// * @since 2.4 -// */ -// BatchContainer<SpeciesBatch> getRootSpeciesBatch(String fishingOperationId, -// SampleCategoryModel sampleCategoryModel) throws InvalidBatchModelException; -// -// @Transactional(readOnly = false) -// SpeciesBatch createSpeciesBatch(SpeciesBatch bean, String parentBatchId); -// -// @Transactional(readOnly = false) -// SpeciesBatch saveSpeciesBatch(SpeciesBatch bean); -// -// @Transactional(readOnly = false) -// void deleteSpeciesBatch(String id); -// -// @Transactional(readOnly = false) -// void deleteSpeciesSubBatch(String id); -// -// @Transactional(readOnly = false) -// void changeSpeciesBatchSpecies(String batchId, Species species); -// -// /** -// * Get all frequencies for the given species batch. -// * -// * @param speciesBatchId the id of the species batch to seek. -// * @return the list of frequencies for the given specues batch id -// * @since 1.0 -// */ -// List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency(String speciesBatchId); -// -// /** -// * Get all frequencies for the given root species batch container. -// * -// * @param batchContainer the root batch containter -// * @return the list of species frequencies indexed by their species -// * @since 3.3 -// */ -// Multimap<Species, SpeciesBatchFrequency> getAllSpeciesBatchFrequencyForBatch(BatchContainer<SpeciesBatch> batchContainer); -// -// /** -// * Save all given {@link SpeciesBatchFrequency} into the given -// * {@code speciesBatchId}. If some are not existing then creates them. -// * -// * Note: This will as a side effect remove all previous frequency for this species batch. -// * -// * @param speciesBatchId id of the {@link SpeciesBatch} to use -// * @param frequencies list of frequencies to create or update -// * @return the persisted list of frequencies -// * @since 1.0 -// */ -// @Transactional(readOnly = false) -// List<SpeciesBatchFrequency> saveSpeciesBatchFrequency(String speciesBatchId, -// List<SpeciesBatchFrequency> frequencies); - - //------------------------------------------------------------------------// - //-- Benthos Batch methods --// - //------------------------------------------------------------------------// - -// /** -// * Get the batch parent of all root {@link BenthosBatch} for the given -// * fishing operation. -// * -// * Note: All childs of the batch should be loaded here. -// * -// * @param fishingOperationId if of the fishing operation to seek -// * @param sampleCategoryModel [optional] sample category model to check -// * @return the list of root {@link BenthosBatch} -// * @throws InvalidBatchModelException if batch does not respect the sample category model -// * @since 2.4 -// */ -// BatchContainer<BenthosBatch> getRootBenthosBatch(String fishingOperationId, -// SampleCategoryModel sampleCategoryModel) throws InvalidBatchModelException; -// -// @Transactional(readOnly = false) -// BenthosBatch createBenthosBatch(BenthosBatch bean, String parentBatchId); -// -// @Transactional(readOnly = false) -// BenthosBatch saveBenthosBatch(BenthosBatch bean); -// -// @Transactional(readOnly = false) -// void deleteBenthosBatch(String id); -// -// @Transactional(readOnly = false) -// void deleteBenthosSubBatch(String id); -// -// @Transactional(readOnly = false) -// void changeBenthosBatchSpecies(String batchId, Species species); -// -// /** -// * Get all frequencies for the given species batch. -// * -// * @param benthosBatchId the id of the species batch to seek. -// * @return the list of frequencies for the given specues batch id -// * @since 1.0 -// */ -// List<BenthosBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId); -// -// /** -// * Get all frequencies for the given root benthos batch container. -// * -// * @param batchContainer the root batch containter -// * @return the list of benthos frequencies indexed by their species -// * @since 3.3 -// */ -// Multimap<Species, BenthosBatchFrequency> getAllBenthosBatchFrequencyForBatch(BatchContainer<BenthosBatch> batchContainer); -// -// /** -// * Save all given {@link BenthosBatchFrequency} into the given -// * {@code benthosBatchId}. If some are not existing then creates them. -// * -// * Note: This will as a side effect remove all previous frequency for this species batch. -// * -// * @param benthosBatchId id of the {@link BenthosBatch} to use -// * @param frequencies list of frequencies to create or update -// * @return the persisted list of frequencies -// * @since 1.0 -// */ -// @Transactional(readOnly = false) -// List<BenthosBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, -// List<BenthosBatchFrequency> frequencies); - - //------------------------------------------------------------------------// - //-- MarineLitter Batch methods --// - //------------------------------------------------------------------------// - -// /** -// * Get the batch parent of all root {@link MarineLitterBatch} for the given -// * fishing operation. -// * -// * Note: All childs of the batch should be loaded here. -// * -// * @param fishingOperationId if of the fishing operation to seek -// * @return the list of root {@link MarineLitterBatch} -// * @since 1.3 -// */ -// BatchContainer<MarineLitterBatch> getRootMarineLitterBatch(String fishingOperationId); -// -// @Transactional(readOnly = false) -// MarineLitterBatch createMarineLitterBatch(MarineLitterBatch bean); -// -// @Transactional(readOnly = false) -// MarineLitterBatch saveMarineLitterBatch(MarineLitterBatch bean); -// -// @Transactional(readOnly = false) -// void deleteMarineLitterBatch(String id); - - //------------------------------------------------------------------------// - //-- Accidental Batch methods --// - //------------------------------------------------------------------------// - -// List<AccidentalBatch> getAllAccidentalBatch(String fishingOperationId); -// -// @Transactional(readOnly = false) -// AccidentalBatch createAccidentalBatch(AccidentalBatch bean); -// -// @Transactional(readOnly = false) -// AccidentalBatch saveAccidentalBatch(AccidentalBatch bean); -// -// @Transactional(readOnly = false) -// void deleteAccidentalBatch(String id); - - //------------------------------------------------------------------------// - //-- IndividualObservation Batch methods --// - //------------------------------------------------------------------------// - -// List<IndividualObservationBatch> getAllIndividualObservationBatch(String fishingOperationId); -// -// @Transactional(readOnly = false) -// IndividualObservationBatch createIndividualObservationBatch(IndividualObservationBatch bean); -// -// @Transactional(readOnly = false) -// IndividualObservationBatch saveIndividualObservationBatch(IndividualObservationBatch bean); -// -// @Transactional(readOnly = false) -// void deleteIndividualObservationBatch(String id); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -115,9 +115,6 @@ @Resource(name = "benthosBatchPersistenceService") protected BenthosBatchPersistenceService benthosBatchService; -// @Resource(name = "commonBatchPersistenceService") -// protected CommonBatchPersistenceService commonBatchService; - @Resource(name = "marineLitterBatchPersistenceService") protected MarineLitterBatchPersistenceService marineLitterBatchService; @@ -177,6 +174,11 @@ } @Override + public void clearCache(String cacheName) { + technicalPersistenceService.clearCache(cacheName); + } + + @Override public void init() { if (log.isInfoEnabled()) { log.info("Open persistence driver " + getImplementationName()); @@ -188,7 +190,6 @@ catchBatchService.init(); speciesBatchService.init(); benthosBatchService.init(); -// commonBatchService.init(); marineLitterBatchService.init(); accidentalBatchService.init(); individualObservationBatchService.init(); @@ -215,13 +216,12 @@ catchBatchService.close(); speciesBatchService.close(); benthosBatchService.close(); -// commonBatchService.close(); marineLitterBatchService.close(); accidentalBatchService.close(); individualObservationBatchService.close(); protocolService.close(); attachmentService.close(); - TuttiPersistenceServiceLocator.close(); + TuttiPersistenceServiceLocator.shutdownTutti(); } } } @@ -366,8 +366,8 @@ } @Override - public Caracteristic getHorizontalOpeningWingCaracteristic() { - return referentialService.getHorizontalOpeningWingCaracteristic(); + public Caracteristic getHorizontalOpeningWingsCaracteristic() { + return referentialService.getHorizontalOpeningWingsCaracteristic(); } @Override Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -108,6 +108,10 @@ public void clearAllCaches() { throw notImplemented(); } + @Override + public void clearCache(String cacheName) { + throw notImplemented(); + } @Override public List<TuttiLocation> getAllProgramZone() { @@ -225,7 +229,7 @@ } @Override - public Caracteristic getHorizontalOpeningWingCaracteristic() { + public Caracteristic getHorizontalOpeningWingsCaracteristic() { throw notImplemented(); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -30,8 +30,8 @@ import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.hibernate.Query; +import org.hibernate.Session; import org.hibernate.SessionFactory; -import org.hibernate.classic.Session; import org.hibernate.type.Type; import javax.annotation.Resource; Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceImpl.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -33,11 +33,13 @@ import fr.ifremer.adagio.core.dao.data.fishingArea.FishingArea2RegulationLocationDao; import fr.ifremer.adagio.core.dao.data.fishingArea.FishingArea2RegulationLocationPK; import fr.ifremer.adagio.core.dao.data.fishingArea.FishingAreaDao; +import fr.ifremer.adagio.core.dao.data.fishingArea.FishingAreaImpl; import fr.ifremer.adagio.core.dao.data.measure.GearPhysicalMeasurement; import fr.ifremer.adagio.core.dao.data.measure.GearUseMeasurement; import fr.ifremer.adagio.core.dao.data.measure.VesselUseMeasurement; import fr.ifremer.adagio.core.dao.data.operation.FishingOperationDao; import fr.ifremer.adagio.core.dao.data.operation.Operation; +import fr.ifremer.adagio.core.dao.data.operation.OperationImpl; import fr.ifremer.adagio.core.dao.data.operation.OperationVesselAssociation; import fr.ifremer.adagio.core.dao.data.operation.OperationVesselAssociationDao; import fr.ifremer.adagio.core.dao.data.operation.OperationVesselAssociationPK; @@ -575,8 +577,8 @@ if (CollectionUtils.isNotEmpty(fishingAreas)) { for (FishingArea fishingArea : fishingAreas) { fishingArea.setProduce(null); - fishingArea2RegulationLocationDao.remove(fishingArea.getRegulationLocation()); - fishingArea.getRegulationLocation().clear(); + fishingArea2RegulationLocationDao.remove(fishingArea.getRegulationLocations()); + fishingArea.getRegulationLocations().clear(); } getCurrentSession().flush(); fishingAreaDao.remove(fishingAreas); @@ -845,7 +847,7 @@ } else { fishingArea = gearUseFeatures.getFishingAreas().iterator().next(); - notChangedRegulationLocation = Lists.newArrayList(fishingArea.getRegulationLocation()); + notChangedRegulationLocation = Lists.newArrayList(fishingArea.getRegulationLocations()); // Reset all other fishing areas } @@ -1136,14 +1138,14 @@ FishingArea2RegulationLocation fa2rl = FishingArea2RegulationLocation.Factory.newInstance(); FishingArea2RegulationLocationPK fa2rlPK = new FishingArea2RegulationLocationPK(); fa2rl.setFishingArea2RegulationLocationPk(fa2rlPK); - fa2rlPK.setFishingArea(fishingArea); + fa2rlPK.setFishingArea((FishingAreaImpl) fishingArea); fa2rlPK.setLocation(load(LocationImpl.class, source.getStrata().getIdAsInt())); notChangedRegulationLocation.remove(fa2rl); - if (fishingArea.getRegulationLocation() == null) { - fishingArea.setRegulationLocation(Sets.newHashSet(fa2rl)); + if (fishingArea.getRegulationLocations() == null) { + fishingArea.setRegulationLocations(Sets.newHashSet(fa2rl)); } else { - fishingArea.getRegulationLocation().add(fa2rl); + fishingArea.getRegulationLocations().add(fa2rl); } if (statisticalLocationId == null) { statisticalLocationId = source.getStrata().getIdAsInt(); @@ -1155,15 +1157,15 @@ FishingArea2RegulationLocation fa2rl = FishingArea2RegulationLocation.Factory.newInstance(); FishingArea2RegulationLocationPK fa2rlPK = new FishingArea2RegulationLocationPK(); fa2rl.setFishingArea2RegulationLocationPk(fa2rlPK); - fa2rlPK.setFishingArea(fishingArea); + fa2rlPK.setFishingArea((FishingAreaImpl) fishingArea); fa2rlPK.setLocation(load(LocationImpl.class, source.getSubStrata().getIdAsInt())); notChangedRegulationLocation.remove(fa2rl); - if (fishingArea.getRegulationLocation() == null) { - fishingArea.setRegulationLocation(Sets.newHashSet(fa2rl)); + if (fishingArea.getRegulationLocations() == null) { + fishingArea.setRegulationLocations(Sets.newHashSet(fa2rl)); } else { - fishingArea.getRegulationLocation().add(fa2rl); + fishingArea.getRegulationLocations().add(fa2rl); } if (statisticalLocationId == null) { statisticalLocationId = source.getSubStrata().getIdAsInt(); @@ -1175,28 +1177,28 @@ FishingArea2RegulationLocation fa2rl = FishingArea2RegulationLocation.Factory.newInstance(); FishingArea2RegulationLocationPK fa2rlPK = new FishingArea2RegulationLocationPK(); fa2rl.setFishingArea2RegulationLocationPk(fa2rlPK); - fa2rlPK.setFishingArea(fishingArea); + fa2rlPK.setFishingArea((FishingAreaImpl) fishingArea); fa2rlPK.setLocation(load(LocationImpl.class, source.getLocation().getIdAsInt())); notChangedRegulationLocation.remove(fa2rl); - if (fishingArea.getRegulationLocation() == null) { - fishingArea.setRegulationLocation(Sets.newHashSet(fa2rl)); + if (fishingArea.getRegulationLocations() == null) { + fishingArea.setRegulationLocations(Sets.newHashSet(fa2rl)); } else { - fishingArea.getRegulationLocation().add(fa2rl); + fishingArea.getRegulationLocations().add(fa2rl); } if (statisticalLocationId == null) { statisticalLocationId = source.getLocation().getIdAsInt(); } } - fishingArea.getRegulationLocation().removeAll(notChangedRegulationLocation); + fishingArea.getRegulationLocations().removeAll(notChangedRegulationLocation); // Fishing Area location (should be a statistical location) if (statisticalLocationId == null) { gearUseFeatures.getFishingAreas().remove(fishingArea); //Nothing to do : a gearUseFeatures.getFishingAreas().clear() has been done before - if (fishingArea.getRegulationLocation() != null) { - fishingArea.getRegulationLocation().clear(); + if (fishingArea.getRegulationLocations() != null) { + fishingArea.getRegulationLocations().clear(); } } else if (statisticalLocationId != null) { fishingArea.setLocation(load(LocationImpl.class, statisticalLocationId)); @@ -1388,10 +1390,9 @@ for (String vesselCode : vesselCodes) { OperationVesselAssociation ova = null; - OperationVesselAssociationPK ovaPK = - OperationVesselAssociationPK.Factory.newInstance(); + OperationVesselAssociationPK ovaPK = new OperationVesselAssociationPK(); ovaPK.setVessel(load(VesselImpl.class, vesselCode)); - ovaPK.setOperation(target); + ovaPK.setOperation((OperationImpl) target); // If vessel is equal as cruise vessel : do note store any VesselOperationAssociation entity if (vesselCode.equals(target.getVessel().getCode())) { Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceService.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -26,7 +26,6 @@ import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; -import org.springframework.cache.annotation.CacheEvict; import java.util.List; @@ -54,7 +53,6 @@ * @see #getProtocol() * @since 2.6 */ - @CacheEvict(value = {"species", "referentSpecies", "referentSpeciesById", "referentSpeciesByIdVernacular"}, allEntries = true) void setProtocol(TuttiProtocol protocol); boolean isProtocolExist(String id); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceServiceImpl.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -25,7 +25,6 @@ */ import com.google.common.collect.Lists; -import org.nuiton.jaxx.application.ApplicationIOUtil; import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.entities.protocol.SpeciesProtocol; import fr.ifremer.tutti.persistence.entities.protocol.SpeciesProtocols; @@ -34,10 +33,12 @@ import org.apache.commons.io.FileUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; +import org.nuiton.jaxx.application.ApplicationIOUtil; import org.nuiton.util.beans.Binder; import org.nuiton.util.beans.BinderFactory; import org.springframework.stereotype.Service; +import javax.annotation.Resource; import java.io.File; import java.util.Collection; import java.util.Collections; @@ -61,6 +62,9 @@ public static TuttiProtocol sharedProtocol; + @Resource(name = "technicalPersistenceService") + protected TechnicalPersistenceService technicalService; + public TuttiProtocol getProtocol() { return sharedProtocol; } @@ -70,6 +74,19 @@ log.debug("Set shared protocol: " + protocol); } sharedProtocol = protocol; + + try { + technicalService.clearCache("species"); + technicalService.clearCache("referentSpecies"); + technicalService.clearCache("referentSpeciesById"); + technicalService.clearCache("referentSpeciesByIdVernacula"); + } catch (Exception e) { + + //FIXME This + if (log.isErrorEnabled()) { + log.error("Could not clear caches", e); + } + } } @Override Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -241,7 +241,7 @@ Caracteristic getVerticalOpeningCaracteristic(); - Caracteristic getHorizontalOpeningWingCaracteristic(); + Caracteristic getHorizontalOpeningWingsCaracteristic(); Caracteristic getHorizontalOpeningDoorCaracteristic(); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -628,8 +628,8 @@ } @Override - public Caracteristic getHorizontalOpeningWingCaracteristic() { - Integer pmfmId = enumeration.PMFM_ID_HORIZONTAL_OPENING_WING; + public Caracteristic getHorizontalOpeningWingsCaracteristic() { + Integer pmfmId = enumeration.PMFM_ID_HORIZONTAL_OPENING_WINGS; Caracteristic result = thisService.getCaracteristic(pmfmId); return result; } @@ -772,7 +772,8 @@ null, source.getInternationalRegistrationCode(), registrationLocationId, source.getName(), - vesselTypeId); + vesselTypeId, + true); // Fill the result bean Vessel result = Vessels.newVessel(); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -30,6 +30,8 @@ */ void clearAllCaches(); + void clearCache(String cacheName); + /** * To invoke the given call code. * Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -5,11 +5,14 @@ import fr.ifremer.adagio.core.dao.technical.VersionNotFoundException; import fr.ifremer.adagio.core.service.technical.CacheService; import fr.ifremer.adagio.core.service.technical.sanity.DatabaseSanityService; +import net.sf.ehcache.Ehcache; +import net.sf.ehcache.Status; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.nuiton.jaxx.application.ApplicationTechnicalException; import org.nuiton.util.Version; import org.nuiton.util.VersionUtil; +import org.springframework.cache.Cache; import org.springframework.stereotype.Service; import javax.annotation.Resource; @@ -97,4 +100,15 @@ public void clearAllCaches() { cacheService.clearAllCaches(); } + + @Override + public void clearCache(String cacheName) { + Cache cache = cacheService.getCache(cacheName); + if (cache != null) { + Ehcache nativeCache = (Ehcache) cache.getNativeCache(); + if (Status.STATUS_ALIVE.equals(nativeCache.getStatus())) { + cacheService.clearCache(cacheName); + } + } + } } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiEnumerationFile.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -44,265 +44,265 @@ */ public class TuttiEnumerationFile { - @Value("${GearClassificationId.SCIENTIFIC_CRUISE}") + @Value("${adagio.enumeration.GearClassificationId.SCIENTIFIC_CRUISE}") public final Integer GEAR_CLASSIFICIATION_ID_SCIENTIFIC = null; - @Value("${GearClassificationId.FAO}") + @Value("${adagio.enumeration.GearClassificationId.FAO}") public final Integer GEAR_CLASSIFICIATION_ID_FISHING = null; - @Value("${LocationClassificationId.TERRITORIAL}") + @Value("${adagio.enumeration.LocationClassificationId.TERRITORIAL}") public final Integer LOCATION_CLASSIFICATION_ID_TERRITORIAL = null; - @Value("${LocationClassificationId.SECTOR}") + @Value("${adagio.enumeration.LocationClassificationId.SECTOR}") public final Integer LOCATION_CLASSIFICATION_ID_SECTOR = null; - @Value("${LocationLabel.FRANCE}") + @Value("${adagio.enumeration.LocationLabel.FRANCE}") public final String LOCATION_LABEL_DEFAULT_COUNTRY = null; - @Value("${LocationLevelId.PAYS_ISO3}") + @Value("${adagio.enumeration.LocationLevelId.PAYS_ISO3}") public final Integer LOCATION_LEVEL_ID_COUNTRY = null; - @Value("${LocationLevelId.PORT}") + @Value("${adagio.enumeration.LocationLevelId.PORT}") public final Integer LOCATION_LEVEL_ID_HARBOUR = null; - @Value("${LocationLevelId.LOCALITE}") + @Value("${adagio.enumeration.LocationLevelId.SCIENTIFIC_CRUISE_LOCALITE}") public final Integer LOCATION_LEVEL_ID_LOCALITE = null; - @Value("${LocationLevelId.PROGRAM}") + @Value("${adagio.enumeration.LocationLevelId.SCIENTIFIC_CRUISE_PROGRAM}") public final Integer LOCATION_LEVEL_ID_PROGRAM = null; - @Value("${LocationLevelId.STRATA}") + @Value("${adagio.enumeration.LocationLevelId.SCIENTIFIC_CRUISE_STRATA}") public final Integer LOCATION_LEVEL_ID_STRATA = null; - @Value("${LocationLevelId.SUB_STRATA}") + @Value("${adagio.enumeration.LocationLevelId.SCIENTIFIC_CRUISE_SUB_STRATA}") public final Integer LOCATION_LEVEL_ID_SUB_STRATA = null; - @Value("${ParameterCode.AGE}") + @Value("${adagio.enumeration.ParameterCode.AGE}") public final String PARAMETER_CODE_AGE = null; - @Value("${ParameterCode.WEIGHT}") + @Value("${adagio.enumeration.ParameterCode.WEIGHT}") public final String PARAMETER_CODE_WEIGHT = null; - @Value("${PmfmId.SIZE_CATEGORY}") + @Value("${adagio.enumeration.PmfmId.SIZE_CATEGORY}") public final Integer PMFM_ID_SIZE_CATEGORY = null; - @Value("${PmfmId.SEX}") + @Value("${adagio.enumeration.PmfmId.SEX}") public final Integer PMFM_ID_SEX = null; - @Value("${PmfmId.SORTED_UNSORTED}") + @Value("${adagio.enumeration.PmfmId.SORTED_UNSORTED}") public final Integer PMFM_ID_SORTED_UNSORTED = null; - @Value("${PmfmId.MATURITY}") + @Value("${adagio.enumeration.PmfmId.MATURITY}") public final Integer PMFM_ID_MATURITY = null; - @Value("${PmfmId.MARINE_LITTER_TYPE}") + @Value("${adagio.enumeration.PmfmId.MARINE_LITTER_TYPE}") public final Integer PMFM_ID_MARINE_LITTER_TYPE = null; - @Value("${PmfmId.MARINE_LITTER_SIZE_CATEGORY}") + @Value("${adagio.enumeration.PmfmId.MARINE_LITTER_SIZE_CATEGORY}") public final Integer PMFM_ID_MARINE_LITTER_SIZE_CATEGORY = null; - @Value("${PmfmId.SCIENTIFIC_CRUISE_SORTING_TYPE}") + @Value("${adagio.enumeration.PmfmId.SCIENTIFIC_CRUISE_SORTING_TYPE}") public final Integer PMFM_ID_SORTING_TYPE = null; - @Value("${PmfmId.SCIENTIFIC_CRUISE_SORTING_TYPE_2}") + @Value("${adagio.enumeration.PmfmId.SCIENTIFIC_CRUISE_SORTING_TYPE_2}") public final Integer PMFM_ID_SORTING_TYPE_2 = null; - @Value("${UnitId.NONE}") + @Value("${adagio.enumeration.UnitId.NONE}") public final Integer UNIT_ID_NONE = null; - @Value("${UserProfilId.OBSERVER}") + @Value("${adagio.enumeration.UserProfilId.OBSERVER}") public final Integer USER_PROFIL_ID_OBSERVER = null; - @Value("${UserProfilId.PROJECT_MEMBER}") + @Value("${adagio.enumeration.UserProfilId.PROJECT_MEMBER}") public final Integer USER_PROFIL_ID_PROJECT_MEMBER = null; - @Value("${UserProfilId.USER}") + @Value("${adagio.enumeration.UserProfilId.USER}") public final Integer USER_PROFIL_ID_USER = null; - @Value("${UserProfilId.DEPARTEMENT_PREFIX}") + @Value("${adagio.enumeration.UserProfilId.DEPARTEMENT_PREFIX}") public final String USER_PROFIL_ID_DEPARTEMENT_PREFIX = null; - @Value("${VesselTypeId.SCIENTIFIC_RESEARCH_VESSEL}") + @Value("${adagio.enumeration.VesselTypeId.SCIENTIFIC_RESEARCH_VESSEL}") public final Integer VESSEL_TYPE_ID_SCIENTIFIC = null; - @Value("${VesselTypeId.FISHING_VESSEL}") + @Value("${adagio.enumeration.VesselTypeId.FISHING_VESSEL}") public final Integer VESSEL_TYPE_ID_FISHING = null; - @Value("${LocationLevelId.RECTANGLE_STATISTIQUE_MED}") - public final Integer RECTANGLE_STATISTIQUE_MED = null; +// @Value("${adagio.enumeration.LocationLevelId.RECTANGLE_STATISTIQUE_MED}") +// public final Integer RECTANGLE_STATISTIQUE_MED = null; - @Value("${LocationLevelId.RECTANGLE_STATISTIQUE}") + @Value("${adagio.enumeration.LocationLevelId.RECTANGLE_STATISTIQUE}") public final Integer RECTANGLE_STATISTIQUE = null; - @Value("${QualitativeValueId.SORTED_VRAC}") + @Value("${adagio.enumeration.QualitativeValueId.SORTED_VRAC}") public final Integer QUALITATIVE_VRAC_ID = null; - @Value("${QualitativeValueId.SORTED_HORS_VRAC}") + @Value("${adagio.enumeration.QualitativeValueId.SORTED_HORS_VRAC}") public final Integer QUALITATIVE_HORS_VRAC_ID = null; - @Value("${QualitativeValueId.UNSORTED}") + @Value("${adagio.enumeration.QualitativeValueId.UNSORTED}") public final Integer QUALITATIVE_UNSORTED_ID = null; - @Value("${QualitativeValueId.SEX_MALE}") + @Value("${adagio.enumeration.QualitativeValueId.SEX_MALE}") public final Integer QUALITATIVE_SEX_MALE_ID = null; - @Value("${QualitativeValueId.SEX_FEMALE}") + @Value("${adagio.enumeration.QualitativeValueId.SEX_FEMALE}") public final Integer QUALITATIVE_SEX_FEMALE_ID = null; - @Value("${QualitativeValueId.SEX_UNDEFINED}") + @Value("${adagio.enumeration.QualitativeValueId.SEX_UNDEFINED}") public final Integer QUALITATIVE_SEX_UNDEFINED_ID = null; - @Value("${QualitativeValueId.MATURITY_1}") + @Value("${adagio.enumeration.QualitativeValueId.MATURITY_1}") public final Integer QUALITATIVE_MATURITY_1_ID = null; - @Value("${QualitativeValueId.MATURITY_2}") + @Value("${adagio.enumeration.QualitativeValueId.MATURITY_2}") public final Integer QUALITATIVE_MATURITY_2_ID = null; - @Value("${QualitativeValueId.MATURITY_3}") + @Value("${adagio.enumeration.QualitativeValueId.MATURITY_3}") public final Integer QUALITATIVE_MATURITY_3_ID = null; - @Value("${QualitativeValueId.MATURITY_4}") + @Value("${adagio.enumeration.QualitativeValueId.MATURITY_4}") public final Integer QUALITATIVE_MATURITY_4_ID = null; - @Value("${QualitativeValueId.MATURITY_5}") + @Value("${adagio.enumeration.QualitativeValueId.MATURITY_5}") public final Integer QUALITATIVE_MATURITY_5_ID = null; - @Value("${QualitativeValueId.SIZE_SMALL}") + @Value("${adagio.enumeration.QualitativeValueId.SIZE_SMALL}") public final Integer QUALITATIVE_SIZE_SMALL_ID = null; - @Value("${QualitativeValueId.SIZE_MEDIUM}") + @Value("${adagio.enumeration.QualitativeValueId.SIZE_MEDIUM}") public final Integer QUALITATIVE_SIZE_MEDIUM_ID = null; - @Value("${QualitativeValueId.SIZE_BIG}") + @Value("${adagio.enumeration.QualitativeValueId.SIZE_BIG}") public final Integer QUALITATIVE_SIZE_BIG_ID = null; - @Value("${QualitativeValueId.SORTING_TYPE_SPECIES}") + @Value("${adagio.enumeration.QualitativeValueId.SORTING_TYPE_SPECIES}") public final Integer QUALITATIVE_ID_SORTING_TYPE_SPECIES = null; - @Value("${QualitativeValueId.SORTING_TYPE_BENTHOS}") + @Value("${adagio.enumeration.QualitativeValueId.SORTING_TYPE_BENTHOS}") public final Integer QUALITATIVE_ID_SORTING_TYPE_BENTHOS = null; - @Value("${QualitativeValueId.SORTING_TYPE_MARINE_LITTER}") + @Value("${adagio.enumeration.QualitativeValueId.SORTING_TYPE_MARINE_LITTER}") public final Integer QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER = null; - @Value("${QualitativeValueId.SORTING_TYPE_2_ALIVE_NOT_ITEMIZED}") + @Value("${adagio.enumeration.QualitativeValueId.SORTING_TYPE_2_ALIVE_NOT_ITEMIZED}") public final Integer QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED = null; - @Value("${QualitativeValueId.SORTING_TYPE_2_INERT}") + @Value("${adagio.enumeration.QualitativeValueId.SORTING_TYPE_2_INERT}") public final Integer QUALITATIVE_ID_SORTING_TYPE_2_INERT = null; - @Value("${QualitativeValueId.SORTING_TYPE_2_ALIVE_ITEMIZED}") + @Value("${adagio.enumeration.QualitativeValueId.SORTING_TYPE_2_ALIVE_ITEMIZED}") public final Integer QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED = null; - @Value("${StatusCode.ENABLE}") + @Value("${adagio.enumeration.StatusCode.ENABLE}") public final String STATUS_VALID_CODE = null; - @Value("${StatusCode.TEMPORARY}") + @Value("${adagio.enumeration.StatusCode.TEMPORARY}") public final String STATUS_TEMPORARY_CODE = null; - @Value("${PersonId.UNKNOWN_RECORDER_PERSON}") + @Value("${adagio.enumeration.PersonId.UNKNOWN_RECORDER_PERSON}") public final Integer PERSON_ID_UNKNOWN_RECORDER_PERSON = null; - @Value("${QualityFlagCode.NOTQUALIFIED}") + @Value("${adagio.enumeration.QualityFlagCode.NOTQUALIFIED}") public final String QUALITY_FLAG_CODE_NOT_QUALIFIED = null; - @Value("${QualityFlagCode.DOUBTFUL}") + @Value("${adagio.enumeration.QualityFlagCode.DOUBTFUL}") public final String QUALITY_FLAG_CODE_DOUBTFUL = null; - @Value("${PmfmId.STATION_NUMBER}") + @Value("${adagio.enumeration.PmfmId.STATION_NUMBER}") public final Integer PMFM_ID_STATION_NUMBER = null; - @Value("${PmfmId.TRAWL_DISTANCE}") + @Value("${adagio.enumeration.PmfmId.TRAWL_DISTANCE}") public final Integer PMFM_ID_TRAWL_DISTANCE = null; - @Value("${PmfmId.RECTILINEAR_OPERATION}") + @Value("${adagio.enumeration.PmfmId.RECTILINEAR_OPERATION}") public final Integer PMFM_ID_RECTILINEAR_OPERATION = null; - @Value("${QualitativeValueId.RECTILINEAR_OPERATION_YES}") + @Value("${adagio.enumeration.QualitativeValueId.RECTILINEAR_OPERATION_YES}") public final Integer QUALITATIVE_RECTILINEAR_OPERATION_YES = null; - @Value("${QualitativeValueId.RECTILINEAR_OPERATION_NO}") + @Value("${adagio.enumeration.QualitativeValueId.RECTILINEAR_OPERATION_NO}") public final Integer QUALITATIVE_RECTILINEAR_OPERATION_NO = null; - @Value("${PmfmId.HAUL_VALID}") + @Value("${adagio.enumeration.PmfmId.HAUL_VALID}") public final Integer PMFM_ID_HAUL_VALID = null; - @Value("${QualitativeValueId.HAUL_VALID_YES}") + @Value("${adagio.enumeration.QualitativeValueId.HAUL_VALID_YES}") public final Integer QUALITATIVE_HAUL_VALID_YES = null; - @Value("${QualitativeValueId.HAUL_VALID_NO}") + @Value("${adagio.enumeration.QualitativeValueId.HAUL_VALID_NO}") public final Integer QUALITATIVE_HAUL_VALID_NO = null; - @Value("${PmfmId.MULTIRIG_NUMBER}") + @Value("${adagio.enumeration.PmfmId.MULTIRIG_NUMBER}") public final Integer PMFM_ID_MULTIRIG_NUMBER = null; - @Value("${PmfmId.MULTIRIG_AGGREGATION}") + @Value("${adagio.enumeration.PmfmId.MULTIRIG_AGGREGATION}") public final Integer PMFM_ID_MULTIRIG_AGGREGATION = null; - @Value("${PmfmId.WEIGHT_MEASURED}") + @Value("${adagio.enumeration.PmfmId.WEIGHT_MEASURED}") public final Integer PMFM_ID_WEIGHT_MEASURED = null; - @Value("${DepartmentId.UNKNOWN_RECORDER_DEPARTMENT}") + @Value("${adagio.enumeration.DepartmentId.UNKNOWN_RECORDER_DEPARTMENT}") public final Integer DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT = null; - @Value("${PmfmId.AGE}") + @Value("${adagio.enumeration.PmfmId.AGE}") public final Integer PMFM_ID_AGE = null; - @Value("${PmfmId.SURVEY_PART}") + @Value("${adagio.enumeration.PmfmId.SURVEY_PART}") public final Integer PMFM_ID_SURVEY_PART = null; - @Value("${PmfmId.VERTICAL_OPENING}") + @Value("${adagio.enumeration.PmfmId.VERTICAL_OPENING}") public final Integer PMFM_ID_VERTICAL_OPENING = null; - @Value("${PmfmId.HORIZONTAL_OPENING_WING}") - public final Integer PMFM_ID_HORIZONTAL_OPENING_WING = null; + @Value("${adagio.enumeration.PmfmId.HORIZONTAL_OPENING_WINGS}") + public final Integer PMFM_ID_HORIZONTAL_OPENING_WINGS = null; - @Value("${PmfmId.HORIZONTAL_OPENING_DOOR}") + @Value("${adagio.enumeration.PmfmId.HORIZONTAL_OPENING_DOOR}") public final Integer PMFM_ID_HORIZONTAL_OPENING_DOOR = null; - @Value("${PmfmId.DEAD_OR_ALIVE}") + @Value("${adagio.enumeration.PmfmId.DEAD_OR_ALIVE}") public final Integer PMFM_ID_DEAD_OR_ALIVE = null; - @Value("${ProgramCode.SCIENTIFIC_CRUISE_PREFIX}") + @Value("${adagio.enumeration.ProgramCode.SCIENTIFIC_CRUISE_PREFIX}") public final String PROGRAM_CODE_SCIENTIFIC_CRUISE_PREFIX = null; - @Value("${TaxonGroupTypeCode.COMMERCIAL_SPECIES}") + @Value("${adagio.enumeration.TaxonGroupTypeCode.COMMERCIAL_SPECIES}") public final String TAXON_GROUP_TYPE_ID_COMMERCIAL_SPECIES = null; - @Value("${ObjectTypeCode.SCIENTIFIC_CRUISE}") + @Value("${adagio.enumeration.ObjectTypeCode.SCIENTIFIC_CRUISE}") public final String OBJECT_TYPE_SCIENTIFIC_CRUISE = null; - @Value("${ObjectTypeCode.CATCH_BATCH}") + @Value("${adagio.enumeration.ObjectTypeCode.CATCH_BATCH}") public final String OBJECT_TYPE_CATCH_BATCH = null; - @Value("${ObjectTypeCode.BATCH}") + @Value("${adagio.enumeration.ObjectTypeCode.BATCH}") public final String OBJECT_TYPE_BATCH = null; - @Value("${ObjectTypeCode.OPERATION}") + @Value("${adagio.enumeration.ObjectTypeCode.OPERATION}") public final String OBJECT_TYPE_OPERATION = null; - @Value("${ObjectTypeCode.SAMPLE}") + @Value("${adagio.enumeration.ObjectTypeCode.SAMPLE}") public final String OBJECT_TYPE_SAMPLE = null; - @Value("${VesselPersonRoleId.SCIENTIFIC_CRUISE_MANAGER}") + @Value("${adagio.enumeration.VesselPersonRoleId.SCIENTIFIC_CRUISE_MANAGER}") public final Integer VESSEL_PERSON_ROLE_ID_SCIENTIFIC_CRUISE_MANAGER = null; - @Value("${VesselPersonRoleId.SORT_ROOM_MANAGER}") + @Value("${adagio.enumeration.VesselPersonRoleId.SORT_ROOM_MANAGER}") public final Integer VESSEL_PERSON_ROLE_ID_SORT_ROOM_MANAGER = null; - @Value("${VesselPersonRoleId.RECORDER_PERSON}") + @Value("${adagio.enumeration.VesselPersonRoleId.RECORDER_PERSON}") public final Integer VESSEL_PERSON_ROLE_ID_RECORDER_PERSON = null; - @Value("${TranscribingTypeId.TAXINOMIE_REFTAX_MNEMONIQUE}") + @Value("${adagio.enumeration.TranscribingTypeId.TAXINOMIE_REFTAX_MNEMONIQUE}") public final Integer TRANSCRIBING_TYPE_ID_REFTAX = null; - @Value("${TranscribingTypeId.TAXINOMIE_COMMUN_NOM_VERNACULAIRE}") + @Value("${adagio.enumeration.TranscribingTypeId.TAXINOMIE_COMMUN_NOM_VERNACULAIRE}") public final Integer TRANSCRIBING_TYPE_ID_VERNACULAIRE = null; - @Value("${MatrixId.PRODUCT_BATCH}") + @Value("${adagio.enumeration.MatrixId.PRODUCT_BATCH}") public final Integer MATRIX_ID_PRODUCT_BATCH = null; - @Value("${PmfmId.ID_PSFM}") + @Value("${adagio.enumeration.PmfmId.ID_PSFM}") public final Integer PMFM_ID_ID_PSFM = null; protected Set<Integer> propertedPmfmIds; Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -146,7 +146,7 @@ return service; } - public static void close() { + public static void shutdownTutti() { instance().shutdown(); } } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/test/DatabaseResource.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/test/DatabaseResource.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/test/DatabaseResource.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -32,7 +32,6 @@ import com.google.common.io.Files; import fr.ifremer.tutti.TuttiConfiguration; import fr.ifremer.tutti.TuttiConfigurationOption; -import fr.ifremer.tutti.persistence.RessourceClassLoader; import fr.ifremer.tutti.persistence.TuttiPersistence; import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.service.TuttiPersistenceServiceLocator; @@ -76,10 +75,10 @@ public static long BUILD_TIMESTAMP = System.nanoTime(); - private static ClassLoader oldClassLoader; +// private static ClassLoader oldClassLoader; +// +// protected RessourceClassLoader loader; - protected RessourceClassLoader loader; - private File resourceDirectory; private TuttiConfiguration config; @@ -156,10 +155,6 @@ this.destroyResources = destroyResources; } - public void updateSchema(TuttiPersistence persistenceService) { - - } - @Override public Statement apply(final Statement base, final Description description) { @@ -181,11 +176,10 @@ public void prepareConfig(ApplicationConfig applicationConfig, File resourceDirectory) { - applicationConfig.loadDefaultOptions( - TuttiConfigurationOption.values()); - applicationConfig.setDefaultOption( - "tutti.data.directory", - new File(resourceDirectory, "data").getAbsolutePath()); + TuttiConfiguration.getDefaultApplicationConfig(applicationConfig); + + applicationConfig.setDefaultOption(TuttiConfigurationOption.DATA_DIRECTORY.getKey(), + new File(resourceDirectory, "data").getAbsolutePath()); } public File copyClassPathResource(String path, String destinationName) throws IOException { @@ -225,11 +219,6 @@ resourceDirectory = FileUtil.getTestSpecificDirectory(testClass, "", null, BUILD_TIMESTAMP); - loader = new RessourceClassLoader(testClass.getClassLoader()); - - oldClassLoader = Thread.currentThread().getContextClassLoader(); - Thread.currentThread().setContextClassLoader(loader); - ConverterUtil.deregister(); ConverterUtil.initConverters(); @@ -313,16 +302,12 @@ Preconditions.checkState("true".equals(readonly), "readonly property must be at true value in read mode test in db confg: " + dbConfig); } - config.initConfig(loader); + config.initConfig(); if (log.isInfoEnabled()) { log.info("Use db: " + config.getJdbcUrl()); } - if (log.isDebugEnabled()) { - log.debug("Use conf.properties at " + config.getDbConfigurationPath()); - } - if (beanFactoryReferenceLocation != null) { TuttiPersistenceServiceLocator.initTutti( beanFactoryReferenceLocation, @@ -416,15 +401,15 @@ } } - // push back old classLoader - if (oldClassLoader != null) { - Thread.currentThread().setContextClassLoader(oldClassLoader); - } +// // push back old classLoader +// if (oldClassLoader != null) { +// Thread.currentThread().setContextClassLoader(oldClassLoader); +// } } protected void closeSpring() { - TuttiPersistenceServiceLocator.close(); + TuttiPersistenceServiceLocator.shutdownTutti(); if (beanFactoryReferenceLocation != null) { Added: trunk/tutti-persistence/src/main/resources/applicationContext-conf-tutti.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/applicationContext-conf-tutti.xml (rev 0) +++ trunk/tutti-persistence/src/main/resources/applicationContext-conf-tutti.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -0,0 +1,38 @@ +<?xml version="1.0" encoding="UTF-8"?> + + +<beans xmlns="http://www.springframework.org/schema/beans" + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" + xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.0.xsd"> + + <bean id="adagioConfiguration" class="fr.ifremer.adagio.core.config.AdagioConfiguration" + factory-method="getInstance" depends-on="tuttiConfiguration"> + </bean> + + <bean id="tuttiConfiguration" class="fr.ifremer.tutti.TuttiConfiguration" + factory-method="getInstance"> + </bean> + + +</beans> Property changes on: trunk/tutti-persistence/src/main/resources/applicationContext-conf-tutti.xml ___________________________________________________________________ Added: svn:mime-type + text/xml Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/resources/applicationContext-service-tutti.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/applicationContext-service-tutti.xml 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/resources/applicationContext-service-tutti.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -47,26 +47,26 @@ <bean id="tuttiProgramsCache" parent="abstractEternalCache"> <property name="cacheName" value="programs" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="tuttiProgramZonesCache" parent="abstractEternalCache"> <property name="cacheName" value="programZones" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="countriesCache" parent="abstractEternalCache"> <property name="cacheName" value="countries" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="harboursCache" parent="abstractEternalCache"> <property name="cacheName" value="harbours" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="tuttiPmfmsCache" parent="abstractEternalCache"> @@ -90,56 +90,56 @@ <bean id="tuttiFishingVesselsCache" parent="abstractEternalCache"> <property name="cacheName" value="fishingVessels" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="tuttiFishingVesselByCodeCache" parent="abstractEternalCache"> <property name="cacheName" value="vesselByCode" /> - <property name="maxElementsInMemory" value="40000"/> - <property name="maxElementsOnDisk" value="40000"/> +  +  </bean> <bean id="tuttiSpeciesCache" parent="abstractEternalCache"> <property name="cacheName" value="species" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="tuttiReferentSpeciesCache" parent="abstractEternalCache"> <property name="cacheName" value="referentSpecies" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="tuttiReferentSpeciesByIdCache" parent="abstractEternalCache"> <property name="cacheName" value="referentSpeciesById" /> - <property name="maxElementsInMemory" value="20000"/> - <property name="maxElementsOnDisk" value="20000"/> +  +  </bean> <bean id="tuttiReferentSpeciesByIdVenacularCache" parent="abstractEternalCache"> <property name="cacheName" value="referentSpeciesByIdVernacular" /> - <property name="maxElementsInMemory" value="20000"/> - <property name="maxElementsOnDisk" value="20000"/> +  +  </bean> <bean id="tuttiGearsCache" parent="abstractEternalCache"> <property name="cacheName" value="gears" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="tuttiPersonsCache" parent="abstractEternalCache"> <property name="cacheName" value="persons" /> - <property name="maxElementsInMemory" value="1"/> - <property name="maxElementsOnDisk" value="1"/> +  +  </bean> <bean id="tuttiPersonByIdCache" parent="abstractEternalCache"> <property name="cacheName" value="personById" /> - <property name="maxElementsInMemory" value="1000"/> - <property name="maxElementsOnDisk" value="1000"/> +  +  </bean> </beans> \ No newline at end of file Modified: trunk/tutti-persistence/src/main/resources/ehcache.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/ehcache.xml 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/resources/ehcache.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -62,19 +62,27 @@ eternal="false" timeToIdleSeconds="120" timeToLiveSeconds="120" - overflowToDisk="true"/> + overflowToDisk="true" /> - <cache name="org.hibernate.cache.UpdateTimestampsCache" + <cache name="org.hibernate.cache.StandardQueryCache" eternal="false" maxElementsInMemory="10000" timeToIdleSeconds="300" timeToLiveSeconds="300" overflowToDisk="false"/> - <cache name="org.hibernate.cache.StandardQueryCache" + + <cache name="org.hibernate.cache.spi.UpdateTimestampsCache" eternal="false" maxElementsInMemory="10000" timeToIdleSeconds="300" timeToLiveSeconds="300" overflowToDisk="false"/> + <cache name="org.hibernate.cache.internal.StandardQueryCache" + eternal="false" + maxElementsInMemory="10000" + timeToIdleSeconds="300" + timeToLiveSeconds="300" + overflowToDisk="false"/> + </ehcache> Modified: trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_en_GB.properties =================================================================== --- trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_en_GB.properties 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_en_GB.properties 2014-04-21 13:27:20 UTC (rev 1718) @@ -21,11 +21,13 @@ tutti.config.option.persistence.db.cache.directory.description= tutti.config.option.persistence.db.configurationPath.description= tutti.config.option.persistence.db.directory.description= +tutti.config.option.persistence.db.enumeration.path= tutti.config.option.persistence.db.enumerationPath.description= tutti.config.option.persistence.db.name.description= tutti.config.option.persistence.db.protocol.directory.description= tutti.config.option.persistence.hibernate.dialect.description= tutti.config.option.persistence.hibernate.formatSql.description= +tutti.config.option.persistence.hibernate.queriesFile.description= tutti.config.option.persistence.hibernate.showSql.description= tutti.config.option.persistence.hibernate.useSqlComment.description= tutti.config.option.persistence.jdbc.driver.description= @@ -108,11 +110,3 @@ tutti.persistence.loader.error= tutti.persistence.protocol.delete.error= tutti.persistence.protocol.fromFile.error= -tutti.persistence.synchronizeReferential.prepare.step1= -tutti.persistence.synchronizeReferential.prepare.step2= -tutti.persistence.synchronizeReferential.prepare.step3= -tutti.persistence.synchronizeReferential.prepare.step4= -tutti.persistence.synchronizeReferential.synchronize.step1= -tutti.persistence.synchronizeReferential.synchronize.step2= -tutti.persistence.synchronizeReferential.synchronizeTable= -tutti.persistence.tableMetadata.instanciation.error= Modified: trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_fr_FR.properties =================================================================== --- trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_fr_FR.properties 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/resources/i18n/tutti-persistence_fr_FR.properties 2014-04-21 13:27:20 UTC (rev 1718) @@ -21,11 +21,13 @@ tutti.config.option.persistence.db.cache.directory.description=Répertoire où sont stockées les caches de persistance tutti.config.option.persistence.db.configurationPath.description=Chemin du fichier de configuration d'Adagio tutti.config.option.persistence.db.directory.description=Répertoire où est la base de données +tutti.config.option.persistence.db.enumeration.path= tutti.config.option.persistence.db.enumerationPath.description=Chemin du fichier de correspondance des constantes tutti.config.option.persistence.db.name.description=Nom du fichier de la base de données tutti.config.option.persistence.db.protocol.directory.description=Répertoire où sont conservés les protocoles tutti.config.option.persistence.hibernate.dialect.description=Le dialecte hibernate utilisée pour communiquer avec la base de données tutti.config.option.persistence.hibernate.formatSql.description=Option pour ajouter les commentaires dans les requêtes sql générées +tutti.config.option.persistence.hibernate.queriesFile.description=Option pour changer les requêtes supplémentaires tutti.config.option.persistence.hibernate.showSql.description=Option pour afficher ou non les requête sql dans les logs tutti.config.option.persistence.hibernate.useSqlComment.description=Option pour ajouter les commentaires dans les requêtes sql générées tutti.config.option.persistence.jdbc.driver.description=Le pilote JDBC utilisé pour communiquer avec la base de données @@ -108,11 +110,3 @@ tutti.persistence.loader.error=Erreur de conversion du dossier %s en URL tutti.persistence.protocol.delete.error=Erreur lors de la suppression du protocole %1s (fichier %2s) tutti.persistence.protocol.fromFile.error=Erreur lors de l'import du protocole du fichier %s -tutti.persistence.synchronizeReferential.prepare.step1=Connexion à la base de synchronisation -tutti.persistence.synchronizeReferential.prepare.step2=Connexion à la base à synchroniser -tutti.persistence.synchronizeReferential.prepare.step3=Vérification de la compatibilité des schémas -tutti.persistence.synchronizeReferential.prepare.step4=Lecture de la table %s -tutti.persistence.synchronizeReferential.synchronize.step1=Mise à jour de la table %s -tutti.persistence.synchronizeReferential.synchronize.step2=Sauvegarde des données dans la base locale -tutti.persistence.synchronizeReferential.synchronizeTable=Mise à jour de la table %s -tutti.persistence.tableMetadata.instanciation.error=Erreur à l'initialisation de %s Copied: trunk/tutti-persistence/src/main/resources/queries-failsafe.hbm.xml (from rev 1712, trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml) =================================================================== --- trunk/tutti-persistence/src/main/resources/queries-failsafe.hbm.xml (rev 0) +++ trunk/tutti-persistence/src/main/resources/queries-failsafe.hbm.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -0,0 +1,889 @@ +<?xml version="1.0"?> + + +<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" + "http://www.hibernate.org/dtd/hibernate-mapping-3.0.dtd"> +<hibernate-mapping> + +  +  +  + +  + <query cacheable="true" name="allPrograms"> + <![CDATA[ + SELECT + p.code, + p.name, + p.description, + l.id, + l.label, + l.name + FROM + ProgramImpl p + LEFT OUTER JOIN p.locations l + WHERE + p.code LIKE :codePattern + AND ( + l is null OR ( + l.locationLevel.id = :locationLevelId + AND l.locationClassification.id = :locationClassificationId + ) + ) + ]]> + <query-param name="codePattern" type="java.lang.String"/> + <query-param name="locationLevelId" type="java.lang.Integer"/> + <query-param name="locationClassificationId" type="java.lang.Integer"/> + </query> + +  + <query cacheable="true" name="allCruises"> + <![CDATA[ + SELECT + c.id, + c.name, + c.departureDateTime + FROM + ScientificCruiseImpl c + WHERE + c.program.code = :programCode + ORDER BY + c.departureDateTime desc + ]]> + <query-param name="programCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="program"> + <![CDATA[ + SELECT + p.code, + p.name, + p.description, + l.id, + l.label, + l.name + FROM + ProgramImpl p + LEFT OUTER JOIN p.locations l + WHERE + p.code = :programCode + AND ( + l is null OR ( + l.locationLevel.id = :locationLevelId + AND l.locationClassification.id = :locationClassificationId + ) + ) + ORDER BY l.label + ]]> + <query-param name="programCode" type="java.lang.String"/> + <query-param name="locationLevelId" type="java.lang.Integer"/> + <query-param name="locationClassificationId" type="java.lang.Integer"/> + </query> + +  + <query cacheable="true" name="cruise"> + <![CDATA[ + SELECT + ft.departureLocation.id as departureLocationId, + ft.returnLocation.id as returnLocationId, + sc.program.code AS programCode, + sc.name AS name, + sc.departureDateTime AS departureDateTime, + sc.returnDateTime AS returnDateTime, + sc.vessel.code AS vesselCode, + mp.id AS managerId, + sc.comments AS scientificCruiseComments, + (SELECT sm.alphanumericalValue + FROM SurveyMeasurementImpl sm + WHERE sm.fishingTrip.id=ft.id AND sm.pmfm.id= :pmfmIdSurveyPart + ) AS surveyPart + FROM + ScientificCruiseImpl sc + LEFT OUTER JOIN sc.fishingTrips ft + LEFT OUTER JOIN sc.managerPerson mp + WHERE + sc.id = :cruiseId + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + <query-param name="pmfmIdSurveyPart" type="java.lang.Integer"/> + </query> + +  + <query cacheable="true" name="allCruiseVesselPersonFeatures"> + <![CDATA[ + SELECT + vpf.person.id AS personId, + vpr.id AS roleId, + vpf.rankOrder + FROM + ScientificCruiseImpl sc + JOIN sc.fishingTrips ft + JOIN ft.vesselPersonFeatures vpf + JOIN vpf.vesselPersonRoles vpr + WHERE + sc.id = :cruiseId + ORDER By vpf.rankOrder + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="allCruiseGears"> + <![CDATA[ + SELECT + gpf.gear.id AS gearId, + gpf.rankOrder AS rankOrder, + MAX(CASE gpm.pmfm.id + WHEN :pmfmIdTrawlNet THEN gpm.numericalValue + ELSE 0 + END) as trawlNet, + count(o.id) as operationCount + FROM + ScientificCruiseImpl sc + JOIN sc.fishingTrips ft + JOIN ft.gearPhysicalFeatures gpf + LEFT OUTER JOIN gpf.gearPhysicalMeasurements gpm + LEFT OUTER JOIN gpf.operations o + WHERE + sc.id = :cruiseId + GROUP BY + gpf.gear.id, gpf.rankOrder + ORDER BY gpf.rankOrder ASC + ]]> +  + <query-param name="cruiseId" type="java.lang.Integer"/> + <query-param name="pmfmIdTrawlNet" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="updateOperationsVessel"> + <![CDATA[ + UPDATE FishingOperationImpl o + SET o.vessel.id=:vesselId + WHERE + o IN ( + FROM FishingOperationImpl fo + WHERE fo.fishingTrip.scientificCruise.id=:cruiseId + ) + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + <query-param name="vesselId" type="java.lang.String"/> + </query> + + <query cacheable="true" name="gearCaracteristics"> + <![CDATA[ + SELECT + gpm + FROM + ScientificCruiseImpl sc + JOIN sc.fishingTrips ft + JOIN ft.gearPhysicalFeatures gpf + LEFT OUTER JOIN gpf.gearPhysicalMeasurements gpm + WHERE + sc.id = :cruiseId + AND gpf.gear.id = :gearId + AND gpf.rankOrder = :rankOrder + AND gpm != null + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + <query-param name="gearId" type="java.lang.Integer"/> + <query-param name="rankOrder" type="java.lang.Short"/> + </query> + + <query cacheable="true" name="allCruiseSecondaryVessels"> + <![CDATA[ + SELECT + va.operationVesselAssociationPk.vessel.code AS associatedVesselCode + FROM + ScientificCruiseImpl sc + JOIN sc.fishingTrips ft + JOIN ft.operations o + JOIN o.operationVesselAssociations va + WHERE + sc.id = :cruiseId + GROUP BY + va.operationVesselAssociationPk.vessel + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="allFishingOperationIds"> + <![CDATA[ + SELECT + o.id AS id + FROM + FishingOperationImpl o + WHERE + o.fishingTrip.scientificCruise.id=:cruiseId + ORDER BY + o.startDateTime + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="allFishingOperations"> + <![CDATA[ + SELECT + o.id AS id, + o.name AS name, + o.startDateTime AS startDateTime, + (select vum.alphanumericalValue from VesselUseMeasurementImpl vum where vum.vesselUseFeatures.id = vuf.id and vum.pmfm.id=:pmfmIdStationNumber) AS stationNumber, + (select gum.alphanumericalValue from GearUseMeasurementImpl gum where gum.gearUseFeatures.id = guf.id and gum.pmfm.id=:pmfmIdMultirigAggregation) AS multirigAggregation + FROM + FishingOperationImpl o + LEFT OUTER JOIN o.gearUseFeatures guf + LEFT OUTER JOIN guf.gear g + LEFT OUTER JOIN o.vesselUseFeatures vuf + WHERE + o.fishingTrip.scientificCruise.id=:cruiseId + ORDER BY + o.startDateTime + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + <query-param name="pmfmIdStationNumber" type="java.lang.Integer"/> + <query-param name="pmfmIdMultirigAggregation" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="allFishingOperationsWithGear"> + <![CDATA[ + SELECT + g.id AS gearId, + guf.rankOrder as gufRankOrder + FROM + FishingOperationImpl o + INNER JOIN o.gearUseFeatures guf + LEFT OUTER JOIN guf.gear g + WHERE + o.fishingTrip.scientificCruise.id=:cruiseId + AND g.id in (:gearIds) + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + <query-param name="gearIds" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="updateOperationsGear"> + <![CDATA[ + UPDATE GearUseFeaturesImpl guf + SET guf.rankOrder=:newRankOrder + WHERE + guf IN ( + SELECT + guf + FROM + FishingOperationImpl o + INNER JOIN o.gearUseFeatures guf + WHERE + o.fishingTrip.scientificCruise.id=:cruiseId + AND guf.rankOrder= :oldRankOrder + AND guf.gear.id= :gearId + ) + ]]> + <query-param name="cruiseId" type="java.lang.Integer"/> + <query-param name="gearId" type="java.lang.Integer"/> + <query-param name="oldRankOrder" type="java.lang.Short"/> + <query-param name="newRankOrder" type="java.lang.Short"/> + </query> + + <query cacheable="true" name="fishingOperation"> + <![CDATA[ + SELECT + o.name AS name, + guf.rankOrder AS rankOrder, + max(o.startDateTime) AS startDateTime, + max(o.endDateTime) AS endDateTime, + max(o.comments) AS comments, + max(g.id) AS gearId, + (select vp_start from VesselPositionImpl vp_start where vp_start.operation.id = o.id and vp_start.dateTime = o.startDateTime) AS startVesselPosition, + (select vp_end from VesselPositionImpl vp_end where vp_end.operation.id = o.id and vp_end.dateTime = o.endDateTime) AS endVesselPosition, + max(case when (rl.locationLevel.id = :locationLevelIdStrata) then rl.id else null end) AS strataId, + max(case when (rl.locationLevel.id = :locationLevelIdSubStrata) then rl.id else null end) AS subStrataId, + max(case when (rl.locationLevel.id = :locationLevelIdLocalite) then rl.id else null end) AS localiteId, + max(o.vessel.code) as vesselCode + FROM + FishingOperationImpl o + INNER JOIN o.gearUseFeatures guf + LEFT OUTER JOIN guf.gear g + LEFT OUTER JOIN guf.fishingAreas fa + LEFT OUTER JOIN fa.regulationLocations fa2rl + LEFT OUTER JOIN fa2rl.id.location rl + WHERE + o.id=:fishingOperationId + GROUP BY o.name, guf.rankOrder + ]]> +  +  + <query-param name="fishingOperationId" type="java.lang.Integer"/> + <query-param name="locationLevelIdStrata" type="java.lang.Integer"/> + <query-param name="locationLevelIdSubStrata" type="java.lang.Integer"/> + <query-param name="locationLevelIdLocalite" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="fishingOperationSecondaryVessel"> + <![CDATA[ + SELECT + va.operationVesselAssociationPk.vessel.code, + va.isCatchOnOperationVessel + FROM + FishingOperationImpl o + LEFT OUTER JOIN o.operationVesselAssociations va + WHERE + o.id=:fishingOperationId + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="fishingOperationRankOrder"> + <![CDATA[ + SELECT + count(o1.id) + 1 as fishingOperationRankOrder + FROM + FishingOperationImpl o1, + FishingOperationImpl o2 + WHERE + o1.fishingTrip.id = o2.fishingTrip.id + AND o1.startDateTime < o2.startDateTime + AND o2.id = :fishingOperationId + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="fishingOperationVesselUseFeatures"> + <![CDATA[ + SELECT + vum.pmfm.id as pmfmId, + vum.numericalValue as numericalValue, + vum.alphanumericalValue as alphanumericalValue, + vum.qualitativeValue.id as qualitativeValueId + from + VesselUseFeaturesImpl vuf + join vuf.vesselUseMeasurements vum + WHERE + vuf.operation.id = :fishingOperationId + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="fishingOperationGearUseFeatures"> + <![CDATA[ + SELECT + gum.pmfm.id as pmfmId, + gum.numericalValue as numericalValue, + gum.alphanumericalValue as alphanumericalValue, + gum.qualitativeValue.id as qualitativeValueId + from + GearUseFeaturesImpl guf + join guf.gearUseMeasurements gum + WHERE + guf.operation.id = :fishingOperationId + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + </query> + +  + <query cacheable="true" name="fishingOperationVesselPersonFeatures"> + <![CDATA[ + SELECT + vpf.person.id AS personId, + vpr.id AS roleId, + vpf.rankOrder + FROM + VesselPersonFeaturesImpl vpf + JOIN vpf.vesselPersonRoles vpr + WHERE + vpf.operation.id = :fishingOperationId + ORDER By vpf.rankOrder + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="updateFishingOperationCatchBatch"> + <![CDATA[ + UPDATE FishingOperationImpl o + SET o.catchBatch.id=:catchBatchId + WHERE + o.id=:fishingOperationId + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + <query-param name="catchBatchId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="allFishingOperationSamplesWithoutBatch"> + <![CDATA[ + SELECT + s.id AS id, + s.referenceTaxon.id AS referenceTaxon, + s.comments AS comment + FROM + SampleImpl s + WHERE + s.fishingOperation.id= :fishingOperationId + AND s.batch IS NULL + ORDER BY + s.id + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="allFishingOperationSamplesWithBatch"> + <![CDATA[ + SELECT + s.id AS id, + s.referenceTaxon.id AS referenceTaxon, + s.comments AS comment + FROM + SampleImpl s + WHERE + s.fishingOperation.id= :fishingOperationId + AND s.batch.id = :batchId + ORDER BY + s.id + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + <query-param name="batchId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="sampleMeasurements"> + <![CDATA[ + SELECT + sm.pmfm.id as pmfmId, + sm.numericalValue as numericalValue, + sm.alphanumericalValue as alphanumericalValue, + sm.qualitativeValue.id as qualitativeValueId + from + SampleMeasurementImpl sm + WHERE + sm.sample.id = :sampleId + ]]> + <query-param name="sampleId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="catchBatch"> + <![CDATA[ + SELECT + cb.id AS catchBatchId, + cbQm.numericalValue as totalWeight, + b1.id AS id1, + b1.samplingRatioText as samplingRatioText1, + (select qm.numericalValue from QuantificationMeasurementImpl qm where qm.batch.id=b1.id and qm.isReferenceQuantification=true) AS weight1, + (select sm.qualitativeValue.id from SortingMeasurementImpl sm where sm.sortingBatch.id=b1.id and sm.pmfm.id=:pmfmIdSorted) AS qv2, + b2.id AS id2, + b2.samplingRatioText AS samplingRatioText2, + (select qm.numericalValue from QuantificationMeasurementImpl qm where qm.batch.id=b2.id and qm.isReferenceQuantification=true) AS weight2, + (select sm.qualitativeValue.id from SortingMeasurementImpl sm where sm.sortingBatch.id=b2.id and sm.pmfm.id=:pmfmIdSortingType) AS qv2 + FROM + CatchBatchImpl cb + INNER JOIN cb.childBatchs b1 + LEFT OUTER JOIN b1.childBatchs b2 + LEFT OUTER JOIN cb.quantificationMeasurements cbQm + WHERE + cb.fishingOperation.id = :fishingOperationId + AND ( + cbQm is null + OR cbQm.isReferenceQuantification=true + ) + ORDER BY b1.id, b2.id + ]]> + <query-param name="fishingOperationId" type="java.lang.Integer"/> + <query-param name="pmfmIdSorted" type="java.lang.Integer"/> + <query-param name="pmfmIdSortingType" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="allSpeciesBatchFrequency"> + <![CDATA[ + SELECT + b.id as batchId, + b.individualCount AS individualCount, + qm.numericalValue AS weight, + b.comments AS comments, + sm.pmfm.id AS pmfmId, + sm.numericalValue AS numValue + FROM + SortingBatchImpl b + LEFT OUTER JOIN b.sortingMeasurements sm + LEFT OUTER JOIN b.quantificationMeasurements qm + WHERE + b.parentBatch.id=:parentBatchId + AND ( + qm is null + OR qm.isReferenceQuantification=true + ) + AND sm.numericalValue is not null + AND sm.pmfm.parameter.isAlphanumeric=false + AND sm.pmfm.parameter.isQualitative=false + ORDER BY sm.numericalValue + ]]> + <query-param name="parentBatchId" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="allAttachment"> + <![CDATA[ + SELECT + m.objectType.code as attachmentObjectType, + m.objectId AS attachmentObjectId, + m.id AS attachmentId, + m.path AS attachmentPath, + m.name AS attachmentName, + m.comments as attachmentComment + FROM + MeasurementFileImpl m + WHERE + m.objectId = :objectId + AND m.objectType.code = :objectTypeCode + ORDER BY m.id + ]]> + <query-param name="objectId" type="java.lang.Integer"/> + <query-param name="objectTypeCode" type="java.lang.Integer"/> + </query> + + <query cacheable="true" name="attachment"> + <![CDATA[ + SELECT + m.objectType.code as attachmentObjectType, + m.objectId AS attachmentObjectId, + m.id AS attachmentId, + m.path AS attachmentPath, + m.name AS attachmentName, + m.comments as attachmentComment + FROM + MeasurementFileImpl m + WHERE + m.id = :attachmentId + ]]> + <query-param name="attachmentId" type="java.lang.Integer"/> + </query> + +  +  +  + +  + <query cacheable="true" name="pmfmById"> + <![CDATA[ + SELECT + p.id AS pmfmId, + p.parameter.name AS parameterName, + p.matrix.name AS matrixName, + p.fraction.name AS fractionName, + p.method.name AS methodName, + p.parameter.isAlphanumeric AS isAlphanumeric, + p.parameter.isQualitative AS isQualitative, + p.signifFiguresNumber, + p.maximumNumberDecimals, + p.precision, + case when (p.unit.id = :unitIdNone) then '' else p.unit.symbol end AS symbol, + p.status AS status + FROM PmfmImpl p + WHERE + p.status.code IN (:statusValidCode, :statusTemporaryCode) + AND p.parameter.isCalculated = false + AND p.id= :pmfmId + ]]> + <query-param name="pmfmId" type="java.lang.Integer"/> + <query-param name="unitIdNone" type="java.lang.Integer"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="pmfmQualitativeValues"> + <![CDATA[ + SELECT + qv.id AS id, + qv.name, + case when (qv.description is null) then qv.name else qv.description end AS description, + qv.status AS status + FROM + PmfmImpl p JOIN p.qualitativeValues qv + WHERE + p.id= :pmfmId + AND qv.status.code IN (:statusValidCode, :statusTemporaryCode) + ]]> + <query-param name="pmfmId" type="java.lang.Integer"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="allPmfm"> + <![CDATA[ + SELECT + p.id AS pmfmId, + p.parameter.name AS parameterName, + p.matrix.name AS matrixName, + p.fraction.name AS fractionName, + p.method.name AS methodName, + p.parameter.isAlphanumeric AS isAlphanumeric, + p.parameter.isQualitative AS isQualitative, + p.signifFiguresNumber, + p.maximumNumberDecimals, + p.precision, + case when (p.unit.id = :unitIdNone) then '' else p.unit.symbol end AS symbol, + p.status AS status + FROM PmfmImpl p + WHERE + p.status.code IN (:statusValidCode, :statusTemporaryCode) + AND p.parameter.isCalculated = false + ]]> + <query-param name="unitIdNone" type="java.lang.Integer"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="allLocationsByLevelAndClassificiation"> + <![CDATA[ + SELECT + l.id as locationId, + l.label as locationLabel, + l.name as locationName, + l.status as status + FROM LocationImpl l + WHERE + l.locationLevel.id = :locationLevelId + AND l.locationClassification.id = :locationClassificationId + AND l.status.code IN (:statusValidCode, :statusTemporaryCode) + ]]> + <query-param name="locationLevelId" type="java.lang.Integer"/> + <query-param name="locationClassificationId" type="java.lang.Integer"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="locationById"> + <![CDATA[ + SELECT + l.id as locationId, + l.label as locationLabel, + l.name as locationName, + l.status as status + FROM + LocationImpl l + WHERE + l.id = :locationId + ]]> + <query-param name="locationId" type="java.lang.Integer"/> + </query> + + +  + <query cacheable="true" name="allObjectType"> + <![CDATA[ + SELECT + p.code AS objectTypeCode, + p.name AS objectTypeName, + p.description AS objectTypeDescription + FROM ObjectTypeImpl p + ]]> + </query> + +  + <query cacheable="true" name="objectType"> + <![CDATA[ + SELECT + p.code AS objectTypeCode, + p.name AS objectTypeName, + p.description AS objectTypeDescription + FROM ObjectTypeImpl p + WHERE p.code = :objectTypeCode + ]]> + <query-param name="objectTypeCode" type="java.lang.String"/> + </query> + +  +  +  + +  + <query cacheable="true" name="allFishingOperationLocationByParent"> + <![CDATA[ + SELECT + l.id as locationId, + l.label as locationLabel, + l.name as locationName, + l.status as status + FROM + LocationImpl l, + LocationHierarchyImpl lh + WHERE + l.status.code IN (:statusValidCode, :statusTemporaryCode) + AND l.locationLevel.id = :locationLevelId + AND l.locationClassification.id = :locationClassificationId + AND l.id = lh.locationHierarchyPk.location.id + AND lh.locationHierarchyPk.parent.id = :parentId + AND lh.locationHierarchyPk.parent.locationLevel.id = :parentLocationLevelId + ]]> + <query-param name="parentId" type="java.lang.Integer"/> + <query-param name="parentLocationLevelId" type="java.lang.Integer"/> + <query-param name="locationLevelId" type="java.lang.Integer"/> + <query-param name="locationClassificationId" type="java.lang.Integer"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="allVessels"> + <![CDATA[ + SELECT + v.code AS vesselCode, + vrp.registrationCode AS nationalRegistrationCode, + vrp.internationalRegistrationCode as internationalRegistrationCode, + vf.name AS vesselName, + v.status AS status + FROM + VesselImpl v + INNER JOIN v.vesselRegistrationPeriods AS vrp + LEFT OUTER JOIN v.vesselFeatures AS vf + WHERE + v.vesselType.id = :vesselTypeId + AND v.status.code IN (:statusValidCode, :statusTemporaryCode) + AND vrp.vesselRegistrationPeriodPk.startDateTime <= :refDate + AND vf.startDateTime <= :refDate + AND coalesce(vrp.endDateTime, :refDate) >= :refDate + AND coalesce(vf.endDateTime, :refDate) >= :refDate + ) + ]]> + <query-param name="vesselTypeId" type="java.lang.Integer"/> + <query-param name="refDate" type="java.util.Date"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="vessel"> + <![CDATA[ + SELECT + v.code AS vesselCode, + vrp.registrationCode AS nationalRegistrationCode, + vrp.internationalRegistrationCode as internationalRegistrationCode, + vf.name AS vesselName, + v.status AS status + FROM + VesselImpl v + INNER JOIN v.vesselRegistrationPeriods AS vrp + LEFT OUTER JOIN v.vesselFeatures AS vf + WHERE + v.code = :vesselCode + AND v.status.code IN (:statusValidCode, :statusTemporaryCode) + AND NOT(coalesce(vrp.endDateTime, '2999-12-31 00:00:00') < coalesce(:refDate,sysdate) + OR vrp.vesselRegistrationPeriodPk.startDateTime > coalesce(:refDate,sysdate) + ) + ORDER BY vf.startDateTime DESC + ]]> + <query-param name="vesselCode" type="java.lang.String"/> + <query-param name="refDate" type="java.util.Date"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="allGears"> + <![CDATA[ + SELECT + g.id, + g.label, + g.name, + g.gearClassification, + g.status AS status + FROM GearImpl g + WHERE + g.gearClassification.id= :gearClassificiationId + AND g.status.code IN (:statusValidCode, :statusTemporaryCode) + ]]> + <query-param name="gearClassificiationId" type="java.lang.Integer"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="gear"> + <![CDATA[ + SELECT + g.id, + g.label, + g.name, + g.gearClassification, + g.status AS status + FROM GearImpl g + WHERE + g.id = :gearId + ]]> + <query-param name="gearId" type="java.lang.Integer"/> + </query> + +  + <query cacheable="true" name="allPersons"> + <![CDATA[ + SELECT DISTINCT + p.id, + p.lastname, + p.firstname, + p.department.code, + p.status + FROM + PersonImpl p + LEFT OUTER JOIN p.profils pp + WHERE + p.status.code IN (:statusValidCode, :statusTemporaryCode) + AND pp.id IN ( + :observerProfilId, + :projectMemberProfilId, + :userProfilId + ) + AND p.department.code LIKE concat(:departementPrefixCode , '%') + ]]> + <query-param name="observerProfilId" type="java.lang.Integer"/> + <query-param name="projectMemberProfilId" type="java.lang.Integer"/> + <query-param name="userProfilId" type="java.lang.Integer"/> + <query-param name="statusValidCode" type="java.lang.String"/> + <query-param name="statusTemporaryCode" type="java.lang.String"/> + <query-param name="departementPrefixCode" type="java.lang.String"/> + </query> + +  + <query cacheable="true" name="person"> + <![CDATA[ + SELECT DISTINCT + p.id, + p.lastname, + p.firstname, + p.department.code, + p.status + FROM PersonImpl p + WHERE p.id = :personId + ]]> + <query-param name="personId" type="java.lang.Integer"/> + </query> + +  +  +  + + +  +  +  + + +</hibernate-mapping> Deleted: trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/resources/queries-override.hbm.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -1,889 +0,0 @@ -<?xml version="1.0"?> - - -<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" - "http://www.hibernate.org/dtd/hibernate-mapping-3.0.dtd"> -<hibernate-mapping> - -  -  -  - -  - <query cacheable="true" name="allPrograms"> - <![CDATA[ - SELECT - p.code, - p.name, - p.description, - l.id, - l.label, - l.name - FROM - ProgramImpl p - LEFT OUTER JOIN p.locations l - WHERE - p.code LIKE :codePattern - AND ( - l is null OR ( - l.locationLevel.id = :locationLevelId - AND l.locationClassification.id = :locationClassificationId - ) - ) - ]]> - <query-param name="codePattern" type="java.lang.String"/> - <query-param name="locationLevelId" type="java.lang.Integer"/> - <query-param name="locationClassificationId" type="java.lang.Integer"/> - </query> - -  - <query cacheable="true" name="allCruises"> - <![CDATA[ - SELECT - c.id, - c.name, - c.departureDateTime - FROM - ScientificCruiseImpl c - WHERE - c.program.code = :programCode - ORDER BY - c.departureDateTime desc - ]]> - <query-param name="programCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="program"> - <![CDATA[ - SELECT - p.code, - p.name, - p.description, - l.id, - l.label, - l.name - FROM - ProgramImpl p - LEFT OUTER JOIN p.locations l - WHERE - p.code = :programCode - AND ( - l is null OR ( - l.locationLevel.id = :locationLevelId - AND l.locationClassification.id = :locationClassificationId - ) - ) - ORDER BY l.label - ]]> - <query-param name="programCode" type="java.lang.String"/> - <query-param name="locationLevelId" type="java.lang.Integer"/> - <query-param name="locationClassificationId" type="java.lang.Integer"/> - </query> - -  - <query cacheable="true" name="cruise"> - <![CDATA[ - SELECT - ft.departureLocation.id as departureLocationId, - ft.returnLocation.id as returnLocationId, - sc.program.code AS programCode, - sc.name AS name, - sc.departureDateTime AS departureDateTime, - sc.returnDateTime AS returnDateTime, - sc.vessel.code AS vesselCode, - mp.id AS managerId, - sc.comments AS scientificCruiseComments, - (SELECT sm.alphanumericalValue - FROM SurveyMeasurementImpl sm - WHERE sm.fishingTrip.id=ft.id AND sm.pmfm.id= :pmfmIdSurveyPart - ) AS surveyPart - FROM - ScientificCruiseImpl sc - LEFT OUTER JOIN sc.fishingTrips ft - LEFT OUTER JOIN sc.managerPerson mp - WHERE - sc.id = :cruiseId - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - <query-param name="pmfmIdSurveyPart" type="java.lang.Integer"/> - </query> - -  - <query cacheable="true" name="allCruiseVesselPersonFeatures"> - <![CDATA[ - SELECT - vpf.person.id AS personId, - vpr.id AS roleId, - vpf.rankOrder - FROM - ScientificCruiseImpl sc - JOIN sc.fishingTrips ft - JOIN ft.vesselPersonFeatures vpf - JOIN vpf.vesselPersonRoles vpr - WHERE - sc.id = :cruiseId - ORDER By vpf.rankOrder - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="allCruiseGears"> - <![CDATA[ - SELECT - gpf.gear.id AS gearId, - gpf.rankOrder AS rankOrder, - MAX(CASE gpm.pmfm.id - WHEN :pmfmIdTrawlNet THEN gpm.numericalValue - ELSE 0 - END) as trawlNet, - count(o.id) as operationCount - FROM - ScientificCruiseImpl sc - JOIN sc.fishingTrips ft - JOIN ft.gearPhysicalFeatures gpf - LEFT OUTER JOIN gpf.gearPhysicalMeasurements gpm - LEFT OUTER JOIN gpf.operations o - WHERE - sc.id = :cruiseId - GROUP BY - gpf.gear.id, gpf.rankOrder - ORDER BY gpf.rankOrder ASC - ]]> -  - <query-param name="cruiseId" type="java.lang.Integer"/> - <query-param name="pmfmIdTrawlNet" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="updateOperationsVessel"> - <![CDATA[ - UPDATE FishingOperationImpl o - SET o.vessel.id=:vesselId - WHERE - o IN ( - FROM FishingOperationImpl fo - WHERE fo.fishingTrip.scientificCruise.id=:cruiseId - ) - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - <query-param name="vesselId" type="java.lang.String"/> - </query> - - <query cacheable="true" name="gearCaracteristics"> - <![CDATA[ - SELECT - gpm - FROM - ScientificCruiseImpl sc - JOIN sc.fishingTrips ft - JOIN ft.gearPhysicalFeatures gpf - LEFT OUTER JOIN gpf.gearPhysicalMeasurements gpm - WHERE - sc.id = :cruiseId - AND gpf.gear.id = :gearId - AND gpf.rankOrder = :rankOrder - AND gpm != null - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - <query-param name="gearId" type="java.lang.Integer"/> - <query-param name="rankOrder" type="java.lang.Short"/> - </query> - - <query cacheable="true" name="allCruiseSecondaryVessels"> - <![CDATA[ - SELECT - va.operationVesselAssociationPk.vessel.code AS associatedVesselCode - FROM - ScientificCruiseImpl sc - JOIN sc.fishingTrips ft - JOIN ft.operations o - JOIN o.operationVesselAssociations va - WHERE - sc.id = :cruiseId - GROUP BY - va.operationVesselAssociationPk.vessel - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="allFishingOperationIds"> - <![CDATA[ - SELECT - o.id AS id - FROM - FishingOperationImpl o - WHERE - o.fishingTrip.scientificCruise.id=:cruiseId - ORDER BY - o.startDateTime - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="allFishingOperations"> - <![CDATA[ - SELECT - o.id AS id, - o.name AS name, - o.startDateTime AS startDateTime, - (select vum.alphanumericalValue from VesselUseMeasurementImpl vum where vum.vesselUseFeatures.id = vuf.id and vum.pmfm.id=:pmfmIdStationNumber) AS stationNumber, - (select gum.alphanumericalValue from GearUseMeasurementImpl gum where gum.gearUseFeatures.id = guf.id and gum.pmfm.id=:pmfmIdMultirigAggregation) AS multirigAggregation - FROM - FishingOperationImpl o - LEFT OUTER JOIN o.gearUseFeatures guf - LEFT OUTER JOIN guf.gear g - LEFT OUTER JOIN o.vesselUseFeatures vuf - WHERE - o.fishingTrip.scientificCruise.id=:cruiseId - ORDER BY - o.startDateTime - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - <query-param name="pmfmIdStationNumber" type="java.lang.Integer"/> - <query-param name="pmfmIdMultirigAggregation" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="allFishingOperationsWithGear"> - <![CDATA[ - SELECT - g.id AS gearId, - guf.rankOrder as gufRankOrder - FROM - FishingOperationImpl o - INNER JOIN o.gearUseFeatures guf - LEFT OUTER JOIN guf.gear g - WHERE - o.fishingTrip.scientificCruise.id=:cruiseId - AND g.id in (:gearIds) - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - <query-param name="gearIds" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="updateOperationsGear"> - <![CDATA[ - UPDATE GearUseFeaturesImpl guf - SET guf.rankOrder=:newRankOrder - WHERE - guf IN ( - SELECT - guf - FROM - FishingOperationImpl o - INNER JOIN o.gearUseFeatures guf - WHERE - o.fishingTrip.scientificCruise.id=:cruiseId - AND guf.rankOrder= :oldRankOrder - AND guf.gear.id= :gearId - ) - ]]> - <query-param name="cruiseId" type="java.lang.Integer"/> - <query-param name="gearId" type="java.lang.Integer"/> - <query-param name="oldRankOrder" type="java.lang.Short"/> - <query-param name="newRankOrder" type="java.lang.Short"/> - </query> - - <query cacheable="true" name="fishingOperation"> - <![CDATA[ - SELECT - o.name AS name, - guf.rankOrder AS rankOrder, - max(o.startDateTime) AS startDateTime, - max(o.endDateTime) AS endDateTime, - max(o.comments) AS comments, - max(g.id) AS gearId, - (select vp_start from VesselPositionImpl vp_start where vp_start.operation.id = o.id and vp_start.dateTime = o.startDateTime) AS startVesselPosition, - (select vp_end from VesselPositionImpl vp_end where vp_end.operation.id = o.id and vp_end.dateTime = o.endDateTime) AS endVesselPosition, - max(case when (rl.locationLevel.id = :locationLevelIdStrata) then rl.id else null end) AS strataId, - max(case when (rl.locationLevel.id = :locationLevelIdSubStrata) then rl.id else null end) AS subStrataId, - max(case when (rl.locationLevel.id = :locationLevelIdLocalite) then rl.id else null end) AS localiteId, - max(o.vessel.code) as vesselCode - FROM - FishingOperationImpl o - INNER JOIN o.gearUseFeatures guf - LEFT OUTER JOIN guf.gear g - LEFT OUTER JOIN guf.fishingAreas fa - LEFT OUTER JOIN fa.regulationLocation fa2rl - LEFT OUTER JOIN fa2rl.id.location rl - WHERE - o.id=:fishingOperationId - GROUP BY o.name, guf.rankOrder - ]]> -  -  - <query-param name="fishingOperationId" type="java.lang.Integer"/> - <query-param name="locationLevelIdStrata" type="java.lang.Integer"/> - <query-param name="locationLevelIdSubStrata" type="java.lang.Integer"/> - <query-param name="locationLevelIdLocalite" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="fishingOperationSecondaryVessel"> - <![CDATA[ - SELECT - va.operationVesselAssociationPk.vessel.code, - va.isCatchOnOperationVessel - FROM - FishingOperationImpl o - LEFT OUTER JOIN o.operationVesselAssociations va - WHERE - o.id=:fishingOperationId - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="fishingOperationRankOrder"> - <![CDATA[ - SELECT - count(o1.id) + 1 as fishingOperationRankOrder - FROM - FishingOperationImpl o1, - FishingOperationImpl o2 - WHERE - o1.fishingTrip.id = o2.fishingTrip.id - AND o1.startDateTime < o2.startDateTime - AND o2.id = :fishingOperationId - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="fishingOperationVesselUseFeatures"> - <![CDATA[ - SELECT - vum.pmfm.id as pmfmId, - vum.numericalValue as numericalValue, - vum.alphanumericalValue as alphanumericalValue, - vum.qualitativeValue.id as qualitativeValueId - from - VesselUseFeaturesImpl vuf - join vuf.vesselUseMeasurements vum - WHERE - vuf.operation.id = :fishingOperationId - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="fishingOperationGearUseFeatures"> - <![CDATA[ - SELECT - gum.pmfm.id as pmfmId, - gum.numericalValue as numericalValue, - gum.alphanumericalValue as alphanumericalValue, - gum.qualitativeValue.id as qualitativeValueId - from - GearUseFeaturesImpl guf - join guf.gearUseMeasurements gum - WHERE - guf.operation.id = :fishingOperationId - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - </query> - -  - <query cacheable="true" name="fishingOperationVesselPersonFeatures"> - <![CDATA[ - SELECT - vpf.person.id AS personId, - vpr.id AS roleId, - vpf.rankOrder - FROM - VesselPersonFeaturesImpl vpf - JOIN vpf.vesselPersonRoles vpr - WHERE - vpf.operation.id = :fishingOperationId - ORDER By vpf.rankOrder - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="updateFishingOperationCatchBatch"> - <![CDATA[ - UPDATE FishingOperationImpl o - SET o.catchBatch.id=:catchBatchId - WHERE - o.id=:fishingOperationId - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - <query-param name="catchBatchId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="allFishingOperationSamplesWithoutBatch"> - <![CDATA[ - SELECT - s.id AS id, - s.referenceTaxon.id AS referenceTaxon, - s.comments AS comment - FROM - SampleImpl s - WHERE - s.fishingOperation.id= :fishingOperationId - AND s.batch IS NULL - ORDER BY - s.id - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="allFishingOperationSamplesWithBatch"> - <![CDATA[ - SELECT - s.id AS id, - s.referenceTaxon.id AS referenceTaxon, - s.comments AS comment - FROM - SampleImpl s - WHERE - s.fishingOperation.id= :fishingOperationId - AND s.batch.id = :batchId - ORDER BY - s.id - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - <query-param name="batchId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="sampleMeasurements"> - <![CDATA[ - SELECT - sm.pmfm.id as pmfmId, - sm.numericalValue as numericalValue, - sm.alphanumericalValue as alphanumericalValue, - sm.qualitativeValue.id as qualitativeValueId - from - SampleMeasurementImpl sm - WHERE - sm.sample.id = :sampleId - ]]> - <query-param name="sampleId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="catchBatch"> - <![CDATA[ - SELECT - cb.id AS catchBatchId, - cbQm.numericalValue as totalWeight, - b1.id AS id1, - b1.samplingRatioText as samplingRatioText1, - (select qm.numericalValue from QuantificationMeasurementImpl qm where qm.batch.id=b1.id and qm.isReferenceQuantification=true) AS weight1, - (select sm.qualitativeValue.id from SortingMeasurementImpl sm where sm.sortingBatch.id=b1.id and sm.pmfm.id=:pmfmIdSorted) AS qv2, - b2.id AS id2, - b2.samplingRatioText AS samplingRatioText2, - (select qm.numericalValue from QuantificationMeasurementImpl qm where qm.batch.id=b2.id and qm.isReferenceQuantification=true) AS weight2, - (select sm.qualitativeValue.id from SortingMeasurementImpl sm where sm.sortingBatch.id=b2.id and sm.pmfm.id=:pmfmIdSortingType) AS qv2 - FROM - CatchBatchImpl cb - INNER JOIN cb.childBatchs b1 - LEFT OUTER JOIN b1.childBatchs b2 - LEFT OUTER JOIN cb.quantificationMeasurements cbQm - WHERE - cb.fishingOperation.id = :fishingOperationId - AND ( - cbQm is null - OR cbQm.isReferenceQuantification=true - ) - ORDER BY b1.id, b2.id - ]]> - <query-param name="fishingOperationId" type="java.lang.Integer"/> - <query-param name="pmfmIdSorted" type="java.lang.Integer"/> - <query-param name="pmfmIdSortingType" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="allSpeciesBatchFrequency"> - <![CDATA[ - SELECT - b.id as batchId, - b.individualCount AS individualCount, - qm.numericalValue AS weight, - b.comments AS comments, - sm.pmfm.id AS pmfmId, - sm.numericalValue AS numValue - FROM - SortingBatchImpl b - LEFT OUTER JOIN b.sortingMeasurements sm - LEFT OUTER JOIN b.quantificationMeasurements qm - WHERE - b.parentBatch.id=:parentBatchId - AND ( - qm is null - OR qm.isReferenceQuantification=true - ) - AND sm.numericalValue is not null - AND sm.pmfm.parameter.isAlphanumeric=false - AND sm.pmfm.parameter.isQualitative=false - ORDER BY sm.numericalValue - ]]> - <query-param name="parentBatchId" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="allAttachment"> - <![CDATA[ - SELECT - m.objectType.code as attachmentObjectType, - m.objectId AS attachmentObjectId, - m.id AS attachmentId, - m.path AS attachmentPath, - m.name AS attachmentName, - m.comments as attachmentComment - FROM - MeasurementFileImpl m - WHERE - m.objectId = :objectId - AND m.objectType.code = :objectTypeCode - ORDER BY m.id - ]]> - <query-param name="objectId" type="java.lang.Integer"/> - <query-param name="objectTypeCode" type="java.lang.Integer"/> - </query> - - <query cacheable="true" name="attachment"> - <![CDATA[ - SELECT - m.objectType.code as attachmentObjectType, - m.objectId AS attachmentObjectId, - m.id AS attachmentId, - m.path AS attachmentPath, - m.name AS attachmentName, - m.comments as attachmentComment - FROM - MeasurementFileImpl m - WHERE - m.id = :attachmentId - ]]> - <query-param name="attachmentId" type="java.lang.Integer"/> - </query> - -  -  -  - -  - <query cacheable="true" name="pmfmById"> - <![CDATA[ - SELECT - p.id AS pmfmId, - p.parameter.name AS parameterName, - p.matrix.name AS matrixName, - p.fraction.name AS fractionName, - p.method.name AS methodName, - p.parameter.isAlphanumeric AS isAlphanumeric, - p.parameter.isQualitative AS isQualitative, - p.signifFiguresNumber, - p.maximumNumberDecimals, - p.precision, - case when (p.unit.id = :unitIdNone) then '' else p.unit.symbol end AS symbol, - p.status AS status - FROM PmfmImpl p - WHERE - p.status.code IN (:statusValidCode, :statusTemporaryCode) - AND p.parameter.isCalculated = false - AND p.id= :pmfmId - ]]> - <query-param name="pmfmId" type="java.lang.Integer"/> - <query-param name="unitIdNone" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="pmfmQualitativeValues"> - <![CDATA[ - SELECT - qv.id AS id, - qv.name, - case when (qv.description is null) then qv.name else qv.description end AS description, - qv.status AS status - FROM - PmfmImpl p JOIN p.qualitativeValues qv - WHERE - p.id= :pmfmId - AND qv.status.code IN (:statusValidCode, :statusTemporaryCode) - ]]> - <query-param name="pmfmId" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="allPmfm"> - <![CDATA[ - SELECT - p.id AS pmfmId, - p.parameter.name AS parameterName, - p.matrix.name AS matrixName, - p.fraction.name AS fractionName, - p.method.name AS methodName, - p.parameter.isAlphanumeric AS isAlphanumeric, - p.parameter.isQualitative AS isQualitative, - p.signifFiguresNumber, - p.maximumNumberDecimals, - p.precision, - case when (p.unit.id = :unitIdNone) then '' else p.unit.symbol end AS symbol, - p.status AS status - FROM PmfmImpl p - WHERE - p.status.code IN (:statusValidCode, :statusTemporaryCode) - AND p.parameter.isCalculated = false - ]]> - <query-param name="unitIdNone" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="allLocationsByLevelAndClassificiation"> - <![CDATA[ - SELECT - l.id as locationId, - l.label as locationLabel, - l.name as locationName, - l.status as status - FROM LocationImpl l - WHERE - l.locationLevel.id = :locationLevelId - AND l.locationClassification.id = :locationClassificationId - AND l.status.code IN (:statusValidCode, :statusTemporaryCode) - ]]> - <query-param name="locationLevelId" type="java.lang.Integer"/> - <query-param name="locationClassificationId" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="locationById"> - <![CDATA[ - SELECT - l.id as locationId, - l.label as locationLabel, - l.name as locationName, - l.status as status - FROM - LocationImpl l - WHERE - l.id = :locationId - ]]> - <query-param name="locationId" type="java.lang.Integer"/> - </query> - - -  - <query cacheable="true" name="allObjectType"> - <![CDATA[ - SELECT - p.code AS objectTypeCode, - p.name AS objectTypeName, - p.description AS objectTypeDescription - FROM ObjectTypeImpl p - ]]> - </query> - -  - <query cacheable="true" name="objectType"> - <![CDATA[ - SELECT - p.code AS objectTypeCode, - p.name AS objectTypeName, - p.description AS objectTypeDescription - FROM ObjectTypeImpl p - WHERE p.code = :objectTypeCode - ]]> - <query-param name="objectTypeCode" type="java.lang.String"/> - </query> - -  -  -  - -  - <query cacheable="true" name="allFishingOperationLocationByParent"> - <![CDATA[ - SELECT - l.id as locationId, - l.label as locationLabel, - l.name as locationName, - l.status as status - FROM - LocationImpl l, - LocationHierarchyImpl lh - WHERE - l.status.code IN (:statusValidCode, :statusTemporaryCode) - AND l.locationLevel.id = :locationLevelId - AND l.locationClassification.id = :locationClassificationId - AND l.id = lh.locationHierarchyPk.location.id - AND lh.locationHierarchyPk.parent.id = :parentId - AND lh.locationHierarchyPk.parent.locationLevel.id = :parentLocationLevelId - ]]> - <query-param name="parentId" type="java.lang.Integer"/> - <query-param name="parentLocationLevelId" type="java.lang.Integer"/> - <query-param name="locationLevelId" type="java.lang.Integer"/> - <query-param name="locationClassificationId" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="allVessels"> - <![CDATA[ - SELECT - v.code AS vesselCode, - vrp.registrationCode AS nationalRegistrationCode, - vrp.internationalRegistrationCode as internationalRegistrationCode, - vf.name AS vesselName, - v.status AS status - FROM - VesselImpl v - INNER JOIN v.vesselRegistrationPeriods AS vrp - LEFT OUTER JOIN v.vesselFeatures AS vf - WHERE - v.vesselType.id = :vesselTypeId - AND v.status.code IN (:statusValidCode, :statusTemporaryCode) - AND vrp.vesselRegistrationPeriodPk.startDateTime <= :refDate - AND vf.startDateTime <= :refDate - AND coalesce(vrp.endDateTime, :refDate) >= :refDate - AND coalesce(vf.endDateTime, :refDate) >= :refDate - ) - ]]> - <query-param name="vesselTypeId" type="java.lang.Integer"/> - <query-param name="refDate" type="java.util.Date"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="vessel"> - <![CDATA[ - SELECT - v.code AS vesselCode, - vrp.registrationCode AS nationalRegistrationCode, - vrp.internationalRegistrationCode as internationalRegistrationCode, - vf.name AS vesselName, - v.status AS status - FROM - VesselImpl v - INNER JOIN v.vesselRegistrationPeriods AS vrp - LEFT OUTER JOIN v.vesselFeatures AS vf - WHERE - v.code = :vesselCode - AND v.status.code IN (:statusValidCode, :statusTemporaryCode) - AND NOT(coalesce(vrp.endDateTime, '2999-12-31 00:00:00') < coalesce(:refDate,sysdate) - OR vrp.vesselRegistrationPeriodPk.startDateTime > coalesce(:refDate,sysdate) - ) - ORDER BY vf.startDateTime DESC - ]]> - <query-param name="vesselCode" type="java.lang.String"/> - <query-param name="refDate" type="java.util.Date"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="allGears"> - <![CDATA[ - SELECT - g.id, - g.label, - g.name, - g.gearClassification, - g.status AS status - FROM GearImpl g - WHERE - g.gearClassification.id= :gearClassificiationId - AND g.status.code IN (:statusValidCode, :statusTemporaryCode) - ]]> - <query-param name="gearClassificiationId" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="gear"> - <![CDATA[ - SELECT - g.id, - g.label, - g.name, - g.gearClassification, - g.status AS status - FROM GearImpl g - WHERE - g.id = :gearId - ]]> - <query-param name="gearId" type="java.lang.Integer"/> - </query> - -  - <query cacheable="true" name="allPersons"> - <![CDATA[ - SELECT DISTINCT - p.id, - p.lastname, - p.firstname, - p.department.code, - p.status - FROM - PersonImpl p - LEFT OUTER JOIN p.profils pp - WHERE - p.status.code IN (:statusValidCode, :statusTemporaryCode) - AND pp.id IN ( - :observerProfilId, - :projectMemberProfilId, - :userProfilId - ) - AND p.department.code LIKE concat(:departementPrefixCode , '%') - ]]> - <query-param name="observerProfilId" type="java.lang.Integer"/> - <query-param name="projectMemberProfilId" type="java.lang.Integer"/> - <query-param name="userProfilId" type="java.lang.Integer"/> - <query-param name="statusValidCode" type="java.lang.String"/> - <query-param name="statusTemporaryCode" type="java.lang.String"/> - <query-param name="departementPrefixCode" type="java.lang.String"/> - </query> - -  - <query cacheable="true" name="person"> - <![CDATA[ - SELECT DISTINCT - p.id, - p.lastname, - p.firstname, - p.department.code, - p.status - FROM PersonImpl p - WHERE p.id = :personId - ]]> - <query-param name="personId" type="java.lang.Integer"/> - </query> - -  -  -  - - -  -  -  - - -</hibernate-mapping> Added: trunk/tutti-persistence/src/main/resources/tutti-conf.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/tutti-conf.xml (rev 0) +++ trunk/tutti-persistence/src/main/resources/tutti-conf.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -0,0 +1,22 @@ +<?xml version="1.0" encoding="UTF-8"?> +<beans xmlns="http://www.springframework.org/schema/beans" + xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" + xmlns:context="http://www.springframework.org/schema/context" + xsi:schemaLocation=" + http://www.springframework.org/schema/beans + http://www.springframework.org/schema/beans/spring-beans-3.0.xsd + http://www.springframework.org/schema/context + http://www.springframework.org/schema/context/spring-context-3.0.xsd"> + + <context:property-placeholder + location="classpath:conf.properties" + ignore-resource-not-found="false" + ignore-unresolvable="true" + system-properties-mode="OVERRIDE"/> + <context:property-placeholder + location="classpath:enumerations-v3.properties" + ignore-resource-not-found="false" + ignore-unresolvable="true" + system-properties-mode="OVERRIDE"/> + +</beans> \ No newline at end of file Property changes on: trunk/tutti-persistence/src/main/resources/tutti-conf.xml ___________________________________________________________________ Added: svn:mime-type + text/xml Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties =================================================================== --- trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/resources/tutti-db-enumerations.properties 2014-04-21 13:27:20 UTC (rev 1718) @@ -21,316 +21,42 @@ # <http://www.gnu.org/licenses/gpl-3.0.html>. # #L% ### -# Version de preprod -AcquisitionLevelCode.ACTIVITY=MONTHLY_ACTIVITY -AcquisitionLevelCode.ACTIVITY_CALENDAR=ACTIVITY_CALENDAR -AcquisitionLevelCode.BATCH=BATCH -AcquisitionLevelCode.FISHING_EFFORT_CALENDAR=EFFORT_CALENDAR -AcquisitionLevelCode.FISHING_OPERATION=OPERATION -AcquisitionLevelCode.FISHING_TRIP=FISHING_TRIP -AcquisitionLevelCode.FISHING_TRIP_PHYSICAL_GEAR=OBSERVED_FISHING_TRIP_PHYSICAL_GEAR -AcquisitionLevelCode.LANDING=LANDING -AcquisitionLevelCode.MONTHLY_EFFORT=MONTHLY_FISHING_EFFORT -AcquisitionLevelCode.OBSERVED_LANDING=OBSERVED_LANDING -AcquisitionLevelCode.OBSERVED_SALE=OBSERVED_SALE -AcquisitionLevelCode.OBSERVED_TRIP_ON_BOARD=OBSERVED_FISHING_TRIP -AcquisitionLevelCode.OPERATION=OPERATION_fake -AcquisitionLevelCode.OPERATION_GROUP=OPERATION_GROUP -AcquisitionLevelCode.PHYSICAL_GEAR=PHYSICAL_GEAR_SURVEY -AcquisitionLevelCode.SALE=SALE -AcquisitionLevelCode.SALE_SURVEY=SALE_SURVEY -AcquisitionLevelCode.SAMPLE=SAMPLE -AcquisitionLevelCode.SCIENTIFIC_CRUISE=SCIENTIFIC_CRUISE -AcquisitionLevelCode.VESSEL_PHYSICALFEATURES=VESSEL_PHYSICAL_FEATURES -AcquisitionLevelCode.YEARLYEFFORT=YEARLY_FISHING_EFFORT -AcquisitionLevelCode.CONTROLS_REFERENTIAL=CONTROLS_REFERENTIAL -ActivityCalendarNumericalPmfmIds.GREATER_VALUE_PMFM=241 -ActivityCalendarNumericalPmfmIds.LOWER_VALUE_PMFM=242 -AggregationLevelId.DAY=4 -AggregationLevelId.FISHING_TRIP=9 -AggregationLevelId.HOUR=3 -AggregationLevelId.MONTH=21 -AggregationLevelId.NONE=1 -AggregationLevelId.SEMESTER=7 -AggregationLevelId.TRIMESTER=6 -AggregationLevelId.YEAR=8 -CriteriaType.DEFAULT=0 -CriteriaType.EXISTS=3 -CriteriaType.JOIN=1 -CriteriaType.NOT_EXISTS=4 -CriteriaType.SELECT=2 -DepartmentCode.OUTSIDE=EXTERIEUR -Filters.RESULTS_SIZE_WARNING_VALUE=10000 -FractionId.ALL=1 -FractionId.GEAR=2 -GearClassificationId.CNTS=5 -GearClassificationId.EU=4 -GearClassificationId.FAO=1 -GearClassificationId.SCIENTIFIC_CRUISE=5 -GearUseFeaturesOriginMapping.ACTIVITY_CALENDAR=Activit\u00E9 N-1|<PROGRAM>,Enqu\u00EAteur|<INVESTIGATOR>,Document d\u00E9claratif|<DECLARATIVE>,Ventes|OFIMER -GearUseFeaturesOriginMapping.EFFORT_CALENDAR=Activit\u00E9 N-1|<PROGRAM>,Enqu\u00EAteur|<INVESTIGATOR>,Document d\u00E9claratif|<DECLARATIVE>,Ventes|OFIMER -isActive.ACTIVE=1 -isActive.INACTIVE=0 -isActive.NOT_EXISTS=2 -LocationClassificationId.REGULATION=3 -LocationClassificationId.SECTOR=2 -LocationClassificationId.TERRITORIAL=1 -LocationLabel.FRANCE=FRA -LocationLabel.MEDITERRANEAN_AND_BLACK_SEA=37 -LocationLevelId.CRIEE=7 -LocationLevelId.DEPARTEMENT=32 -LocationLevelId.FAO_ZONE=101 -LocationLevelId.PAYS_ISO3=21 -LocationLevelId.PORT=6 -LocationLevelId.QUARTIER=13 -LocationLevelId.RECTANGLE_STATISTIQUE=113 -LocationLevelId.REGION=31 -LocationLevelId.SOUS_RECTANGLE_STATISTIQUE=114 -ManageDataTypeId.ACTIVITY_CALENDAR=4 -ManageDataTypeId.OBSERVED_FISHING_TRIP_ON_BOARD=5 -ManageDataTypeId.PHYSICAL_GEAR_SURVEY=7 -ManageDataTypeId.SALE=8 -ManageDataTypeId.SCIENTIFIC_CRUISE=9 -MatrixId.FISHING_METIER=6 -MatrixId.GEAR=3 -MatrixId.OPERATION=21 -MatrixId.VESSEL=5 -MatrixId.SUPPORT_WITH_GEAR=17 -MatrixId.SUPPORT_WITH_METIER=18 -MethodId.ALIVE_WEIGHT_EQUIVALENT=5 -MethodId.ESTIMATED=45 -MethodId.HEIGHT_WEIGHT=47 -MethodId.TOTAL_BATCH=283 -OrderTypeId.NORTH_SOUTH_LOCATION_RANK=1 -ParameterCode.ANOTHER_SURVEY=ACCEPT_OTHER_SURVEY -ParameterCode.BULK=SORTED -ParameterCode.CALCULATED_WEIGHT=WEIGHT_CALCULATED -ParameterCode.CONTRACT_CODE=CONTRACT_CODE -ParameterCode.CREW_SIZE=CREW_SIZE -ParameterCode.DATA_RELIABILITY=SURVEY_RELIABILITY -ParameterCode.DISCARD_TYPE=DISCARD_TYPE -ParameterCode.ENGIN_TIME=ENGIN_DURATION -ParameterCode.FISHING_DAY_COUNT=FISHING_DURATION -ParameterCode.GEAR_DEPTH=GEAR_DEPTH -ParameterCode.IS_SAMPLING=IS_SAMPLING -ParameterCode.LANDING_REJECTION=DISCARD_OR_LANDING -ParameterCode.PRESENTATION=DRESSING -ParameterCode.PROCEEDING=TRIP_PROGRESS -ParameterCode.RECEPTION_QUALITY=WELCOME_QUALITY -ParameterCode.SEA_DAY_COUNT=DURATION_AT_SEA -ParameterCode.SEA_STATE=SEA_STATE -ParameterCode.SEX=SEX -ParameterCode.SIZE=LENGTH_TOTAL -ParameterCode.STATUS=QUALITY -ParameterCode.SURVEY_QUALIFICATION=SURVEY_QUALIFICATION -ParameterCode.VALIDATION_PROGRAM=IS_VALIDATED_PRG -ParameterCode.VALIDATION_SUPERVISOR=IS_VALIDATED -ParameterCode.WEIGHT=WEIGHT -ParameterCode.SIZE_UNLI_CAT=SIZE_UNLI_CAT -ParameterCode.SIZE_UE_CAT=SIZE_UE_CAT -ParameterCode.CASE=CASE -ParameterCode.SORTING_TYPE=SORTING_TYPE -ParameterCode.PRESERVATION=PRESERVATION -ParameterCode.DRESSING=DRESSING -ParameterCode.AGE=AGE -ParameterCode.LENGTH_TOTAL=LENGTH_TOTAL -ParameterCode.LONG_CARAPACE=LONG_CARAPACE -ParameterCode.LENGTH_PREANAL=LENGTH_PREANAL -ParameterCode.LENGTH=LENGTH -ParameterCode.LENGTH_CARAPACE=LENGTH_CARAPACE -ParameterCode.LENGTH_FORK=LENGTH_FORK -ParameterCode.LENGTH_LM_FORK=LENGTH_LM_FORK -ParameterCode.LENGTH_MANTLE=LENGTH_MANTLE -ParameterCode.LENGTH_PELVIC=LENGTH_PELVIC -ParameterCode.LENGTH_PRE_SUPRA_CAUDAL=LENGTH_PRE_SUPRA_CAUDAL -ParameterCode.LENGTH_STANDARD=LENGTH_STANDARD -ParameterCode.BEAM_LENGTH=BEAM_LENGTH -ParameterCode.BEAM_TOTAL_LENGTH=BEAM_TOTAL_LENGTH -ParameterCode.GEAR_TOTAL_LENGTH=GEAR_TOTAL_LENGTH -ParameterCode.HEADLINE_LENGTH=HEADLINE_LENGTH -ParameterCode.LBP=LBP -ParameterCode.LG_ENGINS_PERDUS=LG_ENGINS_PERDUS -ParameterCode.LG_RELEVEE=LG_RELEVEE -ParameterCode.LOA=LOA -ParameterCode.LONG=LONG -ParameterCode.LONGLINE_LENGTH=LONGLINE_LENGTH -ParameterCode.LONG_FORK=LONG_FORK -ParameterCode.LONG_MANTLE=LONG_MANTLE -ParameterCode.NET_LENGTH=NET_LENGTH -ParameterCode.SEGMENT_LENGTH=SEGMENT_LENGTH -ParameterCode.SEINE_LENGTH=SEINE_LENGTH -ParameterCode.STD_CURVE_LENGTH=STD_CURVE_LENGTH -ParameterCode.STD_STRAIGTH_LENGTH=STD_STRAIGTH_LENGTH -ParameterCode.SWEEP_LENGTH=SWEEP_LENGTH -ParameterCode.TOTAL_LENGTH_HAULED=TOTAL_LENGTH_HAULED -ParameterCode.TOTAL_LENGTH_SOAKED=TOTAL_LENGTH_SOAKED -ParameterCode.WARP_LENGTH=WARP_LENGTH -ParameterCode.CIRCUMFERENCE=CIRCUMFERENCE -ParameterCode.WIDTH=WIDTH -ParameterGroupId.SURVEY_MEASUREMENT=21 -PmfmId.ALIVE_WEIGHT_CALCULATED=WEIGHT_CALCULATED;1;1;5 -PmfmId.CALCULATED_WEIGHT_CHILDREN_SUM=WEIGHT_CALCULATED;1;1;341 -PmfmId.WEIGHT_SIZE_CALCULATED=WEIGHT_CALCULATED;1;1;47 -PmfmId.WEIGHT_SIZE_EXTRAPOLATE=WEIGHT_CALCULATED;1;1;283 -PmfmId.WEIGHT_TOTAL_CALCULATED=WEIGHT_CALCULATED;1;1;22 -PmfmId.MAX_DURATION_FOR_OPERATION_WITH_GEAR=DUREE_MAX_OPERATION;17;1;1 -PmfmId.MAX_DISTANCE_FOR_OPERATION_WITH_GEAR=DISTANCE_MAX_OPERATION;17;1;1 -PmfmId.MAX_DURATION_FOR_OPERATION_WITH_METIER=DUREE_MAX_OPERATION;18;1;1 -PmfmId.MAX_DISTANCE_FOR_OPERATION_WITH_METIER=DISTANCE_MAX_OPERATION;18;1;1 -PmfmId.STORAGE_STATE=CLOSE_OBSVENTE_STOCK;61;61;21 -ProgramCode.ACTIVITY=SIH-ACTIFLOT -ProgramCode.ACTIVITY_MERGE=SIH-ACTIFLOT-CONFLIT -ProgramCode.DECLARATIVE_FLOW=SIH-ACTIPRED -ProgramCode.PRE_RECOPESCA=SIH-preRECOPESCA -ProgramCode.RECOPESCA=SIH-RECOPESCA -ProgramCode.SIH_OBSERVED_FISHING_TRIP_ON_BOARD=SIH-OBSMER -ProgramCode.SIH_OBSMER=SIH-OBSMER -ProgramCode.SIH_STATPECHE_CONFLIT=SIH-ACTIFLOT-CONFLIT -ProgramCode.STAT_PECHE=SIH-ACTIFLOT -SaleDateControlByProgram.MAX_DAYS_AFTER_FISHING_TRIP=SIH-OBSMER|3,SIH-OBSVENTE|3 -BatchControl.SORTING_CRITERIA_PARAMETER_NEEDS_REFERENCE_WEIGHT=DRESSING,SIZE_UNLI_CAT,SEX -BatchControl.CHILDREN_SUM_DIFFERENCE_BETWEEN_REFERENCE_AND_SIZE_WEIGHT_RULE1_THRESHOLD_PERCENT=SIH-OBSMER|50,SIH-OBSVENTE|50 -BatchControl.CHILDREN_SUM_DIFFERENCE_BETWEEN_REFERENCE_AND_SIZE_WEIGHT_RULE1_KILO_MIN=SIH-OBSMER|5,SIH-OBSVENTE|5 -BatchControl.CHILDREN_SUM_DIFFERENCE_BETWEEN_REFERENCE_AND_SIZE_WEIGHT_RULE2_THRESHOLD_PERCENT=SIH-OBSMER|100,SIH-OBSVENTE|100 -BatchControl.CHILDREN_SUM_DIFFERENCE_BETWEEN_REFERENCE_AND_SIZE_WEIGHT_RULE2_KILO_MAX=SIH-OBSMER|5,SIH-OBSVENTE|5 -ProgramManagedDataTypeMapping.FISHING_TRIP=SIH-OBSMER|5 -ProgramManagedDataTypeMapping.SALE=SIH-OBSVENTE|8 -ProgramObjectTypeMapping.FISHING_TRIP=SIH-OBSMER|OBSERVED_FISHING_TRIP -ProgramObjectTypeMapping.SALE=SIH-OBSVENTE|OBSERVED_SALE -ProgramPrivilegeId.MANAGER=1 -ProgramPrivilegeId.QUALIFICATOR=5 -ProgramPrivilegeId.RECORDER=2 -ProgramPrivilegeId.VALIDATOR=4 -ProgramPrivilegeId.VIEWER=3 -QualitativeValueId.ABNORMAL=328 -QualitativeValueId.ANOTHER_SURVEY_NO=847 -QualitativeValueId.ANOTHER_SURVEY_YES=846 -QualitativeValueId.DIRECT_SURVEY=965 -QualitativeValueId.DISCARD_TYPE_ANIMALS=407 -QualitativeValueId.ESTIMATE_SURVEY=967 -QualitativeValueId.FRY_STATUS=142 -QualitativeValueId.INDIRECT_SURVEY=966 -QualitativeValueId.INTEGRAL_PRESENTATION=139 -QualitativeValueId.IS_SAMPLING=415 -QualitativeValueId.LANDING=203 -QualitativeValueId.NON_SEXED_SEX=302 -QualitativeValueId.VALIDATION_PROGRAM_DO_CORRECTION=942 -QualitativeValueId.VALIDATION_SUPERVISOR_NO=418 -QualitativeValueId.VALIDATION_SUPERVISOR_YES=417 -QualitativeValueId.SORTING_TYPE_TPN=1746 -QualitativeValueId.SORTING_TYPE_TCC=1747 -QualitativeValueId.REJECTED=204 -QualitativeValueId.VRAC=311 -QualityFlagCode.BAD=4 -QualityFlagCode.CORRECTED=5 -QualityFlagCode.DOUBTFUL=3 -QualityFlagCode.GOOD=1 -QualityFlagCode.INCOMPLETE=8 -QualityFlagCode.MISSING=9 -QualityFlagCode.NOTQUALIFIED=0 -QualityFlagCode.OUT_OF_STAT=2 -QualityFlagConfiguration.COLOR_MAPPING=GOOD|0,128,0;DOUBTFUL|255,128,0;BAD|255,0,0;CORRECTED|0,128,255 -QualityFlagConfiguration.INVALID_FLAG_LIST=2,4,8,9 -SaleTypeId.COOPERATIVE=-5 -SaleTypeId.CRIEE=1 -SaleTypeId.HORS_CONTROLE=9 -SaleTypeId.MARCHE_EXTERIEUR=5 -SaleTypeId.MARCHE_INTERIEUR=4 -SaleTypeId.MAREYEUR=2 -SaleTypeId.POISSONNIER=-6 -SaleTypeId.PRODUCTEUR=6 -SaleTypeId.RESTAURATION_COLLECTIVE=-3 -SaleTypeId.RESTAURATION_PRIVEE=-2 -SaleTypeId.RETRAIT_OP=7 -SaleTypeId.RETRAIT_SANITAIRE=8 -SaleTypeId.SUPERMARCHE=-4 -SaleTypeId.TRANSFORMATEUR=3 -SaleTypeId.VENTE_PARTICULIER=-1 -SamplingSchemeControl.MANDATORY_PROGRAM_LIST=SIH-OBSVENTE -SpatialItemTypeId.DEPTH_GRADIENT=1 -SpatialItemTypeId.DISTANCE_TO_COAST_GRADIENT=3 -SpatialItemTypeId.GEAR=5 -SpatialItemTypeId.METIER=7 -SpatialItemTypeId.NEARBY_SPECIFIC_AREA=2 -SpatialItemTypeId.TAXON_GROUP=4 -StatusCode.DELETED=3 -StatusCode.DISABLE=0 -StatusCode.ENABLE=1 -StatusCode.TEMPORARY=2 -StorageStateValues.CLOSED=69 -SurveyQualificationId.DIRECT=0 -SurveyQualificationId.ESTIMATION=0 -SurveyQualificationId.INDIRECT=0 -SurveyQualificationId.PREDOCUMENTATION=0 -SurveyQualificationId.UNKNOWN=0 -SynchronizationStatus.DELETED=DELETED -SynchronizationStatus.DIRTY=DIRTY -SynchronizationStatus.READY_TO_SYNCHRONIZE=READY_TO_SYNC -SynchronizationStatus.SYNCHRONIZED=SYNC -TaxonGroupId.FISH=1712 -TaxonGroupTypeCode.COMMERCIAL_SPECIES=2 -TaxonGroupTypeCode.METIER_SPECIES=3 -TaxonomicLevelCode.SPECIES=SPECIES -TaxonomicLevelCode.VARIETY=SUBSPECIES -TranscribingSideId.IN=2 -TranscribingSideId.IN_OUT=3 -TranscribingSideId.OUT=1 -TranscribingSystemId.FAO=4 -TranscribingSystemId.HARMONIE=5 -TranscribingSystemId.OFIMER=3 -TranscribingSystemId.SIPA=2 -UnitId.DAY=17 -UnitId.DECIMAL_HOURS=9 -UnitId.MILLIMETER=6 -UnitId.NONE=1 -UserProfilId.OBSERVER=2 -UserProfilId.PROJECT_MEMBER=3 -UserProfilId.REFERENTIAL_ADMINISTRATOR=1 -UserProfilId.USER=4 -VesselTypeId.FISHING_VESSEL=1 -VesselTypeId.FISHING_VESSEL_GROUP=2 -VesselTypeId.PLEASURE_BOAT=4 -VesselTypeId.SCIENTIFIC_RESEARCH_VESSEL=8 -VesselTypeId.SHELLFISH_GATHERER=3 -ZoneCompetenceMapping.GROUND=Corse|394;391,Guadeloupe|430,Guyanne|423,La Réunion|433,Martinique|425,Mayotte|424;429,Méditerranée|408;410;420;415;419;415;419,Mer du nord manche atlantique|386;387;388;389;390;392;393;395;396;397;398;399;400;401;402;403;404;405;406;407;409;411;412;414;416;417;418;421;422;432;435;436,Saint Pierre et Miquelon|434 -ZoneCompetenceMapping.SEA=Corse|4022,Guadeloupe|4020,Guyanne|4020,La Réunion|4028,Martinique|4020,Mayotte|4028,Méditerranée|4022,Mer du nord manche atlantique|4018,Saint Pierre et Miquelon|4017 -ZoneCompetenceMapping.DEFAULT_LOCATION_LEVEL=Corse|142,Guadeloupe|158;159,Guyanne|154;156,La Réunion|151;152,Martinique|158;159,Mayotte|,Méditerranée|142,Mer du nord manche atlantique|113;114,Saint Pierre et Miquelon|101 +#MatrixId.SUPPORT_WITH_GEAR=17 +#MatrixId.SUPPORT_WITH_METIER=18 +#LocationLevelId.RECTANGLE_STATISTIQUE_MED=145 -# 10/01/2012 BLA Need to retrieve a Location from a given position (Lat/Long) -LocationLevelId.RECTANGLE_STATISTIQUE_MED=145 - ################################################################################ ### Ajout pour Tutti ########################################################### ################################################################################ -# zone d'étude -LocationLevelId.PROGRAM=301 -# strate -LocationLevelId.STRATA=302 -# sous strate -LocationLevelId.SUB_STRATA=303 -# localité -LocationLevelId.LOCALITE=304 -# radiale -LocationLevelId.RADIALE=305 +# zone d'étude SCIENTIFIC_CRUISE_PROGRAM +#LocationLevelId.PROGRAM=301 +# strate SCIENTIFIC_CRUISE_STRATA +#LocationLevelId.STRATA=302 +# sous strate SCIENTIFIC_CRUISE_SUB_STRATA +#LocationLevelId.SUB_STRATA=303 +# localité SCIENTIFIC_CRUISE_LOCALITE +#LocationLevelId.LOCALITE=304 +# radiale SCIENTIFIC_CRUISE_RADIALE +#LocationLevelId.RADIALE=305 # Catégorie Sex -PmfmId.SEX=196 +#PmfmId.SEX=196 QualitativeValueId.SEX_UNDEFINED=299 -QualitativeValueId.SEX_MALE=300 -QualitativeValueId.SEX_FEMALE=301 +#QualitativeValueId.SEX_MALE=300 +#QualitativeValueId.SEX_FEMALE=301 # Catégorie classe de tri -PmfmId.SIZE_CATEGORY=198 -QualitativeValueId.SIZE_SMALL=307 -QualitativeValueId.SIZE_MEDIUM=306 -QualitativeValueId.SIZE_BIG=305 +#PmfmId.SIZE_CATEGORY=198 +#QualitativeValueId.SIZE_SMALL=307 +#QualitativeValueId.SIZE_MEDIUM=306 +#QualitativeValueId.SIZE_BIG=305 # Catégorie Age -PmfmId.AGE=1430 +#PmfmId.AGE=1430 # Catégorie maturité -PmfmId.MATURITY=174 +#PmfmId.MATURITY=174 QualitativeValueId.MATURITY_1=272 QualitativeValueId.MATURITY_2=273 QualitativeValueId.MATURITY_3=274 @@ -338,44 +64,44 @@ QualitativeValueId.MATURITY_5=276 # Catégorie macro-déchet -PmfmId.MARINE_LITTER_TYPE=1421 +#PmfmId.MARINE_LITTER_TYPE=1421 # Classe de taille macro-déchet -PmfmId.MARINE_LITTER_SIZE_CATEGORY=1422 +#PmfmId.MARINE_LITTER_SIZE_CATEGORY=1422 # Pour stocker Cruise.surveyPart -PmfmId.SURVEY_PART=1432 +#PmfmId.SURVEY_PART=1432 -PmfmId.STATION_NUMBER=1243 -PmfmId.TRAWL_DISTANCE=113 +#PmfmId.STATION_NUMBER=1243 +#PmfmId.TRAWL_DISTANCE=113 -PmfmId.HAUL_VALID=1163 -QualitativeValueId.HAUL_VALID_YES=1575 -QualitativeValueId.HAUL_VALID_NO=1576 +#PmfmId.HAUL_VALID=1163 +#QualitativeValueId.HAUL_VALID_YES=1575 +#QualitativeValueId.HAUL_VALID_NO=1576 -PmfmId.RECTILINEAR_OPERATION=192 -QualitativeValueId.RECTILINEAR_OPERATION_YES=277 -QualitativeValueId.RECTILINEAR_OPERATION_NO=278 +#PmfmId.RECTILINEAR_OPERATION=192 +#QualitativeValueId.RECTILINEAR_OPERATION_YES=277 +#QualitativeValueId.RECTILINEAR_OPERATION_NO=278 # PSFM "Nombre de poche" d'un chalut (écran campagne) -PmfmId.MULTIRIG_NUMBER=1420 +#PmfmId.MULTIRIG_NUMBER=1420 # PSFM "Liste des poches observées" (écran opération) -PmfmId.MULTIRIG_AGGREGATION=1424 +#PmfmId.MULTIRIG_AGGREGATION=1424 # PSFM "Poids - observation par une observateur" (écran captures, onglet espèce, benthos, etc) -PmfmId.WEIGHT_MEASURED=220 +#PmfmId.WEIGHT_MEASURED=220 # PSFM "Vrac/Hors Vrac" - "Organisation des données campagnes" -PmfmId.SORTED_UNSORTED=1428 -QualitativeValueId.SORTED_VRAC=311 -QualitativeValueId.SORTED_HORS_VRAC=310 -QualitativeValueId.UNSORTED=2146 +#PmfmId.SORTED_UNSORTED=1428 +#QualitativeValueId.SORTED_VRAC=311 +#QualitativeValueId.SORTED_HORS_VRAC=310 +#QualitativeValueId.UNSORTED=2146 -PmfmId.SCIENTIFIC_CRUISE_SORTING_TYPE=1429 -QualitativeValueId.SORTING_TYPE_SPECIES=2147 -QualitativeValueId.SORTING_TYPE_BENTHOS=2148 -QualitativeValueId.SORTING_TYPE_PLANCTON=2149 -QualitativeValueId.SORTING_TYPE_MARINE_LITTER=2150 -QualitativeValueId.SORTING_TYPE_ACCIDENTAL_CATCH=2151 +#PmfmId.SCIENTIFIC_CRUISE_SORTING_TYPE=1429 +#QualitativeValueId.SORTING_TYPE_SPECIES=2147 +#QualitativeValueId.SORTING_TYPE_BENTHOS=2148 +#QualitativeValueId.SORTING_TYPE_PLANCTON=2149 +#QualitativeValueId.SORTING_TYPE_MARINE_LITTER=2150 +#QualitativeValueId.SORTING_TYPE_ACCIDENTAL_CATCH=2151 PmfmId.SCIENTIFIC_CRUISE_SORTING_TYPE_2=1431 QualitativeValueId.SORTING_TYPE_2_ALIVE_NOT_ITEMIZED=2161 @@ -383,14 +109,14 @@ QualitativeValueId.SORTING_TYPE_2_ALIVE_ITEMIZED=2160 # PSFM "Ouverture verticale (chalut ou drague)" (pour export operation) -PmfmId.VERTICAL_OPENING=832 +#PmfmId.VERTICAL_OPENING=832 # PSFM "Ouverture Horizontale aux pointes d'ailes" (pour export operation) -PmfmId.HORIZONTAL_OPENING_WING=827 +#PmfmId.HORIZONTAL_OPENING_WING=827 # PSFM "Ouverture horizontale aux panneaux" (pour export operation) -PmfmId.HORIZONTAL_OPENING_DOOR=830 +#PmfmId.HORIZONTAL_OPENING_DOOR=830 #PSFM "Remis à l'eau mort ou vivant" -PmfmId.DEAD_OR_ALIVE=1393 +#PmfmId.DEAD_OR_ALIVE=1393 # PSFM "Pour référencer un autre id de pmfm" PmfmId.ID_PSFM=1433 @@ -400,24 +126,24 @@ PmfmId.OTOLITHE_ID=1436 # (20=observateur volant, 95=Administrateur SIH) -> L'avantage du 20 est qu'il est inactif (=20), donc plus facilement detectable -PersonId.UNKNOWN_RECORDER_PERSON=20 +#PersonId.UNKNOWN_RECORDER_PERSON=20 UserProfilId.DEPARTEMENT_PREFIX=PDG- # 181=PDG-RBE (à confirmer par Vincent) -DepartmentId.UNKNOWN_RECORDER_DEPARTMENT=181 +#DepartmentId.UNKNOWN_RECORDER_DEPARTMENT=181 -ProgramCode.SCIENTIFIC_CRUISE_PREFIX=CAM- +#ProgramCode.SCIENTIFIC_CRUISE_PREFIX=CAM- -ObjectTypeCode.SCIENTIFIC_CRUISE=SCIENTIFIC_CRUISE -ObjectTypeCode.OPERATION=OPERATION +#ObjectTypeCode.SCIENTIFIC_CRUISE=SCIENTIFIC_CRUISE +#ObjectTypeCode.OPERATION=OPERATION ObjectTypeCode.CATCH_BATCH=CATCH_BATCH -ObjectTypeCode.BATCH=BATCH -ObjectTypeCode.SAMPLE=SAMPLE +#ObjectTypeCode.BATCH=BATCH +#ObjectTypeCode.SAMPLE=SAMPLE -VesselPersonRoleId.SCIENTIFIC_CRUISE_MANAGER=2 -VesselPersonRoleId.SORT_ROOM_MANAGER=3 -VesselPersonRoleId.RECORDER_PERSON=4 +#VesselPersonRoleId.SCIENTIFIC_CRUISE_MANAGER=2 +#VesselPersonRoleId.SORT_ROOM_MANAGER=3 +#VesselPersonRoleId.RECORDER_PERSON=4 TranscribingTypeId.TAXINOMIE_REFTAX_MNEMONIQUE=55 TranscribingTypeId.TAXINOMIE_COMMUN_NOM_VERNACULAIRE=56 Modified: trunk/tutti-persistence/src/main/resources/tuttiBeanRefFactory.xml =================================================================== --- trunk/tutti-persistence/src/main/resources/tuttiBeanRefFactory.xml 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/main/resources/tuttiBeanRefFactory.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -29,14 +29,12 @@ http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.0.xsd"> - <import resource="classpath*:applicationContext-conf.xml"/> - <bean id="TuttiBeanRefFactory" class="org.springframework.context.support.ClassPathXmlApplicationContext"> <constructor-arg> <list> - <value>classpath:applicationContext-conf.xml</value> - <value>classpath:applicationContext-dataSource-${dataSource.type}.xml</value> + <value>classpath:applicationContext-conf-tutti.xml</value> + <value>classpath:applicationContext-dataSource-local.xml</value> <value>classpath:applicationContext-entities.xml</value> <value>classpath:applicationContext-service.xml</value> <value>classpath:applicationContext-service-tutti.xml</value> Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceWriteTest.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceWriteTest.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -75,7 +75,7 @@ long buildTime = System.nanoTime(); attachment.setName("AttachmentName-" + buildTime); attachment.setComment("AttachmentComment-" + buildTime); - File fileToAttach = dbResource.getConfig().getDbConfigurationPath(); + File fileToAttach = dbResource.getConfig().getConfigFile(); Attachment savedAttachment = service.createAttachment(attachment, fileToAttach); assertAttachment(attachment, savedAttachment); Modified: trunk/tutti-persistence/src/test/resources/beanRefFactoryWitNoDb.xml =================================================================== --- trunk/tutti-persistence/src/test/resources/beanRefFactoryWitNoDb.xml 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-persistence/src/test/resources/beanRefFactoryWitNoDb.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -33,7 +33,7 @@ class="org.springframework.context.support.ClassPathXmlApplicationContext"> <constructor-arg> <list> - <value>applicationContext-conf.xml</value> + <value>classpath:applicationContext-conf-tutti.xml</value> <value>applicationContext-service-resources.xml</value> </list> </constructor-arg> Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -220,6 +220,11 @@ driver.sanityDb(); } + @Override + public void clearCache(String cacheName) { + driver.clearCache(cacheName); + } + public static final DateFormat EXPORT_DATE_FORMAT = new SimpleDateFormat("yyyy-MM-dd"); public static final String EXPORT_DIRECTORY_FORMAT = "tutti-%s-%s"; @@ -857,8 +862,8 @@ } @Override - public Caracteristic getHorizontalOpeningWingCaracteristic() { - return driver.getHorizontalOpeningWingCaracteristic(); + public Caracteristic getHorizontalOpeningWingsCaracteristic() { + return driver.getHorizontalOpeningWingsCaracteristic(); } @Override Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/TuttiServiceContext.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/TuttiServiceContext.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/TuttiServiceContext.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -29,13 +29,12 @@ import com.google.common.cache.CacheLoader; import com.google.common.cache.LoadingCache; import com.opensymphony.xwork2.util.ValueStack; -import org.nuiton.jaxx.application.ApplicationTechnicalException; import fr.ifremer.tutti.TuttiConfiguration; -import fr.ifremer.tutti.persistence.RessourceClassLoader; import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; import org.apache.commons.io.IOUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; +import org.nuiton.jaxx.application.ApplicationTechnicalException; import org.nuiton.validator.xwork2.XWork2ValidatorUtil; import java.io.Closeable; @@ -65,19 +64,14 @@ protected final TuttiDataContext dataContext; - protected final RessourceClassLoader resourceLoader; - protected final LoadingCache<Class<? extends TuttiService>, TuttiService> services; - public TuttiServiceContext(RessourceClassLoader resourceLoader, - TuttiConfiguration config) { - this(resourceLoader, config, new TuttiDataContext()); + public TuttiServiceContext(TuttiConfiguration config) { + this(config, new TuttiDataContext()); } - public TuttiServiceContext(RessourceClassLoader resourceLoader, - TuttiConfiguration config, + public TuttiServiceContext(TuttiConfiguration config, TuttiDataContext dataContext) { - this.resourceLoader = resourceLoader; this.config = config; this.dataContext = dataContext; // add datacontext in shared valueStack @@ -103,10 +97,6 @@ return config; } - public RessourceClassLoader getResourceLoader() { - return resourceLoader; - } - public TuttiDataContext getDataContext() { return dataContext; } Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/TuttiExportService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/TuttiExportService.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/TuttiExportService.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -115,7 +115,7 @@ weightComputingService = getService(WeightComputingService.class); verticalOpeningCaracteristic = persistenceService.getVerticalOpeningCaracteristic(); - horizontalOpeningWingCaracteristic = persistenceService.getHorizontalOpeningWingCaracteristic(); + horizontalOpeningWingCaracteristic = persistenceService.getHorizontalOpeningWingsCaracteristic(); horizontalOpeningDoorCaracteristic = persistenceService.getHorizontalOpeningDoorCaracteristic(); weightMeasuredCaracteristic = persistenceService.getWeightMeasuredCaracteristic(); pmfmIdCaracteristic = persistenceService.getPmfmIdCaracteristic(); Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/referential/TuttiReferentialSynchronizeService.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -24,17 +24,16 @@ * #L% */ +import com.google.common.collect.ImmutableSet; +import fr.ifremer.adagio.core.service.technical.synchro.ReferentialSynchroContext; import fr.ifremer.adagio.core.service.technical.synchro.ReferentialSynchroResult; import fr.ifremer.adagio.core.service.technical.synchro.ReferentialSynchroService; -import fr.ifremer.tutti.TuttiConfiguration; -import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.service.TuttiPersistenceServiceLocator; import fr.ifremer.tutti.service.AbstractTuttiService; -import fr.ifremer.tutti.service.PersistenceService; import fr.ifremer.tutti.service.TuttiServiceContext; import java.io.File; -import java.util.Properties; +import java.util.Set; /** * @author tchemit <chemit(a)codelutin.com> @@ -42,40 +41,138 @@ */ public class TuttiReferentialSynchronizeService extends AbstractTuttiService { - protected PersistenceService persistenceService; - protected ReferentialSynchroService synchroService; + protected static Set<String> TABLE_NAMES = ImmutableSet.<String>builder().add( + "STATUS", + "QUALITY_FLAG", + + // PMFM + "UNIT", + "AGGREGATION_LEVEL", + "PARAMETER_GROUP", + "QUALITATIVE_VALUE", + "PARAMETER", + "MATRIX", + "FRACTION", + "FRACTION2MATRIX", + "METHOD", + "PMFM", + "PMFM2QUALITATIVE_VALUE", + + // GEAR + "GEAR_CLASSIFICATION", + "GEAR_CLASSIFICATION_ASSOCIATIO", + "GEAR", + "GEAR_ASSOCIATION", + + // LOCATION + "LOCATION_CLASSIFICATION", + "LOCATION_LEVEL", + "LOCATION_ASSOCIATION", + "LOCATION", + "LOCATION_HIERARCHY", + "LOCATION_HIERARCHY_EXCEPTION", + + // TAXON + "TAXONOMIC_LEVEL", + "REFERENCE_TAXON", + "TAXON_NAME", + "TAXON_INFORMATION", + "TAXON_INFORMATION_HISTORY", + "VIRTUAL_COMPONENT", + "TAXON_NAME_HISTORY", + "REFERENCE_DOCUMENT", + "AUTHOR", + "CITATION", + + // TAXON GROUP + "TAXON_GROUP_TYPE", + "TAXON_GROUP", + "TAXON_GROUP_HISTORICAL_RECORD", + "TAXON_GROUP_INFORMATION", + + // TRANSCRIBING + "TRANSCRIBING_ITEM", + "TRANSCRIBING_ITEM_TYPE", + "TRANSCRIBING_SIDE", + "TRANSCRIBING_SYSTEM", + + // CONVERSION + "ROUND_WEIGHT_CONVERSION", + "WEIGHT_LENGTH_CONVERSION", + "UNIT_CONVERSION", + + // VESSEL + "VESSEL_TYPE", + "VESSEL_REGISTRATION_PERIOD", + "VESSEL_FEATURES", + "VESSEL", + + // PERSON + "USER_PROFIL", + "DEPARTMENT", + "PERSON", + "PERSON2USER_PROFIL", + + // VESSEL_PERSON_ROLE + "VESSEL_PERSON_ROLE", + "VESSEL_PERSON", + + // ORDER + "ORDER_ITEM", + + // PROGRAM (since 3.3.5) + "PROGRAM", + "PROGRAM2LOCATION", + "PROGRAM2LOCATION_CLASSIF", + + // STRATEGY (since 3.5) + "ACQUISITION_LEVEL", + "PROGRAM_PRIVILEGE", + "PROGRAM2DEPARTMENT", + "PROGRAM2PERSON_EXCEPTION", + "PROGRAM2PERSON", + "STRATEGY", + "STRATEGY2MANAGER_PERSON", + "PMFM_APPLIED_STRATEGY", + "APPLIED_STRATEGY", + "PMFM_STRATEGY", + "REFERENCE_TAXON_STRATEGY", + "STRATEGY2GEAR", + // FIXME-tchemit-2014-04-19 This table fails to update + //"APPLIED_PERIOD", + + // OTHER + "PRECISION_TYPE", + "NUMERICAL_PRECISION", + "PHOTO_TYPE", + "OBJECT_TYPE", + "ORDER_TYPE", + "ANALYSIS_INSTRUMENT" + ).build(); + @Override public void setServiceContext(TuttiServiceContext context) { super.setServiceContext(context); synchroService = TuttiPersistenceServiceLocator.getReferentialSynchroService(); - persistenceService = getService(PersistenceService.class); } - public void prepare(File dbDirectory, ReferentialSynchroResult result) { - Properties remoteConnectionProperties = getRemoteProperties(dbDirectory); - synchroService.prepare(remoteConnectionProperties, result); + public ReferentialSynchroContext createSynchroContext(File dbDirectory) { + ReferentialSynchroContext synchroContext = ReferentialSynchroContext.newContext( + TABLE_NAMES, + dbDirectory, + new ReferentialSynchroResult() + ); + return synchroContext; } - public void synchronize(File dbDirectory, - ReferentialSynchroResult result) { - Properties remoteConnectionProperties = getRemoteProperties(dbDirectory); - synchroService.synchronize(remoteConnectionProperties, result); + public void prepare(ReferentialSynchroContext synchroContext) { + synchroService.prepare(synchroContext); } - protected Properties getRemoteProperties(File dbDirectory) { - Properties remoteConnectionProperties = new Properties(); - TuttiConfiguration config = context.getConfig(); - - String jdbcUrl = TuttiEntities.getJdbcUrl(dbDirectory, - config.getDbName()); - - TuttiEntities.fillConnectionProperties(remoteConnectionProperties, - jdbcUrl, - config.getJdbcUsername(), - config.getJdbcPassword()); - return remoteConnectionProperties; + public void synchronize(ReferentialSynchroContext synchroContext) { + synchroService.synchronize(synchroContext); } Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/AbstractServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/AbstractServiceTest.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/AbstractServiceTest.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -53,9 +53,11 @@ protected TuttiServiceContext serviceContext; - protected abstract TuttiServiceContext createServiceContext(RessourceClassLoader loader, - TuttiConfiguration config); +// protected abstract TuttiServiceContext createServiceContext(RessourceClassLoader loader, +// TuttiConfiguration config); + protected abstract TuttiServiceContext createServiceContext(TuttiConfiguration config); + @Before public void setUp() throws Exception { @@ -74,12 +76,12 @@ datadirectory.getAbsolutePath()); applicationConfig.parse(); - RessourceClassLoader loader = - new RessourceClassLoader(getClass().getClassLoader()); +// RessourceClassLoader loader = new RessourceClassLoader(getClass().getClassLoader()); TuttiConfiguration config = new TuttiConfiguration(applicationConfig); - serviceContext = createServiceContext(loader, config); +// serviceContext = createServiceContext(loader, config); + serviceContext = createServiceContext(config); ConverterUtil.deregister(); ConverterUtil.initConverters(); Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/DecoratorServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/DecoratorServiceTest.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/DecoratorServiceTest.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -27,7 +27,6 @@ import com.google.common.collect.Lists; import fr.ifremer.tutti.LabelAware; import fr.ifremer.tutti.TuttiConfiguration; -import fr.ifremer.tutti.persistence.RessourceClassLoader; import fr.ifremer.tutti.persistence.entities.data.Attachment; import fr.ifremer.tutti.persistence.entities.data.Attachments; import fr.ifremer.tutti.persistence.entities.data.Cruise; @@ -75,9 +74,13 @@ private DecoratorService service; + // @Override +// protected TuttiServiceContext createServiceContext(RessourceClassLoader loader, TuttiConfiguration config) { +// return new TuttiServiceContext(loader, config); +// } @Override - protected TuttiServiceContext createServiceContext(RessourceClassLoader loader, TuttiConfiguration config) { - return new TuttiServiceContext(loader, config); + protected TuttiServiceContext createServiceContext(TuttiConfiguration config) { + return new TuttiServiceContext(config); } @Before Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/ServiceDbResource.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/ServiceDbResource.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/ServiceDbResource.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -27,10 +27,8 @@ import com.google.common.collect.Lists; import com.google.common.collect.Maps; import com.google.common.io.Files; -import org.nuiton.jaxx.application.ApplicationIOUtil; import fr.ifremer.tutti.TuttiConfiguration; import fr.ifremer.tutti.TuttiConfigurationOption; -import fr.ifremer.tutti.persistence.RessourceClassLoader; import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.entities.data.Cruise; import fr.ifremer.tutti.persistence.entities.data.FishingOperation; @@ -49,6 +47,7 @@ import org.junit.runner.Description; import org.nuiton.config.ApplicationConfig; import org.nuiton.i18n.I18n; +import org.nuiton.jaxx.application.ApplicationIOUtil; import java.io.File; import java.io.IOException; @@ -117,9 +116,10 @@ } } - protected TuttiServiceContext createServiceContext(RessourceClassLoader loader, - TuttiConfiguration config) { - return new TuttiServiceContext(loader, config) { + // protected TuttiServiceContext createServiceContext(RessourceClassLoader loader, + protected TuttiServiceContext createServiceContext(TuttiConfiguration config) { +// return new TuttiServiceContext(loader, config) { + return new TuttiServiceContext(config) { Map<Class<?>, Integer> counts = Maps.newHashMap(); @@ -139,11 +139,11 @@ @Override public void prepareConfig(ApplicationConfig applicationConfig, File resourceDirectory) { - applicationConfig.loadDefaultOptions( - TuttiConfigurationOption.values()); + TuttiConfiguration.getDefaultApplicationConfig(applicationConfig); + applicationConfig.setDefaultOption( - "tutti.basedir", + TuttiConfigurationOption.BASEDIR.getKey(), resourceDirectory.getAbsolutePath()); } @@ -204,7 +204,8 @@ protected void before(Description description) throws Throwable { super.before(description); - serviceContext = createServiceContext(loader, getConfig()); +// serviceContext = createServiceContext(loader, getConfig()); + serviceContext = createServiceContext(getConfig()); I18n.init(null, Locale.FRANCE); serviceContext.getConfig().setCsvSeparator(';'); Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/ValidationServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/ValidationServiceTest.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/ValidationServiceTest.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -26,7 +26,6 @@ import com.google.common.collect.Lists; import fr.ifremer.tutti.TuttiConfiguration; -import fr.ifremer.tutti.persistence.RessourceClassLoader; import fr.ifremer.tutti.persistence.entities.data.Cruise; import fr.ifremer.tutti.persistence.entities.data.Cruises; import fr.ifremer.tutti.persistence.entities.data.Program; @@ -59,11 +58,16 @@ private TuttiDataContextFake dataContext; @Override - protected TuttiServiceContext createServiceContext(RessourceClassLoader loader, - TuttiConfiguration config) { - return new TuttiServiceContext(loader, config, dataContext = new TuttiDataContextFake()); + protected TuttiServiceContext createServiceContext(TuttiConfiguration config) { + return new TuttiServiceContext(config, dataContext = new TuttiDataContextFake()); } +// @Override +// protected TuttiServiceContext createServiceContext(RessourceClassLoader loader, +// TuttiConfiguration config) { +// return new TuttiServiceContext(loader, config, dataContext = new TuttiDataContextFake()); +// } + @Before public void setUp() throws Exception { Modified: trunk/tutti-ui-swing/pom.xml =================================================================== --- trunk/tutti-ui-swing/pom.xml 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-ui-swing/pom.xml 2014-04-21 13:27:20 UTC (rev 1718) @@ -207,6 +207,33 @@ <artifactId>swingx-autocomplete</artifactId> </dependency> +  + <dependency> + <groupId>org.springframework</groupId> + <artifactId>spring-core</artifactId> + <scope>runtime</scope> + </dependency> + <dependency> + <groupId>org.springframework</groupId> + <artifactId>spring-beans</artifactId> + <scope>runtime</scope> + </dependency> + <dependency> + <groupId>org.springframework</groupId> + <artifactId>spring-context</artifactId> + <scope>runtime</scope> + </dependency> + <dependency> + <groupId>org.springframework</groupId> + <artifactId>spring-jdbc</artifactId> + <scope>runtime</scope> + </dependency> + <dependency> + <groupId>org.springframework</groupId> + <artifactId>spring-tx</artifactId> + <scope>runtime</scope> + </dependency> +  <dependency> <groupId>org.slf4j</groupId> @@ -263,6 +290,15 @@ </goals> </execution> </executions> +  + <dependencies> + <dependency> + <groupId>org.springframework</groupId> + <artifactId>spring-context</artifactId> + <version>${springVersion}</version> + <scope>runtime</scope> + </dependency> + </dependencies> </plugin> <plugin> Modified: trunk/tutti-ui-swing/src/license/THIRD-PARTY.properties =================================================================== --- trunk/tutti-ui-swing/src/license/THIRD-PARTY.properties 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-ui-swing/src/license/THIRD-PARTY.properties 2014-04-21 13:27:20 UTC (rev 1718) @@ -1,15 +1,24 @@ # Generated by org.codehaus.mojo.license.AddThirdPartyMojo #------------------------------------------------------------------------------- # Already used licenses in project : +# - AL 2.0 # - Affero General Public License (AGPL) # - Apache License +# - Apache License 2.0 +# - Apache License Version 2.0 +# - Apache License, version 2.0 # - BSD License # - BSD-style license +# - Common Development and Distribution License # - Common Development and Distribution License (CDDL) v1.0 # - Common Public License Version 1.0 +# - Eclipse Distribution License (EDL), Version 1.0 +# - Eclipse Public License (EPL), Version 1.0 # - Eclipse Public License - v 1.0 # - GNU Affero General Public License v3 +# - GNU General Public License (GPL) # - GNU General Public License - Version 2 with the class path exception +# - GNU General Public License, Version 2 with the Classpath Exception # - GNU Lesser General Public License (LGPL), version 2.1 # - GNU Library or Lesser General Public License # - General Public License (GPL) @@ -25,13 +34,12 @@ # - New BSD License # - Public Domain # - The Apache Software License, Version 2.0 -# - license.txt +# - WTFPL #------------------------------------------------------------------------------- # Please fill the missing licenses for dependencies : # # -#Wed Jan 15 09:38:43 CET 2014 -antlr--antlr--2.7.6=BSD License +#Mon Apr 21 10:43:33 CEST 2014 batik--batik-awt-util--1.6=The Apache Software License, Version 2.0 batik--batik-bridge--1.6=The Apache Software License, Version 2.0 batik--batik-css--1.6=The Apache Software License, Version 2.0 @@ -47,4 +55,4 @@ batik--batik-xml--1.6=The Apache Software License, Version 2.0 commons-primitives--commons-primitives--1.0=The Apache Software License, Version 2.0 dom4j--dom4j--1.6.1=BSD License -javax.transaction--jta--1.1=Common Development and Distribution License (CDDL) v1.0 +javassist--javassist--3.11.0.GA=The Apache Software License, Version 2.0 Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiApplicationUpdaterCallBack.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiApplicationUpdaterCallBack.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiApplicationUpdaterCallBack.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -27,15 +27,15 @@ import com.google.common.base.Preconditions; import com.google.common.collect.Lists; import com.google.common.collect.Maps; -import org.nuiton.jaxx.application.ApplicationIOUtil; -import org.nuiton.jaxx.application.ApplicationTechnicalException; -import org.nuiton.jaxx.application.swing.action.ApplicationActionException; import fr.ifremer.tutti.LabelAware; import fr.ifremer.tutti.TuttiConfiguration; import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.ui.swing.action.AbstractTuttiAction; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; +import org.nuiton.jaxx.application.ApplicationIOUtil; +import org.nuiton.jaxx.application.ApplicationTechnicalException; +import org.nuiton.jaxx.application.swing.action.ApplicationActionException; import org.nuiton.updater.ApplicationInfo; import org.nuiton.updater.ApplicationUpdaterCallback; @@ -43,8 +43,8 @@ import java.util.List; import java.util.Map; -import static org.nuiton.i18n.I18n.t; import static org.nuiton.i18n.I18n.n; +import static org.nuiton.i18n.I18n.t; /** * CallBack to update jre, application, i18n. @@ -203,20 +203,6 @@ TuttiConfiguration config = context.getConfig(); - // must remove the enumeration file at exit - File enumerationPath = config.getDbEnumerationPath(); - ApplicationIOUtil.forceDeleteOnExit( - enumerationPath, - t("tutti.applicationUpdater.updateDone.deleteDirectory.enum.error", enumerationPath) - ); - - // must remove the db conf file at exit - File dbConfPath = config.getDbConfigurationPath(); - ApplicationIOUtil.forceDeleteOnExit( - dbConfPath, - t("tutti.applicationUpdater.updateDone.deleteDirectory.dbConf.error", dbConfPath) - ); - //FIXME-check this is necessary: i18n is no more generated ? // must also remove i18n directory File i18nDirectory = context.getConfig().getI18nDirectory(); Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiDbUpdaterCallBack.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiDbUpdaterCallBack.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiDbUpdaterCallBack.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -26,10 +26,8 @@ import com.google.common.base.Preconditions; import com.google.common.collect.Maps; +import fr.ifremer.adagio.core.service.technical.synchro.ReferentialSynchroContext; import fr.ifremer.adagio.core.service.technical.synchro.ReferentialSynchroResult; -import org.nuiton.jaxx.application.ApplicationTechnicalException; -import org.nuiton.jaxx.application.swing.action.ApplicationActionException; -import org.nuiton.jaxx.application.swing.action.ApplicationActionUI; import fr.ifremer.tutti.TuttiConfiguration; import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; @@ -40,16 +38,22 @@ import org.apache.commons.io.FileUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; +import org.nuiton.jaxx.application.ApplicationTechnicalException; +import org.nuiton.jaxx.application.swing.action.ApplicationActionException; +import org.nuiton.jaxx.application.swing.action.ApplicationActionUI; +import org.nuiton.jaxx.application.type.ApplicationProgressionModel; import org.nuiton.updater.ApplicationInfo; import org.nuiton.updater.ApplicationUpdater; import org.nuiton.updater.ApplicationUpdaterCallback; +import java.beans.PropertyChangeEvent; +import java.beans.PropertyChangeListener; import java.io.File; import java.io.IOException; import java.util.Map; +import static org.nuiton.i18n.I18n.n; import static org.nuiton.i18n.I18n.t; -import static org.nuiton.i18n.I18n.n; /** * CallBack to update db. @@ -166,12 +170,12 @@ info.oldVersion, info.newVersion)); } - // before install or update, regenerate db configuration files +// // before install or update, regenerate db configuration files +// +// TuttiConfiguration configuration = regenerateDbConf(); +// +// configuration.generateExternalDbFiles(true); - TuttiConfiguration configuration = regenerateDbConf(); - - configuration.generateExternalDbFiles(true); - if (dbInstalled) { // first database, just copy it to correct directory @@ -237,18 +241,21 @@ log.info(String.format("A database update was downloaded (oldVersion: %s, newVersion: %s), will launch a referential synchronize operation ", info.oldVersion, info.newVersion)); } TuttiReferentialSynchronizeService service = context.getTuttiReferentialSynchronizeService(); - ReferentialSynchroResult result = new ReferentialSynchroResult(); + File dbDirectory = getDbDirectory(info); + ReferentialSynchroContext synchroContext = service.createSynchroContext(dbDirectory); + ReferentialSynchroResult result = synchroContext.getResult(); + ApplicationActionUI actionUI = context.getActionUI(); - actionUI.getModel().setProgressionModel(result.getProgressionModel()); - service.prepare(dbDirectory, result); + actionUI.getModel().setProgressionModel(new DelegateProgressionModel(result.getProgressionModel())); + service.prepare(synchroContext); if (!result.isSuccess()) { throw new ApplicationTechnicalException(t("tutti.applicationUpdater.synchroDB.prepare.error"), result.getError()); } - service.synchronize(dbDirectory, result); + service.synchronize(synchroContext); if (!result.isSuccess()) { throw new ApplicationTechnicalException(t("tutti.applicationUpdater.synchroDB.synchro.error"), result.getError()); @@ -283,4 +290,78 @@ t("tutti.applicationUpdater.synchroDB.writeVersion.error", versionFile)); } } + + private static class DelegateProgressionModel extends ApplicationProgressionModel { + + private static final long serialVersionUID = 1L; + + private final fr.ifremer.adagio.core.type.ProgressionModel progressionModel; + + public DelegateProgressionModel(fr.ifremer.adagio.core.type.ProgressionModel progressionModel) { + + this.progressionModel = progressionModel; + this.progressionModel.addPropertyChangeListener(new PropertyChangeListener() { + @Override + public void propertyChange(PropertyChangeEvent evt) { + firePropertyChange(evt.getPropertyName(), evt.getOldValue(), evt.getNewValue()); + } + }); + } + + @Override + public void setMessage(String message) { + progressionModel.setMessage(message); + } + + @Override + public void increments(String message) { + progressionModel.increments(message); + } + + @Override + public String getMessage() { + return progressionModel.getMessage(); + } + + @Override + public void setRate(float rate) { + progressionModel.setRate(rate); + } + + @Override + public float getRate() { + return progressionModel.getRate(); + } + + @Override + public void increments(int nb) { + progressionModel.increments(nb); + } + + @Override + public void setCurrent(int current) { + progressionModel.setCurrent(current); + } + + @Override + public int getCurrent() { + return progressionModel.getCurrent(); + } + + @Override + public void adaptTotal(int total) { + progressionModel.adaptTotal(total); + } + + @Override + public void setTotal(int total) { + progressionModel.setTotal(total); + } + + @Override + public int getTotal() { + return progressionModel.getTotal(); + } + } + } Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/TuttiUIContext.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -29,7 +29,6 @@ import com.google.common.collect.Sets; import fr.ifremer.tutti.TuttiConfiguration; import fr.ifremer.tutti.ichtyometer.feed.FeedReader; -import fr.ifremer.tutti.persistence.RessourceClassLoader; import fr.ifremer.tutti.service.ClosedPersistenceService; import fr.ifremer.tutti.service.DecoratorService; import fr.ifremer.tutti.service.PersistenceService; @@ -165,13 +164,6 @@ protected final TuttiConfiguration config; /** - * ClassLoader ressource. - * - * @since 0.3 - */ - protected final RessourceClassLoader resourceLoader; - - /** * Service context used by any service. * * @since 0.1 @@ -330,8 +322,7 @@ protected TuttiUIContext(TuttiConfiguration config) { this.config = config; - this.resourceLoader = new RessourceClassLoader(Thread.currentThread().getContextClassLoader()); - this.serviceContext = new TuttiServiceContext(resourceLoader, config); + this.serviceContext = new TuttiServiceContext(config); Map<Class, State> additionalStates = Maps.newHashMap(); additionalStates.put(BeanFilterableComboBox.class, new BeanFilterableComboBoxState()); @@ -405,9 +396,6 @@ config.prepareDirectories(); - // use our special classLoader (which will read some files from resources from a configuration directory) - Thread.currentThread().setContextClassLoader(getResourceLoader()); - // converters are stored in current classloader, we need then to rescan them // each time we change current classloader ConverterUtil.deregister(); @@ -428,7 +416,7 @@ // init db configuration //--------------------------------------------------------------------// - config.initConfig(getResourceLoader()); + config.initConfig(); // // clean db cache (avoid a lots of headache :( // File cacheDirectory = config.getServiceConfig().getPersistenceConfig().getCacheDirectory(); @@ -469,7 +457,7 @@ i18nLocale, i18nDirectory)); } I18n.init(new UserI18nInitializer( - i18nDirectory, new DefaultI18nInitializer("tutti-i18n")), + i18nDirectory, new DefaultI18nInitializer("tutti-i18n")), i18nLocale); @@ -950,10 +938,6 @@ } } - public RessourceClassLoader getResourceLoader() { - return resourceLoader; - } - //------------------------------------------------------------------------// //-- Help methods --// //------------------------------------------------------------------------// Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/config/TuttiConfigUIHandler.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/config/TuttiConfigUIHandler.java 2014-04-21 05:40:03 UTC (rev 1717) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/config/TuttiConfigUIHandler.java 2014-04-21 13:27:20 UTC (rev 1718) @@ -241,12 +241,12 @@ .addOption(TuttiConfigurationOption.DB_CACHE_DIRECTORY) .setOptionShortLabel(t("tutti.config.option.persistence.db.cache.directory.shortLabel")) - .addOption(TuttiConfigurationOption.DB_CONFIGURATION_PATH) - .setOptionShortLabel(t("tutti.config.option.persistence.db.configurationPath.shortLabel")) +// .addOption(TuttiConfigurationOption.DB_CONFIGURATION_PATH) +// .setOptionShortLabel(t("tutti.config.option.persistence.db.configurationPath.shortLabel")) +// +// .addOption(TuttiConfigurationOption.DB_ENUMERATION_PATH) +// .setOptionShortLabel(t("tutti.config.option.persistence.db.enumerationPath.shortLabel")) - .addOption(TuttiConfigurationOption.DB_ENUMERATION_PATH) - .setOptionShortLabel(t("tutti.config.option.persistence.db.enumerationPath.shortLabel")) - .addOption(TuttiConfigurationOption.JDBC_URL) .setOptionShortLabel(t("tutti.config.option.persistence.jdbc.url.shortLabel"))

1 0

r1717 - in trunk: tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/sanity tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/synchro tutti-persistence/src/main/java/fr/ifremer/tutti/persistence tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/referential tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service tutti-persistence/src/main/java/fr/
by tchemit＠users.forge.codelutin.com 21 Apr '14

21 Apr '14

Author: tchemit Date: 2014-04-21 07:40:03 +0200 (Mon, 21 Apr 2014) New Revision: 1717 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1717 Log: refs #4959 : refactor batch model + improve tuttipersistence design Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/referential/CaracteristicQualitativeValues.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchTreeHelper.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/sanity/DatabaseSanityServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/synchro/ReferentialSynchroServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AccidentalBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/IndividualObservationBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/MarineLitterBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/MeasurementPersistenceHelper.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProgramPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SamplePersistenceHelper.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/ScientificCruiseCatchBatchValidator.java trunk/tutti-persistence/src/main/xmi/tutti-persistence.zargo trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceReadTest.java trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceWriteTest.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportRow.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/UpdateSchemaTest.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportService2Test.java trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportServiceTest.java trunk/tutti-ui-swing/src/main/filtered-resources/log4j.properties Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/sanity/DatabaseSanityServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/sanity/DatabaseSanityServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/sanity/DatabaseSanityServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -29,7 +29,6 @@ import fr.ifremer.adagio.core.service.technical.sanity.task.DatabaseSanityTask; import org.hibernate.SessionFactory; import org.hibernate.classic.Session; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Service; import javax.annotation.Resource; @@ -50,7 +49,7 @@ /** * Session factory. */ - @Autowired + @Resource protected SessionFactory sessionFactory; /** Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/synchro/ReferentialSynchroServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/synchro/ReferentialSynchroServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/adagio/core/service/technical/synchro/ReferentialSynchroServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -38,12 +38,12 @@ import org.hibernate.engine.SessionFactoryImplementor; import org.hibernate.tool.hbm2ddl.ColumnMetadata; import org.nuiton.util.TimeLog; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.jdbc.datasource.DriverManagerDataSource; import org.springframework.jdbc.support.JdbcUtils; import org.springframework.stereotype.Service; +import javax.annotation.Resource; import java.sql.Connection; import java.sql.DriverManager; import java.sql.PreparedStatement; @@ -76,10 +76,10 @@ private static final TimeLog TIME = new TimeLog(ReferentialSynchroServiceImpl.class); - @Autowired + @Resource protected DriverManagerDataSource dataSource; - @Autowired + @Resource protected SessionFactory sessionFactory; protected Dialect localDialect; Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistence.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -24,43 +24,21 @@ * #L% */ -import com.google.common.base.Predicate; -import com.google.common.collect.Multimap; -import fr.ifremer.tutti.persistence.entities.CaracteristicMap; -import fr.ifremer.tutti.persistence.entities.data.AccidentalBatch; -import fr.ifremer.tutti.persistence.entities.data.AttachementObjectTypeEnum; -import fr.ifremer.tutti.persistence.entities.data.Attachment; -import fr.ifremer.tutti.persistence.entities.data.BatchContainer; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatch; -import fr.ifremer.tutti.persistence.entities.data.BenthosBatchFrequency; -import fr.ifremer.tutti.persistence.entities.data.CatchBatch; -import fr.ifremer.tutti.persistence.entities.data.Cruise; -import fr.ifremer.tutti.persistence.entities.data.FishingOperation; -import fr.ifremer.tutti.persistence.entities.data.IndividualObservationBatch; -import fr.ifremer.tutti.persistence.entities.data.MarineLitterBatch; -import fr.ifremer.tutti.persistence.entities.data.Program; -import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; -import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; -import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; -import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; -import fr.ifremer.tutti.persistence.entities.referential.Gear; -import fr.ifremer.tutti.persistence.entities.referential.ObjectType; -import fr.ifremer.tutti.persistence.entities.referential.Person; -import fr.ifremer.tutti.persistence.entities.referential.Species; -import fr.ifremer.tutti.persistence.entities.referential.TuttiLocation; -import fr.ifremer.tutti.persistence.entities.referential.TuttiReferentialEntity; -import fr.ifremer.tutti.persistence.entities.referential.Vessel; -import fr.ifremer.tutti.persistence.service.TuttiEnumerationFile; -import org.nuiton.util.Version; +import fr.ifremer.tutti.persistence.service.AccidentalBatchPersistenceService; +import fr.ifremer.tutti.persistence.service.AttachmentPersistenceService; +import fr.ifremer.tutti.persistence.service.BenthosBatchPersistenceService; +import fr.ifremer.tutti.persistence.service.CatchBatchPersistenceService; +import fr.ifremer.tutti.persistence.service.CruisePersistenceService; +import fr.ifremer.tutti.persistence.service.FishingOperationPersistenceService; +import fr.ifremer.tutti.persistence.service.IndividualObservationBatchPersistenceService; +import fr.ifremer.tutti.persistence.service.MarineLitterBatchPersistenceService; +import fr.ifremer.tutti.persistence.service.ProgramPersistenceService; +import fr.ifremer.tutti.persistence.service.ProtocolPersistenceService; +import fr.ifremer.tutti.persistence.service.ReferentialPersistenceService; +import fr.ifremer.tutti.persistence.service.SpeciesBatchPersistenceService; +import fr.ifremer.tutti.persistence.service.TechnicalPersistenceService; import org.springframework.transaction.annotation.Transactional; -import java.io.File; -import java.util.Collection; -import java.util.List; -import java.util.concurrent.Callable; - /** * Contract for a persistence driver used by Tutti. * @@ -68,7 +46,20 @@ * @since 0.1 */ @Transactional(readOnly = true) -public interface TuttiPersistence extends TuttiPersistenceServiceImplementor { +public interface TuttiPersistence extends TuttiPersistenceServiceImplementor, + TechnicalPersistenceService, + BenthosBatchPersistenceService, + SpeciesBatchPersistenceService, + ReferentialPersistenceService, + CatchBatchPersistenceService, + AttachmentPersistenceService, + ProgramPersistenceService, + CruisePersistenceService, + ProtocolPersistenceService, + FishingOperationPersistenceService, + MarineLitterBatchPersistenceService, + AccidentalBatchPersistenceService, + IndividualObservationBatchPersistenceService { //------------------------------------------------------------------------// //-- Technical methods --// @@ -76,658 +67,658 @@ String getImplementationName(); - /** - * To clear all caches. - * - * @since 1.0.1 - */ - void clearAllCaches(); +// /** +// * To clear all caches. +// * +// * @since 1.0.1 +// */ +// void clearAllCaches(); +// +//// /** +//// * @return the enumeration file (where all constant mapping are defined). +//// * @since 2.4 +//// */ +//// TuttiEnumerationFile getEnumerationFile(); +// +// /** +// * To invoke the given call code. +// * +// * Note: this is mainly to execute a code in a single +// * transaction. +// * +// * @param call call to invoke +// * @param <V> return type +// * @return the return of the call +// * @since 2.4 +// */ +// @Transactional(readOnly = false) +// <V> V invoke(Callable<V> call); +// +// Version getDbVersion(); +// +// Version getApplicationVersion(); +// +// void updateSchema(); +// +// void sanityDb(); - /** - * @return the enumeration file (where all constant mapping are defined). - * @since 2.4 - */ - TuttiEnumerationFile getEnumerationFile(); +// //------------------------------------------------------------------------// +// //-- Referential methods --// +// //------------------------------------------------------------------------// +// +// /** +// * @return all available zones (used by a {@link Program}. +// * @see Program#getZone() +// * @see Program#setZone(TuttiLocation) +// * @since 0.3 +// */ +// List<TuttiLocation> getAllProgramZone(); +// +// /** +// * @return all countries. +// * @since 0.1 +// */ +// List<TuttiLocation> getAllCountry(); +// +// /** +// * @return all harbours (used by a {@link Cruise}). +// * @see {@link Cruise#getDepartureLocation()} +// * @see {@link Cruise#setDepartureLocation(TuttiLocation)} +// * @see {@link Cruise#getReturnLocation()} +// * @see {@link Cruise#setReturnLocation(TuttiLocation)} +// * @since 1.2 +// */ +// +// List<TuttiLocation> getAllHarbour(); +// +// /** +// * Get the list of location of type strata that match the given zone id. +// * +// * @param zoneId id of the parent zone (can not be null) +// * @return the stratas with given zone id as location parent +// * @since 1.0 +// */ +// List<TuttiLocation> getAllFishingOperationStrata(String zoneId); +// +// /** +// * Get the list of location of type substra that match the given zone id or +// * if not null the given strata id. +// * +// * @param zoneId id of the parent zone (can not be null) +// * @param strataId id of the optional parent strata +// * @return the list of localite with given zone id as location parent / or strata +// * @since 1.0 +// */ +// List<TuttiLocation> getAllFishingOperationSubStrata(String zoneId, String strataId); +// +// /** +// * Get the list of location of type substra that match the given zone id or +// * if not null the given strata id or if not null the given substrata id if +// * not null. +// * +// * @param zoneId id of the parent zone (can not be null) +// * @param strataId id of the optional parent strata +// * @param subStrataId id of the optional parent subStrata +// * @return the list of localite with given zone id as location parent / or strata or substrata +// * @since 1.0 +// */ +// List<TuttiLocation> getAllFishingOperationLocation(String zoneId, String strataId, String subStrataId); +// +// /** +// * @return all scientific vessels (used by a {@link Cruise}). +// * @see Cruise#getVessel() +// * @see Cruise#setVessel(Vessel) +// * @since 0.3 +// */ +// List<Vessel> getAllScientificVessel(); +// +// /** +// * @return all commercial vessels (used by a {@link Cruise}). +// * @see Cruise#getVessel() +// * @see Cruise#setVessel(Vessel) +// * @since 0.3 +// */ +// List<Vessel> getAllFishingVessel(); +// +// /** +// * Get all species (referent or synonym) with with {@link Species#getSurveyCode()} +// * filled by optional protocol. +// * +// * @return all species with {@code surveyCode} filled if possible. +// * @since 0.1 +// */ +// List<Species> getAllSpecies(); +// +// /** +// * Get all {@code referent} species with {@link Species#getSurveyCode()} +// * filled by optional protocol. +// * +// * @return all species with {@code surveyCode} filled if possible. +// * @since 1.0 +// */ +// List<Species> getAllReferentSpecies(); +// +// /** +// * Obtain a species with external code as vernacular code given his referenceTaxonId. +// * +// * Note: {@link Species#getRefTaxCode()} will not be +// * filled by with method. +// * +// * @param referenceTaxonId id of the reference taxon of the species to load +// * @return the species or {@code null} if not found. +// * @see Species#getReferenceTaxonId() +// * @see Species#getVernacularCode() +// * @since 2.0 +// */ +// Species getSpeciesByReferenceTaxonIdWithVernacularCode(Integer referenceTaxonId); +// +// /** +// * @return all caracteristics of the system. +// * @since 1.0 +// */ +// List<Caracteristic> getAllCaracteristic(); +// +// /** +// * @return all caracteristics of the system with the ones which are protected. +// * @since 2.3 +// */ +// List<Caracteristic> getAllCaracteristicWithProtected(); +// +// /** +// * @return all caracteristics of the system useable for {@link SampleCategoryModel}. +// * @since 2.4 +// */ +// List<Caracteristic> getAllCaracteristicForSampleCategory(); +// +// /** +// * @return all numeric caracteristics of the system. +// * @since 1.0.2 +// */ +// List<Caracteristic> getAllNumericCaracteristic(); +// +// Caracteristic getSizeCategoryCaracteristic(); +// +// Caracteristic getSexCaracteristic(); +// +// Caracteristic getSortedUnsortedCaracteristic(); +// +// Caracteristic getMaturityCaracteristic(); +// +// Caracteristic getAgeCaracteristic(); +// +// Caracteristic getMarineLitterCategoryCaracteristic(); +// +// Caracteristic getMarineLitterSizeCategoryCaracteristic(); +// +// Caracteristic getVerticalOpeningCaracteristic(); +// +// Caracteristic getHorizontalOpeningWingCaracteristic(); +// +// Caracteristic getHorizontalOpeningDoorCaracteristic(); +// +// Caracteristic getDeadOrAliveCaracteristic(); +// +// Caracteristic getPmfmIdCaracteristic(); +// +// Caracteristic getWeightMeasuredCaracteristic(); +// +// Caracteristic getCaracteristic(Integer pmfmId); +// +// Predicate<SpeciesAbleBatch> getVracBatchPredicate(); +// +// boolean isVracBatch(SpeciesAbleBatch speciesBatch); +// +// boolean isTemporary(TuttiReferentialEntity entity); +// +// List<Gear> getAllScientificGear(); +// +// List<Gear> getAllFishingGear(); +// +// List<Person> getAllPerson(); +// +// /** +// * @return all object type +// * @since 1.0.2 +// */ +// List<ObjectType> getAllObjectType(); +// +// Person getPerson(Integer personId); +// +// Gear getGear(Integer gearCode); +// +// Vessel getVessel(String vesselCode); +// +// ObjectType getObjectType(String objectTypeCode); +// +// /** +// * Import given temporary species. +// * +// * @param species species to import +// * @since 1.0 +// */ +// @Transactional(readOnly = false) +// List<Species> importTemporarySpecies(List<Species> species); +// +// /** +// * Import given temporary vessels. +// * +// * @param vessels vessels to import +// * @since 1.0 +// */ +// @Transactional(readOnly = false) +// List<Vessel> importTemporaryVessel(List<Vessel> vessels); +// +// /** +// * Import given temporary persons. +// * +// * @param persons persons to import +// * @since 1.0 +// */ +// @Transactional(readOnly = false) +// List<Person> importTemporaryPerson(List<Person> persons); +// +// /** +// * Import given temporary gears. +// * +// * @param gears gears to import +// * @since 1.0 +// */ +// @Transactional(readOnly = false) +// List<Gear> importTemporaryGear(List<Gear> gears); - /** - * To invoke the given call code. - * - * Note: this is mainly to execute a code in a single - * transaction. - * - * @param call call to invoke - * @param <V> return type - * @return the return of the call - * @since 2.4 - */ - @Transactional(readOnly = false) - <V> V invoke(Callable<V> call); - - Version getDbVersion(); - - Version getApplicationVersion(); - - void updateSchema(); - - void sanityDb(); - //------------------------------------------------------------------------// - //-- Referential methods --// - //------------------------------------------------------------------------// - - /** - * @return all available zones (used by a {@link Program}. - * @see Program#getZone() - * @see Program#setZone(TuttiLocation) - * @since 0.3 - */ - List<TuttiLocation> getAllProgramZone(); - - /** - * @return all countries. - * @since 0.1 - */ - List<TuttiLocation> getAllCountry(); - - /** - * @return all harbours (used by a {@link Cruise}). - * @see {@link Cruise#getDepartureLocation()} - * @see {@link Cruise#setDepartureLocation(TuttiLocation)} - * @see {@link Cruise#getReturnLocation()} - * @see {@link Cruise#setReturnLocation(TuttiLocation)} - * @since 1.2 - */ - - List<TuttiLocation> getAllHarbour(); - - /** - * Get the list of location of type strata that match the given zone id. - * - * @param zoneId id of the parent zone (can not be null) - * @return the stratas with given zone id as location parent - * @since 1.0 - */ - List<TuttiLocation> getAllFishingOperationStrata(String zoneId); - - /** - * Get the list of location of type substra that match the given zone id or - * if not null the given strata id. - * - * @param zoneId id of the parent zone (can not be null) - * @param strataId id of the optional parent strata - * @return the list of localite with given zone id as location parent / or strata - * @since 1.0 - */ - List<TuttiLocation> getAllFishingOperationSubStrata(String zoneId, String strataId); - - /** - * Get the list of location of type substra that match the given zone id or - * if not null the given strata id or if not null the given substrata id if - * not null. - * - * @param zoneId id of the parent zone (can not be null) - * @param strataId id of the optional parent strata - * @param subStrataId id of the optional parent subStrata - * @return the list of localite with given zone id as location parent / or strata or substrata - * @since 1.0 - */ - List<TuttiLocation> getAllFishingOperationLocation(String zoneId, String strataId, String subStrataId); - - /** - * @return all scientific vessels (used by a {@link Cruise}). - * @see Cruise#getVessel() - * @see Cruise#setVessel(Vessel) - * @since 0.3 - */ - List<Vessel> getAllScientificVessel(); - - /** - * @return all commercial vessels (used by a {@link Cruise}). - * @see Cruise#getVessel() - * @see Cruise#setVessel(Vessel) - * @since 0.3 - */ - List<Vessel> getAllFishingVessel(); - - /** - * Get all species (referent or synonym) with with {@link Species#getSurveyCode()} - * filled by optional protocol. - * - * @return all species with {@code surveyCode} filled if possible. - * @since 0.1 - */ - List<Species> getAllSpecies(); - - /** - * Get all {@code referent} species with {@link Species#getSurveyCode()} - * filled by optional protocol. - * - * @return all species with {@code surveyCode} filled if possible. - * @since 1.0 - */ - List<Species> getAllReferentSpecies(); - - /** - * Obtain a species with external code as vernacular code given his referenceTaxonId. - * - * Note: {@link Species#getRefTaxCode()} will not be - * filled by with method. - * - * @param referenceTaxonId id of the reference taxon of the species to load - * @return the species or {@code null} if not found. - * @see Species#getReferenceTaxonId() - * @see Species#getVernacularCode() - * @since 2.0 - */ - Species getSpeciesByReferenceTaxonIdWithVernacularCode(Integer referenceTaxonId); - - /** - * @return all caracteristics of the system. - * @since 1.0 - */ - List<Caracteristic> getAllCaracteristic(); - - /** - * @return all caracteristics of the system with the ones which are protected. - * @since 2.3 - */ - List<Caracteristic> getAllCaracteristicWithProtected(); - - /** - * @return all caracteristics of the system useable for {@link SampleCategoryModel}. - * @since 2.4 - */ - List<Caracteristic> getAllCaracteristicForSampleCategory(); - - /** - * @return all numeric caracteristics of the system. - * @since 1.0.2 - */ - List<Caracteristic> getAllNumericCaracteristic(); - - Caracteristic getSizeCategoryCaracteristic(); - - Caracteristic getSexCaracteristic(); - - Caracteristic getSortedUnsortedCaracteristic(); - - Caracteristic getMaturityCaracteristic(); - - Caracteristic getAgeCaracteristic(); - - Caracteristic getMarineLitterCategoryCaracteristic(); - - Caracteristic getMarineLitterSizeCategoryCaracteristic(); - - Caracteristic getVerticalOpeningCaracteristic(); - - Caracteristic getHorizontalOpeningWingCaracteristic(); - - Caracteristic getHorizontalOpeningDoorCaracteristic(); - - Caracteristic getDeadOrAliveCaracteristic(); - - Caracteristic getPmfmIdCaracteristic(); - - Caracteristic getWeightMeasuredCaracteristic(); - - Caracteristic getCaracteristic(Integer pmfmId); - - Predicate<SpeciesAbleBatch> getVracBatchPredicate(); - - boolean isVracBatch(SpeciesAbleBatch speciesBatch); - - boolean isTemporary(TuttiReferentialEntity entity); - - List<Gear> getAllScientificGear(); - - List<Gear> getAllFishingGear(); - - List<Person> getAllPerson(); - - /** - * @return all object type - * @since 1.0.2 - */ - List<ObjectType> getAllObjectType(); - - Person getPerson(Integer personId); - - Gear getGear(Integer gearCode); - - Vessel getVessel(String vesselCode); - - ObjectType getObjectType(String objectTypeCode); - - /** - * Import given temporary species. - * - * @param species species to import - * @since 1.0 - */ - @Transactional(readOnly = false) - List<Species> importTemporarySpecies(List<Species> species); - - /** - * Import given temporary vessels. - * - * @param vessels vessels to import - * @since 1.0 - */ - @Transactional(readOnly = false) - List<Vessel> importTemporaryVessel(List<Vessel> vessels); - - /** - * Import given temporary persons. - * - * @param persons persons to import - * @since 1.0 - */ - @Transactional(readOnly = false) - List<Person> importTemporaryPerson(List<Person> persons); - - /** - * Import given temporary gears. - * - * @param gears gears to import - * @since 1.0 - */ - @Transactional(readOnly = false) - List<Gear> importTemporaryGear(List<Gear> gears); - - //------------------------------------------------------------------------// //-- Attachments methods --// //------------------------------------------------------------------------// - /** - * Get all attachments for the given object {@code objectId} of type. - * - * @param objectType type of attachment (see {@link AttachementObjectTypeEnum}) - * @param objectId id of the object - * @return list of all attachments for the given {@code objectId}. - * @see AttachementObjectTypeEnum - */ - List<Attachment> getAllAttachments(AttachementObjectTypeEnum objectType, - Integer objectId); +// /** +// * Get all attachments for the given object {@code objectId} of type. +// * +// * @param objectType type of attachment (see {@link AttachementObjectTypeEnum}) +// * @param objectId id of the object +// * @return list of all attachments for the given {@code objectId}. +// * @see AttachementObjectTypeEnum +// */ +// List<Attachment> getAllAttachments(AttachementObjectTypeEnum objectType, +// Integer objectId); +// +// /** +// * Get the file of the given {@code attachmentId}. +// * +// * @param attachmentId id of the attachment +// * @return the file for the given attachment +// */ +// File getAttachmentFile(String attachmentId); +// +// /** +// * Creates the given attachment. +// * +// * @param attachment attachment to create +// * @param file file to store in this attachment +// * @return the attachment with his id. +// */ +// @Transactional(readOnly = false) +// Attachment createAttachment(Attachment attachment, File file); +// +// /** +// * Saves the given attachment. +// * +// * @param attachment attachment to create +// * @return the attachment with his id. +// */ +// @Transactional(readOnly = false) +// Attachment saveAttachment(Attachment attachment); +// +// /** +// * Deletes the given attachment given his id. +// * +// * @param attachmentId id of the attachment to delete +// */ +// @Transactional(readOnly = false) +// void deleteAttachment(String attachmentId); - /** - * Get the file of the given {@code attachmentId}. - * - * @param attachmentId id of the attachment - * @return the file for the given attachment - */ - File getAttachmentFile(String attachmentId); - - /** - * Creates the given attachment. - * - * @param attachment attachment to create - * @param file file to store in this attachment - * @return the attachment with his id. - */ - @Transactional(readOnly = false) - Attachment createAttachment(Attachment attachment, File file); - - /** - * Saves the given attachment. - * - * @param attachment attachment to create - * @return the attachment with his id. - */ - @Transactional(readOnly = false) - Attachment saveAttachment(Attachment attachment); - - /** - * Deletes the given attachment given his id. - * - * @param attachmentId id of the attachment to delete - */ - @Transactional(readOnly = false) - void deleteAttachment(String attachmentId); - //------------------------------------------------------------------------// //-- Program methods --// //------------------------------------------------------------------------// - /** - * Get all programs. - * - * Note: For each program, his zone is loaded. - * - * @return the list of programs found in db. - */ - List<Program> getAllProgram(); +// /** +// * Get all programs. +// * +// * Note: For each program, his zone is loaded. +// * +// * @return the list of programs found in db. +// */ +// List<Program> getAllProgram(); +// +// /** +// * Get the program for the given {@code id}. +// * +// * Note: his zone is loaded. +// * +// * @param id id of the program to load +// * @return the loaded program +// */ +// Program getProgram(String id); +// +// @Transactional(readOnly = false) +// Program createProgram(Program bean); +// +// @Transactional(readOnly = false) +// Program saveProgram(Program bean); - /** - * Get the program for the given {@code id}. - * - * Note: his zone is loaded. - * - * @param id id of the program to load - * @return the loaded program - */ - Program getProgram(String id); - - @Transactional(readOnly = false) - Program createProgram(Program bean); - - @Transactional(readOnly = false) - Program saveProgram(Program bean); - //------------------------------------------------------------------------// //-- Cruise methods --// //------------------------------------------------------------------------// - List<Cruise> getAllCruise(String programId); +// List<Cruise> getAllCruise(String programId); +// +// Cruise getCruise(String id); +// +// @Transactional(readOnly = false) +// Cruise createCruise(Cruise bean); +// +// @Transactional(readOnly = false) +// Cruise saveCruise(Cruise bean, boolean updateVessel, boolean updateGear); +// +// CaracteristicMap getGearCaracteristics(String cruiseId, +// String gearId, +// short rankOrder); +// +// boolean isOperationUseGears(Integer cruiseId, Collection<Gear> gears); +// +// @Transactional(readOnly = false) +// void saveGearCaracteristics(Gear gear, Cruise cruise); - Cruise getCruise(String id); - - @Transactional(readOnly = false) - Cruise createCruise(Cruise bean); - - @Transactional(readOnly = false) - Cruise saveCruise(Cruise bean, boolean updateVessel, boolean updateGear); - - CaracteristicMap getGearCaracteristics(String cruiseId, - String gearId, - short rankOrder); - - boolean isOperationUseGears(Integer cruiseId, Collection<Gear> gears); - - @Transactional(readOnly = false) - void saveGearCaracteristics(Gear gear, Cruise cruise); - //------------------------------------------------------------------------// //-- Protocol methods --// //------------------------------------------------------------------------// - /** - * The protocol used by the persistence lay (used to consolidate entites). - * - * @return The protocol used by the persistence layer - * @see #setProtocol(TuttiProtocol) - * @since 2.6 - */ - TuttiProtocol getProtocol(); +// /** +// * The protocol used by the persistence lay (used to consolidate entites). +// * +// * @return The protocol used by the persistence layer +// * @see #setProtocol(TuttiProtocol) +// * @since 2.6 +// */ +// TuttiProtocol getProtocol(); +// +// /** +// * Set the protocol to use by the persistence layer. +// * +// * @param protocol the new protocol to use (can be null) +// * @see #getProtocol() +// * @since 2.6 +// */ +// void setProtocol(TuttiProtocol protocol); +// +// List<String> getAllProtocolNames(); +// +// List<TuttiProtocol> getAllProtocol(); +// +// boolean isProtocolExist(String id); +// +// TuttiProtocol getProtocol(String id); +// +// @Transactional(readOnly = false) +// TuttiProtocol createProtocol(TuttiProtocol bean); +// +// @Transactional(readOnly = false) +// TuttiProtocol saveProtocol(TuttiProtocol bean); +// +// @Transactional(readOnly = false) +// void deleteProtocol(String id); - /** - * Set the protocol to use by the persistence layer. - * - * @param protocol the new protocol to use (can be null) - * @see #getProtocol() - * @since 2.6 - */ - void setProtocol(TuttiProtocol protocol); - - List<String> getAllProtocolNames(); - - List<TuttiProtocol> getAllProtocol(); - - boolean isProtocolExist(String id); - - TuttiProtocol getProtocol(String id); - - @Transactional(readOnly = false) - TuttiProtocol createProtocol(TuttiProtocol bean); - - @Transactional(readOnly = false) - TuttiProtocol saveProtocol(TuttiProtocol bean); - - @Transactional(readOnly = false) - void deleteProtocol(String id); - //------------------------------------------------------------------------// //-- FishingOperation methods --// //------------------------------------------------------------------------// - int getFishingOperationCount(String cruiseId); +// int getFishingOperationCount(String cruiseId); +// +// List<String> getAllFishingOperationIds(String cruiseId); +// +// List<FishingOperation> getAllFishingOperation(String cruiseId); +// +// FishingOperation getFishingOperation(String id); +// +// List<Vessel> getFishingOperationSecondaryVessel(String fishingOperationId); +// +// @Transactional(readOnly = false) +// FishingOperation createFishingOperation(FishingOperation bean); +// +// @Transactional(readOnly = false) +// FishingOperation saveFishingOperation(FishingOperation bean); +// +// @Transactional(readOnly = false) +// void deleteFishingOperation(String id); - List<String> getAllFishingOperationIds(String cruiseId); - - List<FishingOperation> getAllFishingOperation(String cruiseId); - - FishingOperation getFishingOperation(String id); - - List<Vessel> getFishingOperationSecondaryVessel(String fishingOperationId); - - @Transactional(readOnly = false) - FishingOperation createFishingOperation(FishingOperation bean); - - @Transactional(readOnly = false) - FishingOperation saveFishingOperation(FishingOperation bean); - - @Transactional(readOnly = false) - void deleteFishingOperation(String id); - //------------------------------------------------------------------------// //-- CatchBatch methods --// //------------------------------------------------------------------------// - /** - * @param operationId id of the fishing operation - * @return {@code true} if there is a catchBatch for the given fishing - * operation, {@code false} otherwise. - * @since 2.2 - */ - boolean isFishingOperationWithCatchBatch(String operationId); +// /** +// * @param operationId id of the fishing operation +// * @return {@code true} if there is a catchBatch for the given fishing +// * operation, {@code false} otherwise. +// * @since 2.2 +// */ +// boolean isFishingOperationWithCatchBatch(String operationId); +// +// /** +// * Get the catchBatch from the fishing Operation id. +// * +// * If batch model is not compatible with Tutti then a +// * {@link InvalidBatchModelException} will be thrown. +// * +// * @param id id of the fihsing operation +// * @return found catchbatch +// * @throws InvalidBatchModelException if batch model is not compatible +// * with Tutti. +// */ +// CatchBatch getCatchBatchFromFishingOperation(String id) throws InvalidBatchModelException; +// +// /** +// * Create the given CatchBatch and return it. +// * +// * @param bean catchBatch to create +// * @return created catchBatch +// */ +// @Transactional(readOnly = false) +// CatchBatch createCatchBatch(CatchBatch bean); +// +// /** +// * Save the given catchBatch and return it. +// * +// * @param bean batch to save +// * @return the saved catchBatch +// */ +// @Transactional(readOnly = false) +// CatchBatch saveCatchBatch(CatchBatch bean); - /** - * Get the catchBatch from the fishing Operation id. - * - * If batch model is not compatible with Tutti then a - * {@link InvalidBatchModelException} will be thrown. - * - * @param id id of the fihsing operation - * @return found catchbatch - * @throws InvalidBatchModelException if batch model is not compatible - * with Tutti. - */ - CatchBatch getCatchBatchFromFishingOperation(String id) throws InvalidBatchModelException; - - /** - * Create the given CatchBatch and return it. - * - * @param bean catchBatch to create - * @return created catchBatch - */ - @Transactional(readOnly = false) - CatchBatch createCatchBatch(CatchBatch bean); - - /** - * Save the given catchBatch and return it. - * - * @param bean batch to save - * @return the saved catchBatch - */ - @Transactional(readOnly = false) - CatchBatch saveCatchBatch(CatchBatch bean); - //------------------------------------------------------------------------// //-- Species Batch methods --// //------------------------------------------------------------------------// - /** - * Get the batch parent of all root {@link SpeciesBatch} for the given - * fishing operation. - * - * Note: All childs of the batch should be loaded here. - * - * @param fishingOperationId if of the fishing operation to seek - * @param sampleCategoryModel [optional] sample category model to check - * @return the list of root {@link SpeciesBatch} - * @throws InvalidBatchModelException if batch does not respect the sample category model - * @since 2.4 - */ - BatchContainer<SpeciesBatch> getRootSpeciesBatch(String fishingOperationId, - SampleCategoryModel sampleCategoryModel) throws InvalidBatchModelException; +// /** +// * Get the batch parent of all root {@link SpeciesBatch} for the given +// * fishing operation. +// * +// * Note: All childs of the batch should be loaded here. +// * +// * @param fishingOperationId if of the fishing operation to seek +// * @param sampleCategoryModel [optional] sample category model to check +// * @return the list of root {@link SpeciesBatch} +// * @throws InvalidBatchModelException if batch does not respect the sample category model +// * @since 2.4 +// */ +// BatchContainer<SpeciesBatch> getRootSpeciesBatch(String fishingOperationId, +// SampleCategoryModel sampleCategoryModel) throws InvalidBatchModelException; +// +// @Transactional(readOnly = false) +// SpeciesBatch createSpeciesBatch(SpeciesBatch bean, String parentBatchId); +// +// @Transactional(readOnly = false) +// SpeciesBatch saveSpeciesBatch(SpeciesBatch bean); +// +// @Transactional(readOnly = false) +// void deleteSpeciesBatch(String id); +// +// @Transactional(readOnly = false) +// void deleteSpeciesSubBatch(String id); +// +// @Transactional(readOnly = false) +// void changeSpeciesBatchSpecies(String batchId, Species species); +// +// /** +// * Get all frequencies for the given species batch. +// * +// * @param speciesBatchId the id of the species batch to seek. +// * @return the list of frequencies for the given specues batch id +// * @since 1.0 +// */ +// List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency(String speciesBatchId); +// +// /** +// * Get all frequencies for the given root species batch container. +// * +// * @param batchContainer the root batch containter +// * @return the list of species frequencies indexed by their species +// * @since 3.3 +// */ +// Multimap<Species, SpeciesBatchFrequency> getAllSpeciesBatchFrequencyForBatch(BatchContainer<SpeciesBatch> batchContainer); +// +// /** +// * Save all given {@link SpeciesBatchFrequency} into the given +// * {@code speciesBatchId}. If some are not existing then creates them. +// * +// * Note: This will as a side effect remove all previous frequency for this species batch. +// * +// * @param speciesBatchId id of the {@link SpeciesBatch} to use +// * @param frequencies list of frequencies to create or update +// * @return the persisted list of frequencies +// * @since 1.0 +// */ +// @Transactional(readOnly = false) +// List<SpeciesBatchFrequency> saveSpeciesBatchFrequency(String speciesBatchId, +// List<SpeciesBatchFrequency> frequencies); - @Transactional(readOnly = false) - SpeciesBatch createSpeciesBatch(SpeciesBatch bean, String parentBatchId); - - @Transactional(readOnly = false) - SpeciesBatch saveSpeciesBatch(SpeciesBatch bean); - - @Transactional(readOnly = false) - void deleteSpeciesBatch(String id); - - @Transactional(readOnly = false) - void deleteSpeciesSubBatch(String id); - - @Transactional(readOnly = false) - void changeSpeciesBatchSpecies(String batchId, Species species); - - /** - * Get all frequencies for the given species batch. - * - * @param speciesBatchId the id of the species batch to seek. - * @return the list of frequencies for the given specues batch id - * @since 1.0 - */ - List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency(String speciesBatchId); - - /** - * Get all frequencies for the given root species batch container. - * - * @param batchContainer the root batch containter - * @return the list of species frequencies indexed by their species - * @since 3.3 - */ - Multimap<Species, SpeciesBatchFrequency> getAllSpeciesBatchFrequencyForBatch(BatchContainer<SpeciesBatch> batchContainer); - - /** - * Save all given {@link SpeciesBatchFrequency} into the given - * {@code speciesBatchId}. If some are not existing then creates them. - * - * Note: This will as a side effect remove all previous frequency for this species batch. - * - * @param speciesBatchId id of the {@link SpeciesBatch} to use - * @param frequencies list of frequencies to create or update - * @return the persisted list of frequencies - * @since 1.0 - */ - @Transactional(readOnly = false) - List<SpeciesBatchFrequency> saveSpeciesBatchFrequency(String speciesBatchId, - List<SpeciesBatchFrequency> frequencies); - //------------------------------------------------------------------------// //-- Benthos Batch methods --// //------------------------------------------------------------------------// - /** - * Get the batch parent of all root {@link BenthosBatch} for the given - * fishing operation. - * - * Note: All childs of the batch should be loaded here. - * - * @param fishingOperationId if of the fishing operation to seek - * @param sampleCategoryModel [optional] sample category model to check - * @return the list of root {@link BenthosBatch} - * @throws InvalidBatchModelException if batch does not respect the sample category model - * @since 2.4 - */ - BatchContainer<BenthosBatch> getRootBenthosBatch(String fishingOperationId, - SampleCategoryModel sampleCategoryModel) throws InvalidBatchModelException; +// /** +// * Get the batch parent of all root {@link BenthosBatch} for the given +// * fishing operation. +// * +// * Note: All childs of the batch should be loaded here. +// * +// * @param fishingOperationId if of the fishing operation to seek +// * @param sampleCategoryModel [optional] sample category model to check +// * @return the list of root {@link BenthosBatch} +// * @throws InvalidBatchModelException if batch does not respect the sample category model +// * @since 2.4 +// */ +// BatchContainer<BenthosBatch> getRootBenthosBatch(String fishingOperationId, +// SampleCategoryModel sampleCategoryModel) throws InvalidBatchModelException; +// +// @Transactional(readOnly = false) +// BenthosBatch createBenthosBatch(BenthosBatch bean, String parentBatchId); +// +// @Transactional(readOnly = false) +// BenthosBatch saveBenthosBatch(BenthosBatch bean); +// +// @Transactional(readOnly = false) +// void deleteBenthosBatch(String id); +// +// @Transactional(readOnly = false) +// void deleteBenthosSubBatch(String id); +// +// @Transactional(readOnly = false) +// void changeBenthosBatchSpecies(String batchId, Species species); +// +// /** +// * Get all frequencies for the given species batch. +// * +// * @param benthosBatchId the id of the species batch to seek. +// * @return the list of frequencies for the given specues batch id +// * @since 1.0 +// */ +// List<BenthosBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId); +// +// /** +// * Get all frequencies for the given root benthos batch container. +// * +// * @param batchContainer the root batch containter +// * @return the list of benthos frequencies indexed by their species +// * @since 3.3 +// */ +// Multimap<Species, BenthosBatchFrequency> getAllBenthosBatchFrequencyForBatch(BatchContainer<BenthosBatch> batchContainer); +// +// /** +// * Save all given {@link BenthosBatchFrequency} into the given +// * {@code benthosBatchId}. If some are not existing then creates them. +// * +// * Note: This will as a side effect remove all previous frequency for this species batch. +// * +// * @param benthosBatchId id of the {@link BenthosBatch} to use +// * @param frequencies list of frequencies to create or update +// * @return the persisted list of frequencies +// * @since 1.0 +// */ +// @Transactional(readOnly = false) +// List<BenthosBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, +// List<BenthosBatchFrequency> frequencies); - @Transactional(readOnly = false) - BenthosBatch createBenthosBatch(BenthosBatch bean, String parentBatchId); - - @Transactional(readOnly = false) - BenthosBatch saveBenthosBatch(BenthosBatch bean); - - @Transactional(readOnly = false) - void deleteBenthosBatch(String id); - - @Transactional(readOnly = false) - void deleteBenthosSubBatch(String id); - - @Transactional(readOnly = false) - void changeBenthosBatchSpecies(String batchId, Species species); - - /** - * Get all frequencies for the given species batch. - * - * @param benthosBatchId the id of the species batch to seek. - * @return the list of frequencies for the given specues batch id - * @since 1.0 - */ - List<BenthosBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId); - - /** - * Get all frequencies for the given root benthos batch container. - * - * @param batchContainer the root batch containter - * @return the list of benthos frequencies indexed by their species - * @since 3.3 - */ - Multimap<Species, BenthosBatchFrequency> getAllBenthosBatchFrequencyForBatch(BatchContainer<BenthosBatch> batchContainer); - - /** - * Save all given {@link BenthosBatchFrequency} into the given - * {@code benthosBatchId}. If some are not existing then creates them. - * - * Note: This will as a side effect remove all previous frequency for this species batch. - * - * @param benthosBatchId id of the {@link BenthosBatch} to use - * @param frequencies list of frequencies to create or update - * @return the persisted list of frequencies - * @since 1.0 - */ - @Transactional(readOnly = false) - List<BenthosBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, - List<BenthosBatchFrequency> frequencies); - //------------------------------------------------------------------------// //-- MarineLitter Batch methods --// //------------------------------------------------------------------------// - /** - * Get the batch parent of all root {@link MarineLitterBatch} for the given - * fishing operation. - * - * Note: All childs of the batch should be loaded here. - * - * @param fishingOperationId if of the fishing operation to seek - * @return the list of root {@link MarineLitterBatch} - * @since 1.3 - */ - BatchContainer<MarineLitterBatch> getRootMarineLitterBatch(String fishingOperationId); +// /** +// * Get the batch parent of all root {@link MarineLitterBatch} for the given +// * fishing operation. +// * +// * Note: All childs of the batch should be loaded here. +// * +// * @param fishingOperationId if of the fishing operation to seek +// * @return the list of root {@link MarineLitterBatch} +// * @since 1.3 +// */ +// BatchContainer<MarineLitterBatch> getRootMarineLitterBatch(String fishingOperationId); +// +// @Transactional(readOnly = false) +// MarineLitterBatch createMarineLitterBatch(MarineLitterBatch bean); +// +// @Transactional(readOnly = false) +// MarineLitterBatch saveMarineLitterBatch(MarineLitterBatch bean); +// +// @Transactional(readOnly = false) +// void deleteMarineLitterBatch(String id); - @Transactional(readOnly = false) - MarineLitterBatch createMarineLitterBatch(MarineLitterBatch bean); - - @Transactional(readOnly = false) - MarineLitterBatch saveMarineLitterBatch(MarineLitterBatch bean); - - @Transactional(readOnly = false) - void deleteMarineLitterBatch(String id); - //------------------------------------------------------------------------// //-- Accidental Batch methods --// //------------------------------------------------------------------------// - List<AccidentalBatch> getAllAccidentalBatch(String fishingOperationId); +// List<AccidentalBatch> getAllAccidentalBatch(String fishingOperationId); +// +// @Transactional(readOnly = false) +// AccidentalBatch createAccidentalBatch(AccidentalBatch bean); +// +// @Transactional(readOnly = false) +// AccidentalBatch saveAccidentalBatch(AccidentalBatch bean); +// +// @Transactional(readOnly = false) +// void deleteAccidentalBatch(String id); - @Transactional(readOnly = false) - AccidentalBatch createAccidentalBatch(AccidentalBatch bean); - - @Transactional(readOnly = false) - AccidentalBatch saveAccidentalBatch(AccidentalBatch bean); - - @Transactional(readOnly = false) - void deleteAccidentalBatch(String id); - //------------------------------------------------------------------------// //-- IndividualObservation Batch methods --// //------------------------------------------------------------------------// - List<IndividualObservationBatch> getAllIndividualObservationBatch(String fishingOperationId); - - @Transactional(readOnly = false) - IndividualObservationBatch createIndividualObservationBatch(IndividualObservationBatch bean); - - @Transactional(readOnly = false) - IndividualObservationBatch saveIndividualObservationBatch(IndividualObservationBatch bean); - - @Transactional(readOnly = false) - void deleteIndividualObservationBatch(String id); +// List<IndividualObservationBatch> getAllIndividualObservationBatch(String fishingOperationId); +// +// @Transactional(readOnly = false) +// IndividualObservationBatch createIndividualObservationBatch(IndividualObservationBatch bean); +// +// @Transactional(readOnly = false) +// IndividualObservationBatch saveIndividualObservationBatch(IndividualObservationBatch bean); +// +// @Transactional(readOnly = false) +// void deleteIndividualObservationBatch(String id); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -25,14 +25,8 @@ */ import com.google.common.base.Predicate; -import com.google.common.collect.ArrayListMultimap; import com.google.common.collect.Maps; import com.google.common.collect.Multimap; -import fr.ifremer.adagio.core.dao.technical.DatabaseSchemaDao; -import fr.ifremer.adagio.core.dao.technical.DatabaseSchemaUpdateException; -import fr.ifremer.adagio.core.dao.technical.VersionNotFoundException; -import fr.ifremer.adagio.core.service.technical.CacheService; -import fr.ifremer.adagio.core.service.technical.sanity.DatabaseSanityService; import fr.ifremer.tutti.persistence.entities.CaracteristicMap; import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.entities.data.AccidentalBatch; @@ -73,16 +67,15 @@ import fr.ifremer.tutti.persistence.service.ProtocolPersistenceService; import fr.ifremer.tutti.persistence.service.ReferentialPersistenceService; import fr.ifremer.tutti.persistence.service.SpeciesBatchPersistenceService; +import fr.ifremer.tutti.persistence.service.TechnicalPersistenceService; import fr.ifremer.tutti.persistence.service.TuttiEnumerationFile; import fr.ifremer.tutti.persistence.service.TuttiPersistenceServiceLocator; import org.apache.commons.lang3.StringUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import org.nuiton.jaxx.application.ApplicationTechnicalException; import org.nuiton.util.Version; -import org.nuiton.util.VersionUtil; -import org.springframework.beans.factory.annotation.Autowired; +import javax.annotation.Resource; import java.io.File; import java.io.IOException; import java.util.Collection; @@ -101,53 +94,48 @@ private static final Log log = LogFactory.getLog(TuttiPersistenceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; - @Autowired + @Resource(name = "programPersistenceService") protected ProgramPersistenceService programService; - @Autowired + @Resource(name = "cruisePersistenceService") protected CruisePersistenceService cruiseService; - @Autowired + @Resource(name = "fishingOperationPersistenceService") protected FishingOperationPersistenceService fishingOperationService; - @Autowired + @Resource(name = "batchPersistenceService") protected CatchBatchPersistenceService catchBatchService; - @Autowired + @Resource(name = "speciesBatchPersistenceService") protected SpeciesBatchPersistenceService speciesBatchService; - @Autowired + @Resource(name = "benthosBatchPersistenceService") protected BenthosBatchPersistenceService benthosBatchService; - @Autowired +// @Resource(name = "commonBatchPersistenceService") +// protected CommonBatchPersistenceService commonBatchService; + + @Resource(name = "marineLitterBatchPersistenceService") protected MarineLitterBatchPersistenceService marineLitterBatchService; - @Autowired + @Resource(name = "accidentalBatchPersistenceService") protected AccidentalBatchPersistenceService accidentalBatchService; - @Autowired + @Resource(name = "individualObservationBatchPersistenceService") protected IndividualObservationBatchPersistenceService individualObservationBatchService; - @Autowired + @Resource(name = "protocolPersistenceService") protected ProtocolPersistenceService protocolService; - @Autowired + @Resource(name = "attachmentPersistenceService") protected AttachmentPersistenceService attachmentService; - @Autowired - protected DatabaseSanityService databaseSanityService; + @Resource(name = "technicalPersistenceService") + protected TechnicalPersistenceService technicalPersistenceService; - @Autowired - protected CacheService cacheService; - - @Autowired - protected DatabaseSchemaDao databaseSchemaDao; - - protected Predicate<SpeciesAbleBatch> batchVracPredicate; - @Override public String getImplementationName() { return "Persistence Adagio implementation"; @@ -155,64 +143,37 @@ @Override public void clearAllCaches() { - cacheService.clearAllCaches(); + technicalPersistenceService.clearAllCaches(); } @Override public TuttiEnumerationFile getEnumerationFile() { - return referentialService.getEnumerationFile(); + return technicalPersistenceService.getEnumerationFile(); } @Override public <V> V invoke(Callable<V> call) { - - try { - V result = call.call(); - return result; - } catch (RuntimeException e) { - throw e; - } catch (Exception e) { - throw new ApplicationTechnicalException(e); - } + return technicalPersistenceService.invoke(call); } @Override public Version getDbVersion() { - Version version = getDbVersion0(); - return version; + return technicalPersistenceService.getDbVersion(); } - private Version getDbVersion0() { - fr.ifremer.adagio.core.dao.technical.Version version; - try { - version = databaseSchemaDao.getSchemaVersion(); - } catch (VersionNotFoundException e) { - if (log.isErrorEnabled()) { - log.error("Could not find db version", e); - } - version = null; - } - return version == null ? null : VersionUtil.valueOf(version.toString()); - } - @Override public Version getApplicationVersion() { - fr.ifremer.adagio.core.dao.technical.Version version = databaseSchemaDao.getSchemaVersionIfUpdate(); - return VersionUtil.valueOf(version.toString()); + return technicalPersistenceService.getApplicationVersion(); } @Override public void updateSchema() { - try { - databaseSchemaDao.updateSchema(); - } catch (DatabaseSchemaUpdateException e) { - throw new ApplicationTechnicalException(e.getCause()); - } + technicalPersistenceService.updateSchema(); } @Override public void sanityDb() { - databaseSanityService.sanity(); + technicalPersistenceService.sanityDb(); } @Override @@ -227,15 +188,12 @@ catchBatchService.init(); speciesBatchService.init(); benthosBatchService.init(); +// commonBatchService.init(); marineLitterBatchService.init(); accidentalBatchService.init(); individualObservationBatchService.init(); protocolService.init(); attachmentService.init(); - - TuttiEnumerationFile enumerationFile = getEnumerationFile(); - - batchVracPredicate = TuttiEntities.newSpeciesAbleBatchCategoryPredicate(enumerationFile.PMFM_ID_SORTED_UNSORTED, enumerationFile.QUALITATIVE_VRAC_ID); } protected boolean close; @@ -257,6 +215,7 @@ catchBatchService.close(); speciesBatchService.close(); benthosBatchService.close(); +// commonBatchService.close(); marineLitterBatchService.close(); accidentalBatchService.close(); individualObservationBatchService.close(); @@ -337,6 +296,11 @@ } @Override + public Species getSpeciesByReferenceTaxonId(Integer referenceTaxonId) { + return referentialService.getSpeciesByReferenceTaxonId(referenceTaxonId); + } + + @Override public List<Caracteristic> getAllCaracteristic() { return referentialService.getAllCaracteristic(); } @@ -433,12 +397,12 @@ @Override public boolean isVracBatch(SpeciesAbleBatch speciesBatch) { - return batchVracPredicate.apply(speciesBatch); + return referentialService.isVracBatch(speciesBatch); } @Override public Predicate<SpeciesAbleBatch> getVracBatchPredicate() { - return batchVracPredicate; + return referentialService.getVracBatchPredicate(); } @Override @@ -482,6 +446,11 @@ } @Override + public TuttiLocation getLocation(String id) { + return referentialService.getLocation(id); + } + + @Override public List<Species> importTemporarySpecies(List<Species> species) { return referentialService.importTemporarySpecies(species); } @@ -531,6 +500,11 @@ attachmentService.deleteAttachment(attachmentId); } + @Override + public void deleteAllAttachment(AttachementObjectTypeEnum objectType, Integer... objectIds) { + attachmentService.deleteAllAttachment(objectType, objectIds); + } + //------------------------------------------------------------------------// //-- Program methods --// //------------------------------------------------------------------------// @@ -626,6 +600,11 @@ } @Override + public List<String> getAllProtocolId() { + return protocolService.getAllProtocolId(); + } + + @Override public TuttiProtocol saveProtocol(TuttiProtocol bean) { return protocolService.saveProtocol(bean); } @@ -717,6 +696,11 @@ } @Override + public Collection<FishingOperation> saveFishingOperations(Collection<FishingOperation> beans) { + return fishingOperationService.saveFishingOperations(beans); + } + + @Override public void deleteFishingOperation(String id) { fishingOperationService.deleteFishingOperation(id); } @@ -745,6 +729,11 @@ return catchBatchService.saveCatchBatch(bean); } + @Override + public void deleteCatchBatch(String fishingOperationId) { + catchBatchService.deleteCatchBatch(fishingOperationId); + } + //------------------------------------------------------------------------// //-- Species Batch methods --// //------------------------------------------------------------------------// @@ -786,27 +775,9 @@ @Override public Multimap<Species, SpeciesBatchFrequency> getAllSpeciesBatchFrequencyForBatch(BatchContainer<SpeciesBatch> batchContainer) { - - Multimap<Species, SpeciesBatchFrequency> result = ArrayListMultimap.create(); - for (SpeciesBatch speciesBatch : batchContainer.getChildren()) { - getAllSpeciesBatchFrequencyForBatch(speciesBatch, result); - } - return result; + return speciesBatchService.getAllSpeciesBatchFrequencyForBatch(batchContainer); } - protected void getAllSpeciesBatchFrequencyForBatch(SpeciesBatch batch, - Multimap<Species, SpeciesBatchFrequency> result) { - - List<SpeciesBatchFrequency> speciesBatchFrequency = getAllSpeciesBatchFrequency(batch.getId()); - result.putAll(batch.getSpecies(), speciesBatchFrequency); - - if (!batch.isChildBatchsEmpty()) { - for (SpeciesBatch child : batch.getChildBatchs()) { - getAllSpeciesBatchFrequencyForBatch(child, result); - } - } - } - @Override public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency(String speciesBatchId, List<SpeciesBatchFrequency> frequencies) { return speciesBatchService.saveSpeciesBatchFrequency(speciesBatchId, frequencies); @@ -853,28 +824,9 @@ @Override public Multimap<Species, BenthosBatchFrequency> getAllBenthosBatchFrequencyForBatch(BatchContainer<BenthosBatch> batchContainer) { - - Multimap<Species, BenthosBatchFrequency> result = ArrayListMultimap.create(); - - for (BenthosBatch speciesBatch : batchContainer.getChildren()) { - getAllBenthosBatchFrequencyForBatch(speciesBatch, result); - } - return result; + return benthosBatchService.getAllBenthosBatchFrequencyForBatch(batchContainer); } - protected void getAllBenthosBatchFrequencyForBatch(BenthosBatch batch, - Multimap<Species, BenthosBatchFrequency> result) { - - List<BenthosBatchFrequency> speciesBatchFrequency = getAllBenthosBatchFrequency(batch.getId()); - result.putAll(batch.getSpecies(), speciesBatchFrequency); - - if (!batch.isChildBatchsEmpty()) { - for (BenthosBatch child : batch.getChildBatchs()) { - getAllBenthosBatchFrequencyForBatch(child, result); - } - } - } - @Override public List<BenthosBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, List<BenthosBatchFrequency> frequencies) { @@ -929,6 +881,11 @@ accidentalBatchService.deleteAccidentalBatch(id); } + @Override + public void deleteAccidentalBatchForFishingOperation(String fishingOperationId) { + accidentalBatchService.deleteAccidentalBatchForFishingOperation(fishingOperationId); + } + //------------------------------------------------------------------------// //-- IndividualObservation Batch methods --// //------------------------------------------------------------------------// @@ -953,6 +910,11 @@ individualObservationBatchService.deleteIndividualObservationBatch(id); } + @Override + public void deleteIndividualObservationBatchForFishingOperation(String fishingOperationId) { + individualObservationBatchService.deleteIndividualObservationBatchForFishingOperation(fishingOperationId); + } + //------------------------------------------------------------------------// //-- Internal methods --// //------------------------------------------------------------------------// Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/TuttiPersistenceNoDbImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -679,6 +679,46 @@ public void close() throws IOException { } + @Override + public void deleteAccidentalBatchForFishingOperation(String fishingOperationId) { + throw notImplemented(); + } + + @Override + public void deleteAllAttachment(AttachementObjectTypeEnum objectType, Integer... objectIds) { + throw notImplemented(); + } + + @Override + public void deleteCatchBatch(String fishingOperationId) { + throw notImplemented(); + } + + @Override + public Collection<FishingOperation> saveFishingOperations(Collection<FishingOperation> beans) { + throw notImplemented(); + } + + @Override + public void deleteIndividualObservationBatchForFishingOperation(String fishingOperationId) { + throw notImplemented(); + } + + @Override + public List<String> getAllProtocolId() { + throw notImplemented(); + } + + @Override + public TuttiLocation getLocation(String id) { + throw notImplemented(); + } + + @Override + public Species getSpeciesByReferenceTaxonId(Integer referenceTaxonId) { + throw notImplemented(); + } + protected RuntimeException notImplemented() { return new RuntimeException("method not implemented"); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/TuttiEntities.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -418,7 +418,7 @@ * Take a {@code 5} digit context beacuse of rounding stuff to * get exactly 4 correct digits. */ - private static final MathContext MATH_CONTEXT_4_DIGIT = new MathContext(5); + private static final MathContext MATH_CONTEXT_4_DIGIT = new MathContext(4); private static DecimalFormatSymbols symbols; Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/referential/CaracteristicQualitativeValues.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/referential/CaracteristicQualitativeValues.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/referential/CaracteristicQualitativeValues.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -0,0 +1,17 @@ +package fr.ifremer.tutti.persistence.entities.referential; + +public class CaracteristicQualitativeValues extends AbstractCaracteristicQualitativeValues { + + public static CaracteristicQualitativeValue getCaracteristicQualitativeValue(Caracteristic caracteristic, Integer id) { + CaracteristicQualitativeValue result = null; + if (id != null && !caracteristic.isQualitativeValueEmpty()) { + for (CaracteristicQualitativeValue caracteristicQualitativeValue : caracteristic.getQualitativeValue()) { + if (id.equals(caracteristicQualitativeValue.getIdAsInt())) { + result = caracteristicQualitativeValue; + break; + } + } + } + return result; + } +} \ No newline at end of file Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/referential/CaracteristicQualitativeValues.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AbstractPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -33,8 +33,8 @@ import org.hibernate.SessionFactory; import org.hibernate.classic.Session; import org.hibernate.type.Type; -import org.springframework.beans.factory.annotation.Autowired; +import javax.annotation.Resource; import java.io.Serializable; import java.sql.Timestamp; import java.util.Calendar; @@ -61,10 +61,10 @@ * * @since 0.3 */ - @Autowired + @Resource protected SessionFactory sessionFactory; - @Autowired + @Resource(name = "tuttiEnumerationFile") protected TuttiEnumerationFile enumeration; protected TuttiConfiguration config; @@ -77,7 +77,8 @@ Preconditions.checkNotNull( config, "No config found in " + - TuttiConfiguration.class.getName()); + TuttiConfiguration.class.getName() + ); } } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AccidentalBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AccidentalBatchPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AccidentalBatchPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -47,7 +47,6 @@ import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.hibernate.type.IntegerType; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.stereotype.Service; @@ -68,7 +67,7 @@ private static final Log log = LogFactory.getLog(AccidentalBatchPersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; @Resource(name = "samplePersistenceHelper") Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/AttachmentPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -30,7 +30,6 @@ import fr.ifremer.adagio.core.dao.data.measure.file.MeasurementFileDao; import fr.ifremer.adagio.core.dao.referential.ObjectTypeImpl; import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; -import org.nuiton.jaxx.application.ApplicationIOUtil; import fr.ifremer.tutti.persistence.entities.data.AttachementObjectTypeEnum; import fr.ifremer.tutti.persistence.entities.data.Attachment; import fr.ifremer.tutti.persistence.entities.data.Attachments; @@ -39,7 +38,7 @@ import org.apache.commons.logging.LogFactory; import org.hibernate.type.IntegerType; import org.hibernate.type.StringType; -import org.springframework.beans.factory.annotation.Autowired; +import org.nuiton.jaxx.application.ApplicationIOUtil; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.dao.InvalidDataAccessResourceUsageException; import org.springframework.stereotype.Service; @@ -68,7 +67,7 @@ protected static final String ATTACHMENT_PATH_FORMAT = "%1$s/OBJ%2$s/%1$s-OBJ%2$s-%3$s.%4$s"; - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; @Resource(name = "measurementFileDao") Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -24,6 +24,7 @@ * #L% */ +import com.google.common.collect.Multimap; import fr.ifremer.tutti.persistence.InvalidBatchModelException; import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; import fr.ifremer.tutti.persistence.entities.data.BatchContainer; @@ -97,6 +98,15 @@ List<BenthosBatchFrequency> getAllBenthosBatchFrequency(String benthosBatchId); /** + * Get all frequencies for the given root benthos batch container. + * + * @param batchContainer the root batch containter + * @return the list of benthos frequencies indexed by their species + * @since 3.3 + */ + Multimap<Species, BenthosBatchFrequency> getAllBenthosBatchFrequencyForBatch(BatchContainer<BenthosBatch> batchContainer); + + /** * Save all given {@link BenthosBatchFrequency} into the given * {@code benthosBatchId}. If some are not existing then creates them. * Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -25,7 +25,9 @@ */ import com.google.common.base.Preconditions; +import com.google.common.collect.ArrayListMultimap; import com.google.common.collect.Lists; +import com.google.common.collect.Multimap; import com.google.common.collect.Sets; import fr.ifremer.adagio.core.dao.data.batch.Batch; import fr.ifremer.adagio.core.dao.data.batch.CatchBatch; @@ -46,10 +48,10 @@ import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.Species; import fr.ifremer.tutti.persistence.service.batch.BatchPersistenceHelper; +import fr.ifremer.tutti.persistence.service.batch.BatchTreeHelper; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataIntegrityViolationException; import org.springframework.stereotype.Service; @@ -76,12 +78,18 @@ private static final Log log = LogFactory.getLog(BenthosBatchPersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; @Resource(name = "batchPersistenceHelper") protected BatchPersistenceHelper batchHelper; + @Resource(name = "batchTreeHelper") + protected BatchTreeHelper batchTreeHelper; + + @Resource(name = "measurementPersistenceHelper") + protected MeasurementPersistenceHelper measurementPersistenceHelper; + protected SampleCategoryModel sampleCategoryModel; //------------------------------------------------------------------------// @@ -103,13 +111,14 @@ CatchBatch catchBatch = batchHelper.getRootCatchBatchByFishingOperationId(fishingOperationId, false); // Vrac / Benthos - SortingBatch vracBenthosBatch = batchHelper.getSortingBatch( - catchBatch, - "Vrac > Benthos > Alive Itemized", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, - enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED - ); + SortingBatch vracBenthosBatch = batchTreeHelper.getBenthosVracAliveItemizedRootBatch(catchBatch); +// SortingBatch vracBenthosBatch = batchHelper.getSortingBatch( +// catchBatch, +// "Vrac > Benthos > Alive Itemized", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, +// enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED +// ); BatchContainer<BenthosBatch> result = new BatchContainer<BenthosBatch>(); if (vracBenthosBatch != null) { @@ -134,12 +143,13 @@ } // Hors-Vrac / Benthos - SortingBatch horsVracBenthosBatch = batchHelper.getSortingBatch( - catchBatch, - "Hors Vrac > Benthos", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS - ); + SortingBatch horsVracBenthosBatch = batchTreeHelper.getBenthosHorsVracRootBatch(catchBatch); +// SortingBatch horsVracBenthosBatch = batchHelper.getSortingBatch( +// catchBatch, +// "Hors Vrac > Benthos", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS +// ); if (horsVracBenthosBatch != null) { for (Batch batch : horsVracBenthosBatch.getChildBatchs()) { SortingBatch source = (SortingBatch) batch; @@ -274,6 +284,28 @@ } @Override + public Multimap<Species, BenthosBatchFrequency> getAllBenthosBatchFrequencyForBatch(BatchContainer<BenthosBatch> batchContainer) { + Multimap<Species, BenthosBatchFrequency> result = ArrayListMultimap.create(); + for (BenthosBatch speciesBatch : batchContainer.getChildren()) { + getAllSpeciesBatchFrequencyForBatch(speciesBatch, result); + } + return result; + } + + protected void getAllSpeciesBatchFrequencyForBatch(BenthosBatch batch, + Multimap<Species, BenthosBatchFrequency> result) { + + List<BenthosBatchFrequency> speciesBatchFrequency = getAllBenthosBatchFrequency(batch.getId()); + result.putAll(batch.getSpecies(), speciesBatchFrequency); + + if (!batch.isChildBatchsEmpty()) { + for (BenthosBatch child : batch.getChildBatchs()) { + getAllSpeciesBatchFrequencyForBatch(child, result); + } + } + } + + @Override public List<BenthosBatchFrequency> saveBenthosBatchFrequency(String benthosBatchId, List<BenthosBatchFrequency> frequencies) { Preconditions.checkNotNull(benthosBatchId); @@ -386,7 +418,7 @@ if (source.getSortingMeasurements().size() == 1) { sm = source.getSortingMeasurements().iterator().next(); } else if (source.getReferenceTaxon() != null && source.getReferenceTaxon().getId() != null) { - sm = batchHelper.getInheritedSortingMeasurement(source); + sm = measurementPersistenceHelper.getInheritedSortingMeasurement(source); } if (sm != null) { boolean isSamplingCategory = sampleCategoryModel.containsCategoryId( @@ -521,12 +553,12 @@ // Weight or SampleCategoryWeight if (source.getWeight() == null && source.getSampleCategoryWeight() != null) { - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getSampleCategoryWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); } else if (source.getWeight() != null && source.getSampleCategoryWeight() == null) { - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); @@ -541,7 +573,7 @@ samplingRatioText = samplingRatioText.replaceAll(",", "."); target.setSamplingRatioText(samplingRatioText); target.setSamplingRatio(source.getWeight() / source.getSampleCategoryWeight()); - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); @@ -552,7 +584,7 @@ Integer pmfmId = source.getSampleCategoryId(); // Do not store sorting measurement if pmfm = SORTED (already store in an ancestor batch) if (!pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { - SortingMeasurement sortingMeasurement = batchHelper.setSortingMeasurement( + SortingMeasurement sortingMeasurement = measurementPersistenceHelper.setSortingMeasurement( target, pmfmId, source.getSampleCategoryValue()); @@ -630,7 +662,7 @@ // Weight or SampleCategoryWeight if (source.getWeight() != null) { - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); @@ -639,7 +671,7 @@ // Sorting measurement if ((source.getLengthStepCaracteristic() != null && source.getLengthStep() != null)) { Integer pmfmId = source.getLengthStepCaracteristic().getIdAsInt(); - SortingMeasurement sortingMeasurement = batchHelper.setSortingMeasurement(target, pmfmId, + SortingMeasurement sortingMeasurement = measurementPersistenceHelper.setSortingMeasurement(target, pmfmId, source.getLengthStep()); notChangedSortingMeasurements.remove(sortingMeasurement); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CatchBatchPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -36,11 +36,11 @@ import fr.ifremer.tutti.persistence.entities.data.CatchBatch; import fr.ifremer.tutti.persistence.entities.data.CatchBatchBean; import fr.ifremer.tutti.persistence.service.batch.BatchPersistenceHelper; +import fr.ifremer.tutti.persistence.service.batch.BatchTreeHelper; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.hibernate.FlushMode; import org.hibernate.type.IntegerType; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataIntegrityViolationException; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.stereotype.Service; @@ -57,15 +57,21 @@ private static final Log log = LogFactory.getLog(CatchBatchPersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; - @Autowired + @Resource(name = "attachmentPersistenceService") protected AttachmentPersistenceService attachmentPersistenceService; @Resource(name = "batchPersistenceHelper") protected BatchPersistenceHelper batchHelper; + @Resource(name = "batchTreeHelper") + protected BatchTreeHelper batchTreeHelper; + + @Resource(name = "measurementPersistenceHelper") + protected MeasurementPersistenceHelper measurementPersistenceHelper; + //------------------------------------------------------------------------// //-- CatchBatch methods --// //------------------------------------------------------------------------// @@ -95,11 +101,12 @@ } // Vrac - SortingBatch vracBatch = batchHelper.getSortingBatch( - source, - "Vrac", - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_VRAC_ID); + SortingBatch vracBatch = batchTreeHelper.getVracBatch(source); +// SortingBatch vracBatch = batchHelper.getSortingBatch( +// source, +// "Vrac", +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_VRAC_ID); if (vracBatch != null) { @@ -107,33 +114,36 @@ result.setCatchTotalSortedTremisWeight(vracBatch.getWeightBeforeSampling()); // Vrac > Species - SortingBatch vracSpeciesBatch = batchHelper.getSortingBatch( - vracBatch, - "Vrac > Species", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + SortingBatch vracSpeciesBatch = batchTreeHelper.getSpeciesVracRootBatch(vracBatch); +// SortingBatch vracSpeciesBatch = batchHelper.getSortingBatch( +// vracBatch, +// "Vrac > Species", +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); if (vracSpeciesBatch != null) { result.setSpeciesTotalSortedWeight(vracSpeciesBatch.getWeight()); // Vrac > Species > Inert - SortingBatch inertBatch = batchHelper.getSortingBatch( - vracSpeciesBatch, - "Vrac > Species > Inert", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT); + SortingBatch inertBatch = batchTreeHelper.getSpeciesVracInertRootBatch(vracSpeciesBatch); +// SortingBatch inertBatch = batchHelper.getSortingBatch( +// vracSpeciesBatch, +// "Vrac > Species > Inert", +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT); if (inertBatch != null) { result.setSpeciesTotalInertWeight(inertBatch.getWeight()); } // Vrac > Species > Alive not itemized - SortingBatch livingNotItemizedBatch = batchHelper.getSortingBatch( - vracSpeciesBatch, - "Vrac > Species > Alive not itemized", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED); + SortingBatch livingNotItemizedBatch = batchTreeHelper.getSpeciesVracAliveNotItemizedRootBatch(vracSpeciesBatch); +// SortingBatch livingNotItemizedBatch = batchHelper.getSortingBatch( +// vracSpeciesBatch, +// "Vrac > Species > Alive not itemized", +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED); if (livingNotItemizedBatch != null) { result.setSpeciesTotalLivingNotItemizedWeight(livingNotItemizedBatch.getWeight()); @@ -141,32 +151,35 @@ } // Vrac > Benthos - SortingBatch vracBenthosBatch = batchHelper.getSortingBatch( - vracBatch, - "Vrac > Benthos", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + SortingBatch vracBenthosBatch = batchTreeHelper.getBenthosVracRootBatch(vracBatch); +// SortingBatch vracBenthosBatch = batchHelper.getSortingBatch( +// vracBatch, +// "Vrac > Benthos", +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); if (vracBenthosBatch != null) { result.setBenthosTotalSortedWeight(vracBenthosBatch.getWeight()); // Vrac > Benthos > Inert - SortingBatch inertBatch = batchHelper.getSortingBatch( - vracBenthosBatch, - "Vrac > Benthos > Inert", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT); + SortingBatch inertBatch = batchTreeHelper.getBenthosVracInertRootBatch(vracBenthosBatch); +// SortingBatch inertBatch = batchHelper.getSortingBatch( +// vracBenthosBatch, +// "Vrac > Benthos > Inert", +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT); if (inertBatch != null) { result.setBenthosTotalInertWeight(inertBatch.getWeight()); } // Vrac > Benthos > Alive no itemized - SortingBatch livingNotItemizedBatch = batchHelper.getSortingBatch( - vracBenthosBatch, - "Vrac > Benthos > Alive not itemized", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED); + SortingBatch livingNotItemizedBatch = batchTreeHelper.getBenthosVracAliveNotItemizedRootBatch(vracBenthosBatch); +// SortingBatch livingNotItemizedBatch = batchHelper.getSortingBatch( +// vracBenthosBatch, +// "Vrac > Benthos > Alive not itemized", +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED); if (livingNotItemizedBatch != null) { result.setBenthosTotalLivingNotItemizedWeight(livingNotItemizedBatch.getWeight()); @@ -175,34 +188,38 @@ } // Hors Vrac - SortingBatch horsVracBatch = batchHelper.getSortingBatch( - source, - "Hors Vrac", - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_HORS_VRAC_ID); + SortingBatch horsVracBatch = batchTreeHelper.getHorsVracBatch(source); +// SortingBatch horsVracBatch = batchHelper.getSortingBatch( +// source, +// "Hors Vrac", +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_HORS_VRAC_ID); if (horsVracBatch != null) { // Hors Vrac > Species - batchHelper.getSortingBatch( - horsVracBatch, - "Hors Vrac > Species", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + batchTreeHelper.getSpeciesHorsVracRootBatch(horsVracBatch); +// batchHelper.getSortingBatch( +// horsVracBatch, +// "Hors Vrac > Species", +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); // Hors Vrac > Benthos - batchHelper.getSortingBatch( - horsVracBatch, - "Hors Vrac > Benthos", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + batchTreeHelper.getBenthosHorsVracRootBatch(horsVracBatch); +// batchHelper.getSortingBatch( +// horsVracBatch, +// "Hors Vrac > Benthos", +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); // Hors Vrac > MarineLitter - SortingBatch marineLitterBatch = batchHelper.getSortingBatch( - horsVracBatch, - "Hors Vrac > MarineLitter", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER); + SortingBatch marineLitterBatch = batchTreeHelper.getMarineLitterRootBatch(horsVracBatch); +// SortingBatch marineLitterBatch = batchHelper.getSortingBatch( +// horsVracBatch, +// "Hors Vrac > MarineLitter", +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER); if (marineLitterBatch != null) { result.setMarineLitterTotalWeight(marineLitterBatch.getWeight()); @@ -210,11 +227,12 @@ } // Non trié - SortingBatch unsortedBatch = batchHelper.getSortingBatch( - source, - "Unsorted", - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_UNSORTED_ID); + SortingBatch unsortedBatch = batchTreeHelper.getRejectedBatch(source); +// SortingBatch unsortedBatch = batchHelper.getSortingBatch( +// source, +// "Unsorted", +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_UNSORTED_ID); if (unsortedBatch != null) { result.setCatchTotalRejectedWeight(unsortedBatch.getWeight()); @@ -310,7 +328,7 @@ // Total Weight if (source.getCatchTotalWeight() != null) { - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getCatchTotalWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); @@ -321,9 +339,11 @@ quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); } - SortingBatch vracBatch = batchHelper.getVracBatch(target); + SortingBatch vracBatch = batchTreeHelper.getVracBatch(target); +// SortingBatch vracBatch = batchHelper.getVracBatch(target); - SortingBatch horsVracBatch = batchHelper.getHorsVracBatch(target); + SortingBatch horsVracBatch = batchTreeHelper.getHorsVracBatch(target); +// SortingBatch horsVracBatch = batchHelper.getHorsVracBatch(target); SortingBatch horsVracSpeciesRootBatch = null; SortingBatch horsVracBenthosRootBatch = null; @@ -331,12 +351,12 @@ if (horsVracBatch != null) { - horsVracSpeciesRootBatch = batchHelper.getSpeciesHorsVracRootBatch( - horsVracBatch); - horsVracBenthosRootBatch = batchHelper.getBenthosHorsVracRootBatch( - horsVracBatch); - horsVracMarineLitterRootBatch = batchHelper.getMarineLitterRootBatch( - horsVracBatch); + horsVracSpeciesRootBatch = batchTreeHelper.getSpeciesHorsVracRootBatch(horsVracBatch); +// horsVracSpeciesRootBatch = batchHelper.getSpeciesHorsVracRootBatch(horsVracBatch); + horsVracBenthosRootBatch = batchTreeHelper.getBenthosHorsVracRootBatch(horsVracBatch); +// horsVracBenthosRootBatch = batchHelper.getBenthosHorsVracRootBatch(horsVracBatch); + horsVracMarineLitterRootBatch = batchTreeHelper.getMarineLitterRootBatch(horsVracBatch); +// horsVracMarineLitterRootBatch = batchHelper.getMarineLitterRootBatch(horsVracBatch); } SortingBatch speciesVracBatch = null; @@ -350,26 +370,27 @@ SortingBatch benthosVracAliveItemizeRootBatch = null; if (vracBatch != null) { - speciesVracBatch = batchHelper.getSpeciesVracRootBatch( - vracBatch); + speciesVracBatch = batchTreeHelper.getSpeciesVracRootBatch(vracBatch); +// speciesVracBatch = batchHelper.getSpeciesVracRootBatch(vracBatch); if (speciesVracBatch != null) { - speciesVracAliveNotItemizeRootBatch = batchHelper.getSpeciesVracAliveNotItemizeRootBatch( - speciesVracBatch); - speciesVracInertRootBatch = batchHelper.getSpeciesVracInertRootBatch( - speciesVracBatch); - speciesVracAliveItemizeRootBatch = batchHelper.getSpeciesVracAliveItemizeRootBatch( - speciesVracBatch); + speciesVracAliveNotItemizeRootBatch = batchTreeHelper.getSpeciesVracAliveNotItemizedRootBatch(speciesVracBatch); +// speciesVracAliveNotItemizeRootBatch = batchHelper.getSpeciesVracAliveNotItemizedRootBatch(speciesVracBatch); + speciesVracInertRootBatch = batchTreeHelper.getSpeciesVracInertRootBatch(speciesVracBatch); +// speciesVracInertRootBatch = batchHelper.getSpeciesVracInertRootBatch(speciesVracBatch); + speciesVracAliveItemizeRootBatch = batchTreeHelper.getSpeciesVracAliveItemizedRootBatch(speciesVracBatch); +// speciesVracAliveItemizeRootBatch = batchHelper.getSpeciesVracAliveItemizeRootBatch(speciesVracBatch); } - benthosVracBatch = batchHelper.getBenthosVracRootBatch(vracBatch); + benthosVracBatch = batchTreeHelper.getBenthosVracRootBatch(vracBatch); +// benthosVracBatch = batchHelper.getBenthosVracRootBatch(vracBatch); if (benthosVracBatch != null) { - benthosVracAliveNotItemizeRootBatch = batchHelper.getBenthosVracAliveNotItemizeRootBatch( - benthosVracBatch); - benthosVracInertRootBatch = batchHelper.getBenthosVracInertRootBatch( - benthosVracBatch); - benthosVracAliveItemizeRootBatch = batchHelper.getBenthosVracAliveItemizeRootBatch( - benthosVracBatch); + benthosVracAliveNotItemizeRootBatch = batchTreeHelper.getBenthosVracAliveNotItemizedRootBatch(benthosVracBatch); +// benthosVracAliveNotItemizeRootBatch = batchHelper.getBenthosVracAliveNotItemizedRootBatch(benthosVracBatch); + benthosVracInertRootBatch = batchTreeHelper.getBenthosVracInertRootBatch(benthosVracBatch); +// benthosVracInertRootBatch = batchHelper.getBenthosVracInertRootBatch(benthosVracBatch); + benthosVracAliveItemizeRootBatch = batchTreeHelper.getBenthosVracAliveItemizedRootBatch(benthosVracBatch); +// benthosVracAliveItemizeRootBatch = batchHelper.getBenthosVracAliveItemizeRootBatch(benthosVracBatch); } } @@ -412,8 +433,9 @@ needHorsVracBenthos || needHorsVracMarineLitter; - boolean needUnsorted = batchHelper.getRejectedBatch(target) != null || + boolean needUnsorted = batchTreeHelper.getRejectedBatch(target) != null || source.getCatchTotalRejectedWeight() != null; +// boolean needUnsorted = batchHelper.getRejectedBatch(target) != null || // --------------------------------------------------------------------- // Vrac @@ -421,7 +443,7 @@ if (needVrac) { - vracBatch = batchHelper.getOrCreateVracBatch( + vracBatch = batchTreeHelper.getOrCreateVracBatch( target, source.getCatchTotalSortedCarousselWeight(), source.getCatchTotalSortedTremisWeight()); @@ -431,7 +453,7 @@ // --------------------------------------------------------------------- // Vrac / Species // --------------------------------------------------------------------- - speciesVracBatch = batchHelper.getOrCreateSpeciesVracRootBatch( + speciesVracBatch = batchTreeHelper.getOrCreateSpeciesVracRootBatch( target, vracBatch, source.getSpeciesTotalSortedWeight()); @@ -440,7 +462,7 @@ // --------------------------------------------------------------------- // Vrac / Species / Alive not itemized // --------------------------------------------------------------------- - batchHelper.getOrCreateSpeciesVracAliveNotItemizeRootBatch( + batchTreeHelper.getOrCreateSpeciesVracAliveNotItemizedRootBatch( target, speciesVracBatch, source.getSpeciesTotalLivingNotItemizedWeight()); @@ -450,7 +472,7 @@ // --------------------------------------------------------------------- // Vrac / Species / Inert (not alive) // --------------------------------------------------------------------- - batchHelper.getOrCreateSpeciesVracInertRootBatch( + batchTreeHelper.getOrCreateSpeciesVracInertRootBatch( target, speciesVracBatch, source.getSpeciesTotalInertWeight()); @@ -460,7 +482,7 @@ // --------------------------------------------------------------------- // Vrac / Species / Alive itemized // --------------------------------------------------------------------- - batchHelper.getOrCreateSpeciesVracAliveItemizeRootBatch( + batchTreeHelper.getOrCreateSpeciesVracAliveItemizedRootBatch( target, speciesVracBatch); } @@ -471,7 +493,7 @@ // --------------------------------------------------------------------- // Vrac > Benthos // --------------------------------------------------------------------- - benthosVracBatch = batchHelper.getOrCreateBenthosVracRootBatch( + benthosVracBatch = batchTreeHelper.getOrCreateBenthosVracRootBatch( target, vracBatch, source.getBenthosTotalSortedWeight()); @@ -480,7 +502,7 @@ // --------------------------------------------------------------------- // Vrac / Benthos / Alive not itemized // --------------------------------------------------------------------- - batchHelper.getOrCreateBenthosVracAliveNotItemizeRootBatch( + batchTreeHelper.getOrCreateBenthosVracAliveNotItemizedRootBatch( target, benthosVracBatch, source.getBenthosTotalLivingNotItemizedWeight()); @@ -490,7 +512,7 @@ // --------------------------------------------------------------------- // Vrac / Benthos / Inert (not alive) // --------------------------------------------------------------------- - batchHelper.getOrCreateBenthosVracInertRootBatch( + batchTreeHelper.getOrCreateBenthosVracInertRootBatch( target, benthosVracBatch, source.getBenthosTotalInertWeight()); @@ -500,7 +522,7 @@ // --------------------------------------------------------------------- // Vrac / Benthos / Alive itemized // --------------------------------------------------------------------- - batchHelper.getOrCreateBenthosVracAliveItemizeRootBatch( + batchTreeHelper.getOrCreateBenthosVracAliveItemizedRootBatch( target, benthosVracBatch); } @@ -513,13 +535,13 @@ // --------------------------------------------------------------------- // Hors Vrac // --------------------------------------------------------------------- - horsVracBatch = batchHelper.getOrCreateHorsVracBatch(target); + horsVracBatch = batchTreeHelper.getOrCreateHorsVracBatch(target); if (needHorsVracSpecies) { // --------------------------------------------------------------------- // Hors Vrac > Species // --------------------------------------------------------------------- - batchHelper.getOrCreateSpeciesHorsVracRootBatch( + batchTreeHelper.getOrCreateSpeciesHorsVracRootBatch( target, horsVracBatch); } @@ -528,7 +550,7 @@ // --------------------------------------------------------------------- // Hors Vrac > Benthos // --------------------------------------------------------------------- - batchHelper.getOrCreateBenthosHorsVracRootBatch( + batchTreeHelper.getOrCreateBenthosHorsVracRootBatch( target, horsVracBatch); } @@ -537,7 +559,7 @@ // --------------------------------------------------------------------- // Hors Vrac > MarineLitter // --------------------------------------------------------------------- - batchHelper.getOrCreateMarineLitterRootBatch( + batchTreeHelper.getOrCreateMarineLitterRootBatch( target, horsVracBatch, source.getMarineLitterTotalWeight()); @@ -548,7 +570,7 @@ // --------------------------------------------------------------------- // Unsorted (=rejected) // --------------------------------------------------------------------- - batchHelper.getOrCreateRejectedBatch( + batchTreeHelper.getOrCreateRejectedBatch( target, source.getCatchTotalRejectedWeight()); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/CruisePersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -82,7 +82,6 @@ import org.hibernate.type.ShortType; import org.hibernate.type.StringType; import org.nuiton.jaxx.application.ApplicationBusinessException; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.stereotype.Service; @@ -110,16 +109,16 @@ private static final Log log = LogFactory.getLog(CruisePersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; - @Autowired + @Resource(name = "programPersistenceService") protected ProgramPersistenceService programService; - @Autowired + @Resource(name = "fishingOperationPersistenceService") protected FishingOperationPersistenceService fishingOperationService; - @Autowired + @Resource(name = "vesselPersonFeaturesPersistenceHelper") protected VesselPersonFeaturesPersistenceHelper vesselPersonFeaturesPersistenceHelper; @Resource(name = "scientificCruiseDao") @@ -695,7 +694,8 @@ } return result; } - }); + } + ); boolean gearRemoved = isOperationUseGears(target.getId(), gears); if (gearRemoved) { Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/FishingOperationPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -81,7 +81,6 @@ import org.apache.commons.logging.LogFactory; import org.hibernate.FlushMode; import org.hibernate.type.IntegerType; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataIntegrityViolationException; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.stereotype.Service; @@ -110,22 +109,22 @@ private static final Log log = LogFactory.getLog(FishingOperationPersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; - @Autowired + @Resource(name = "batchPersistenceService") protected CatchBatchPersistenceService catchBatchService; - @Autowired + @Resource(name = "accidentalBatchPersistenceService") protected AccidentalBatchPersistenceService accidentalBatchService; - @Autowired + @Resource(name = "attachmentPersistenceService") protected AttachmentPersistenceService attachmentPersistenceService; - @Autowired + @Resource(name = "vesselPersonFeaturesPersistenceHelper") protected VesselPersonFeaturesPersistenceHelper vesselPersonFeaturesPersistenceHelper; - @Autowired + @Resource(name = "measurementPersistenceHelper") protected MeasurementPersistenceHelper measurementPersistenceHelper; @Resource(name = "scientificCruiseDao") @@ -411,6 +410,7 @@ } return result; } + @Override public FishingOperation createFishingOperation(FishingOperation bean) { Preconditions.checkNotNull(bean); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/IndividualObservationBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/IndividualObservationBatchPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/IndividualObservationBatchPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -50,7 +50,6 @@ import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; import org.hibernate.type.IntegerType; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.stereotype.Service; @@ -71,10 +70,10 @@ private static final Log log = LogFactory.getLog(IndividualObservationBatchPersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; - @Autowired + @Resource(name = "attachmentPersistenceService") protected AttachmentPersistenceService attachmentPersistenceService; @Resource(name = "samplePersistenceHelper") Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/MarineLitterBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/MarineLitterBatchPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/MarineLitterBatchPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -40,9 +40,9 @@ import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; import fr.ifremer.tutti.persistence.service.batch.BatchPersistenceHelper; +import fr.ifremer.tutti.persistence.service.batch.BatchTreeHelper; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Service; import javax.annotation.Resource; @@ -61,12 +61,18 @@ private static final Log log = LogFactory.getLog(MarineLitterBatchPersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; @Resource(name = "batchPersistenceHelper") protected BatchPersistenceHelper batchHelper; + @Resource(name = "measurementPersistenceHelper") + protected MeasurementPersistenceHelper measurementPersistenceHelper; + + @Resource(name = "batchTreeHelper") + protected BatchTreeHelper batchTreeHelper; + protected Integer marineLitterCategory; protected Integer marineLitterSizeCategory; @@ -95,9 +101,9 @@ CatchBatch catchBatch = batchHelper.getRootCatchBatchByFishingOperationId(fishingOperationId, false); // Get marine litter root batch - SortingBatch sortingBatch = getMarineLitterParentBatch(catchBatch); + SortingBatch sortingBatch = batchTreeHelper.getMarineLitterRootBatch(catchBatch); - BatchContainer<MarineLitterBatch> result = new BatchContainer<MarineLitterBatch>(); + BatchContainer<MarineLitterBatch> result = new BatchContainer<>(); if (sortingBatch != null) { result.setId(sortingBatch.getId()); @@ -219,7 +225,7 @@ // If parent and root need to be set if (target.getId() == null || target.getRootBatch() == null) { - setBatchParents(target, catchBatch); + batchHelper.setMarineLitterBatchParents(target, catchBatch); } // RankOrder (initialize once, at creation) @@ -245,7 +251,7 @@ // Weight if (source.getWeight() != null) { - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); @@ -254,7 +260,7 @@ // MarineLitterCategory if (source.getMarineLitterCategory() != null) { - SortingMeasurement measurement = batchHelper.setSortingMeasurement( + SortingMeasurement measurement = measurementPersistenceHelper.setSortingMeasurement( target, marineLitterCategory, source.getMarineLitterCategory().getIdAsInt() @@ -265,7 +271,7 @@ // MarineLitterSizeCategory if (source.getMarineLitterSizeCategory() != null) { - SortingMeasurement measurement = batchHelper.setSortingMeasurement( + SortingMeasurement measurement = measurementPersistenceHelper.setSortingMeasurement( target, marineLitterSizeCategory, source.getMarineLitterSizeCategory().getIdAsInt() @@ -299,37 +305,20 @@ } } - public void setBatchParents(SortingBatch target, CatchBatch catchBatch) { - - Preconditions.checkNotNull(target); - - SortingBatch parentBatch = getMarineLitterParentBatch(catchBatch); - - if (parentBatch == null) { - - SortingBatch horsVracBatch = batchHelper.getOrCreateHorsVracBatch( - catchBatch - ); - - parentBatch = batchHelper.getOrCreateMarineLitterRootBatch( - catchBatch, - horsVracBatch, - null - ); - } - - target.setParentBatch(parentBatch); - target.setRootBatch(catchBatch); - } - - protected SortingBatch getMarineLitterParentBatch(CatchBatch catchBatch) { - SortingBatch parentBatch = batchHelper.getSortingBatch( - catchBatch, - "Hors Vrac > Marine Litter", - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_HORS_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER); - return parentBatch; - } +// public void setMarineLitterBatchParents(SortingBatch target, CatchBatch catchBatch) { +// +// Preconditions.checkNotNull(target); +// +// SortingBatch parentBatch = batchTreeHelper.getMarineLitterRootBatch(catchBatch); +// +// if (parentBatch == null) { +// +// SortingBatch horsVracBatch = batchHelper.getOrCreateHorsVracBatch(catchBatch); +// +// parentBatch = batchHelper.getOrCreateMarineLitterRootBatch(catchBatch, horsVracBatch, null); +// } +// +// target.setParentBatch(parentBatch); +// target.setRootBatch(catchBatch); +// } } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/MeasurementPersistenceHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/MeasurementPersistenceHelper.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/MeasurementPersistenceHelper.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -24,13 +24,20 @@ * #L% */ +import com.google.common.base.Preconditions; +import fr.ifremer.adagio.core.dao.data.batch.Batch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; import fr.ifremer.adagio.core.dao.data.measure.Measurement; +import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; +import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; import fr.ifremer.adagio.core.dao.referential.pmfm.QualitativeValue; import fr.ifremer.adagio.core.dao.referential.pmfm.QualitativeValueImpl; import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; import org.springframework.stereotype.Component; +import javax.annotation.Resource; import java.io.Serializable; /** @@ -42,6 +49,12 @@ @Component("measurementPersistenceHelper") public class MeasurementPersistenceHelper extends AbstractPersistenceService { + @Resource(name = "referentialPersistenceService") + protected ReferentialPersistenceService referentialService; + + @Resource(name = "catchBatchDao") + protected CatchBatchExtendDao catchBatchDao; + public void setMeasurement(Measurement measurement, Caracteristic caracteristic, Serializable value) { @@ -68,4 +81,38 @@ break; } } + + public SortingMeasurement setSortingMeasurement( + SortingBatch sortingBatch, + Integer pmfmId, + Serializable value) { + Preconditions.checkNotNull(pmfmId); + Preconditions.checkNotNull(value); + + Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); + SortingMeasurement sortingMeasurement = catchBatchDao.getSortingMeasurement( + sortingBatch, pmfmId, getRecorderDepartmentId(), true); + setMeasurement(sortingMeasurement, + caracteristic, + value); + return sortingMeasurement; + } + + public QuantificationMeasurement setWeightMeasurementQuantificationMeasurement(Batch batch, Float weightValue) { + return catchBatchDao.setQuantificationMeasurement(batch, enumeration.PMFM_ID_WEIGHT_MEASURED, getRecorderDepartmentId(), weightValue, true); + } + + public QuantificationMeasurement getWeightMeasurementQuantificationMeasurement(Batch batch) { + QuantificationMeasurement quantificationMeasurement = catchBatchDao.getQuantificationMeasurement(batch, enumeration.PMFM_ID_WEIGHT_MEASURED, getRecorderDepartmentId(), false); + return quantificationMeasurement; + } + + public SortingMeasurement getInheritedSortingMeasurement(SortingBatch sortingBatch) { + return catchBatchDao.getInheritedSortingMeasurement(sortingBatch, enumeration.PMFM_ID_SORTED_UNSORTED); + } + + protected Integer getRecorderDepartmentId() { + // TODO BL : voir si on peut récupérer le departement (du 1er saisisseur ?) + return enumeration.DEPARTMENT_ID_UNKNOWN_RECORDER_DEPARTMENT; + } } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProgramPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProgramPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProgramPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -39,7 +39,6 @@ import org.apache.commons.logging.LogFactory; import org.hibernate.type.IntegerType; import org.hibernate.type.StringType; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.stereotype.Service; @@ -59,7 +58,7 @@ private static final Log log = LogFactory.getLog(ProgramPersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; @Resource(name = "programDao") Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -24,10 +24,12 @@ * #L% */ +import com.google.common.base.Predicate; import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; import fr.ifremer.tutti.persistence.entities.data.Cruise; import fr.ifremer.tutti.persistence.entities.data.Program; import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModel; +import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.Gear; import fr.ifremer.tutti.persistence.entities.referential.ObjectType; @@ -266,6 +268,10 @@ @Cacheable(value = "pmfmById", key = "#pmfmId") Caracteristic getCaracteristic(Integer pmfmId); + Predicate<SpeciesAbleBatch> getVracBatchPredicate(); + + boolean isVracBatch(SpeciesAbleBatch speciesBatch); + @Cacheable(value = "objectTypeByCode", key = "#objectTypeCode") ObjectType getObjectType(String objectTypeCode); @@ -309,5 +315,5 @@ @CacheEvict(value = "gears", allEntries = true) List<Gear> importTemporaryGear(List<Gear> gears); - TuttiEnumerationFile getEnumerationFile(); +// TuttiEnumerationFile getEnumerationFile(); } Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ReferentialPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -25,6 +25,7 @@ */ import com.google.common.base.Preconditions; +import com.google.common.base.Predicate; import com.google.common.collect.Iterables; import com.google.common.collect.Lists; import fr.ifremer.adagio.core.dao.administration.user.PersonExtendDao; @@ -37,6 +38,7 @@ import fr.ifremer.adagio.core.dao.referential.taxon.TaxonRefVO; import fr.ifremer.adagio.core.service.technical.CacheService; import fr.ifremer.tutti.persistence.entities.TuttiEntities; +import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValues; @@ -114,6 +116,17 @@ @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService thisService; + protected Predicate<SpeciesAbleBatch> batchVracPredicate; + + @Override + public void init() { + super.init(); + + batchVracPredicate = TuttiEntities.newSpeciesAbleBatchCategoryPredicate( + enumeration.PMFM_ID_SORTED_UNSORTED, + enumeration.QUALITATIVE_VRAC_ID); + } + //------------------------------------------------------------------------// //-- ReferentialPersistenceService implentation --// //------------------------------------------------------------------------// @@ -353,7 +366,7 @@ "projectMemberProfilId", IntegerType.INSTANCE, enumeration.USER_PROFIL_ID_PROJECT_MEMBER, "userProfilId", IntegerType.INSTANCE, enumeration.USER_PROFIL_ID_USER, "departementPrefixCode", StringType.INSTANCE, enumeration.USER_PROFIL_ID_DEPARTEMENT_PREFIX - ); + ); List<Person> result = Lists.newArrayList(); while (list.hasNext()) { @@ -667,6 +680,16 @@ } @Override + public boolean isVracBatch(SpeciesAbleBatch speciesBatch) { + return batchVracPredicate.apply(speciesBatch); + } + + @Override + public Predicate<SpeciesAbleBatch> getVracBatchPredicate() { + return batchVracPredicate; + } + + @Override public List<Species> importTemporarySpecies(List<Species> species) { List<Species> result = Lists.newArrayList(); for (Species source : species) { @@ -723,10 +746,10 @@ return Collections.unmodifiableList(result); } - @Override - public TuttiEnumerationFile getEnumerationFile() { - return enumeration; - } +// @Override +// public TuttiEnumerationFile getEnumerationFile() { +// return enumeration; +// } //------------------------------------------------------------------------// //-- Internal methods --// Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SamplePersistenceHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SamplePersistenceHelper.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SamplePersistenceHelper.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -35,7 +35,6 @@ import fr.ifremer.tutti.persistence.entities.data.AttachementObjectTypeEnum; import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import org.hibernate.type.IntegerType; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; import javax.annotation.Resource; @@ -52,13 +51,13 @@ @Component("samplePersistenceHelper") public class SamplePersistenceHelper extends AbstractPersistenceService { - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; - @Autowired + @Resource(name = "measurementPersistenceHelper") protected MeasurementPersistenceHelper measurementPersistenceHelper; - @Autowired + @Resource(name = "attachmentPersistenceService") protected AttachmentPersistenceService attachmentPersistenceService; @Resource(name = "sampleDao") Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -24,6 +24,7 @@ * #L% */ +import com.google.common.collect.Multimap; import fr.ifremer.tutti.persistence.InvalidBatchModelException; import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; import fr.ifremer.tutti.persistence.entities.data.BatchContainer; @@ -99,6 +100,15 @@ List<SpeciesBatchFrequency> getAllSpeciesBatchFrequency(String speciesBatchId); /** + * Get all frequencies for the given root species batch container. + * + * @param batchContainer the root batch containter + * @return the list of species frequencies indexed by their species + * @since 3.3 + */ + Multimap<Species, SpeciesBatchFrequency> getAllSpeciesBatchFrequencyForBatch(BatchContainer<SpeciesBatch> batchContainer); + + /** * Save all given {@link SpeciesBatchFrequency} into the given * {@code speciesBatchId}. If some are not existing then creates them. * Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -25,7 +25,9 @@ */ import com.google.common.base.Preconditions; +import com.google.common.collect.ArrayListMultimap; import com.google.common.collect.Lists; +import com.google.common.collect.Multimap; import com.google.common.collect.Sets; import fr.ifremer.adagio.core.dao.data.batch.Batch; import fr.ifremer.adagio.core.dao.data.batch.CatchBatch; @@ -46,10 +48,10 @@ import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.Species; import fr.ifremer.tutti.persistence.service.batch.BatchPersistenceHelper; +import fr.ifremer.tutti.persistence.service.batch.BatchTreeHelper; import org.apache.commons.collections.CollectionUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataIntegrityViolationException; import org.springframework.stereotype.Service; @@ -76,12 +78,18 @@ private static final Log log = LogFactory.getLog(SpeciesBatchPersistenceServiceImpl.class); - @Autowired + @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; @Resource(name = "batchPersistenceHelper") protected BatchPersistenceHelper batchHelper; + @Resource(name = "batchTreeHelper") + protected BatchTreeHelper batchTreeHelper; + + @Resource(name = "measurementPersistenceHelper") + protected MeasurementPersistenceHelper measurementPersistenceHelper; + protected SampleCategoryModel sampleCategoryModel; @Override @@ -103,13 +111,14 @@ CatchBatch catchBatch = batchHelper.getRootCatchBatchByFishingOperationId(fishingOperationId, false); // Vrac / Species - SortingBatch vracSpeciesBatch = batchHelper.getSortingBatch( - catchBatch, - "Vrac > Species > Alive Itemized", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED - ); + SortingBatch vracSpeciesBatch = batchTreeHelper.getSpeciesVracAliveItemizedRootBatch(catchBatch); +// SortingBatch vracSpeciesBatch = batchHelper.getSortingBatch( +// catchBatch, +// "Vrac > Species > Alive Itemized", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, +// enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED +// ); // container of speciesBatch is arbitraty put on vrac type (there is // no common ancestor for all species batch). @@ -142,11 +151,12 @@ } // Hors-Vrac / Species - SortingBatch horsVracSpeciesBatch = batchHelper.getSortingBatch( - catchBatch, - "Hors Vrac > Species", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + SortingBatch horsVracSpeciesBatch = batchTreeHelper.getSpeciesHorsVracRootBatch(catchBatch); +// SortingBatch horsVracSpeciesBatch = batchHelper.getSortingBatch( +// catchBatch, +// "Hors Vrac > Species", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); if (horsVracSpeciesBatch != null) { for (Batch batch : horsVracSpeciesBatch.getChildBatchs()) { SortingBatch source = (SortingBatch) batch; @@ -286,6 +296,28 @@ } @Override + public Multimap<Species, SpeciesBatchFrequency> getAllSpeciesBatchFrequencyForBatch(BatchContainer<SpeciesBatch> batchContainer) { + Multimap<Species, SpeciesBatchFrequency> result = ArrayListMultimap.create(); + for (SpeciesBatch speciesBatch : batchContainer.getChildren()) { + getAllSpeciesBatchFrequencyForBatch(speciesBatch, result); + } + return result; + } + + protected void getAllSpeciesBatchFrequencyForBatch(SpeciesBatch batch, + Multimap<Species, SpeciesBatchFrequency> result) { + + List<SpeciesBatchFrequency> speciesBatchFrequency = getAllSpeciesBatchFrequency(batch.getId()); + result.putAll(batch.getSpecies(), speciesBatchFrequency); + + if (!batch.isChildBatchsEmpty()) { + for (SpeciesBatch child : batch.getChildBatchs()) { + getAllSpeciesBatchFrequencyForBatch(child, result); + } + } + } + + @Override public List<SpeciesBatchFrequency> saveSpeciesBatchFrequency( String speciesBatchId, List<SpeciesBatchFrequency> frequencies) { @@ -423,7 +455,7 @@ if (source.getSortingMeasurements().size() == 1) { sm = source.getSortingMeasurements().iterator().next(); } else if (source.getReferenceTaxon() != null && source.getReferenceTaxon().getId() != null) { - sm = batchHelper.getInheritedSortingMeasurement(source); + sm = measurementPersistenceHelper.getInheritedSortingMeasurement(source); } if (sm != null) { @@ -562,12 +594,12 @@ // Weight or SampleCategoryWeight if (source.getSampleCategoryWeight() != null && source.getWeight() == null) { - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getSampleCategoryWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); } else if (source.getWeight() != null && source.getSampleCategoryWeight() == null) { - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); @@ -582,7 +614,7 @@ samplingRatioText = samplingRatioText.replaceAll(",", "."); target.setSamplingRatioText(samplingRatioText); target.setSamplingRatio(source.getWeight() / source.getSampleCategoryWeight()); - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); @@ -593,7 +625,7 @@ Integer pmfmId = source.getSampleCategoryId(); // Do not store sorting measurement if pmfm = SORTED (already store in an ancestor batch) if (!pmfmId.equals(enumeration.PMFM_ID_SORTED_UNSORTED)) { - SortingMeasurement sortingMeasurement = batchHelper.setSortingMeasurement( + SortingMeasurement sortingMeasurement = measurementPersistenceHelper.setSortingMeasurement( target, pmfmId, source.getSampleCategoryValue()); @@ -671,7 +703,7 @@ // Weight or SampleCategoryWeight if (source.getWeight() != null) { - QuantificationMeasurement quantificationMeasurement = batchHelper.setWeightMeasurementQuantificationMeasurement( + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( target, source.getWeight()); notChangedQuantificationMeasurements.remove(quantificationMeasurement); @@ -680,8 +712,8 @@ // Sorting measurement if ((source.getLengthStepCaracteristic() != null && source.getLengthStep() != null)) { Integer pmfmId = source.getLengthStepCaracteristic().getIdAsInt(); - SortingMeasurement sortingMeasurement = batchHelper.setSortingMeasurement(target, pmfmId, - source.getLengthStep()); + SortingMeasurement sortingMeasurement = measurementPersistenceHelper.setSortingMeasurement(target, pmfmId, + source.getLengthStep()); notChangedSortingMeasurements.remove(sortingMeasurement); } Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -0,0 +1,54 @@ +package fr.ifremer.tutti.persistence.service; + +import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; +import org.nuiton.util.Version; +import org.springframework.transaction.annotation.Transactional; + +import java.util.concurrent.Callable; + +/** + * Contains some technical services. + * + * Created on 4/20/14. + * + * @author Tony Chemit <chemit(a)codelutin.com> + * @since 3.5 + */ +@Transactional(readOnly = true) +public interface TechnicalPersistenceService extends TuttiPersistenceServiceImplementor { + + /** + * @return the enumeration file (where all constant mapping are defined). + * @since 2.4 + */ + TuttiEnumerationFile getEnumerationFile(); + + /** + * To clear all caches. + * + * @since 1.0.1 + */ + void clearAllCaches(); + + /** + * To invoke the given call code. + * + * Note: this is mainly to execute a code in a single + * transaction. + * + * @param call call to invoke + * @param <V> return type + * @return the return of the call + * @since 2.4 + */ + @Transactional(readOnly = false) + <V> V invoke(Callable<V> call); + + Version getDbVersion(); + + Version getApplicationVersion(); + + void updateSchema(); + + void sanityDb(); +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceService.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -0,0 +1,100 @@ +package fr.ifremer.tutti.persistence.service; + +import fr.ifremer.adagio.core.dao.technical.DatabaseSchemaDao; +import fr.ifremer.adagio.core.dao.technical.DatabaseSchemaUpdateException; +import fr.ifremer.adagio.core.dao.technical.VersionNotFoundException; +import fr.ifremer.adagio.core.service.technical.CacheService; +import fr.ifremer.adagio.core.service.technical.sanity.DatabaseSanityService; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.nuiton.jaxx.application.ApplicationTechnicalException; +import org.nuiton.util.Version; +import org.nuiton.util.VersionUtil; +import org.springframework.stereotype.Service; + +import javax.annotation.Resource; +import java.util.concurrent.Callable; + +/** + * Created on 4/20/14. + * + * @author Tony Chemit <chemit(a)codelutin.com> + * @since 3.5 + */ +@Service("technicalPersistenceService") +public class TechnicalPersistenceServiceImpl extends AbstractPersistenceService implements TechnicalPersistenceService { + + /** Logger. */ + private static final Log log = LogFactory.getLog(TechnicalPersistenceServiceImpl.class); + + @Resource(name = "databaseSanityService") + protected DatabaseSanityService databaseSanityService; + + @Resource(name = "cacheService") + protected CacheService cacheService; + + @Resource(name = "databaseSchemaDao") + protected DatabaseSchemaDao databaseSchemaDao; + + @Override + public TuttiEnumerationFile getEnumerationFile() { + return enumeration; + } + + @Override + public <V> V invoke(Callable<V> call) { + + try { + V result = call.call(); + return result; + } catch (RuntimeException e) { + throw e; + } catch (Exception e) { + throw new ApplicationTechnicalException(e); + } + } + + @Override + public Version getDbVersion() { + Version version = getDbVersion0(); + return version; + } + + private Version getDbVersion0() { + fr.ifremer.adagio.core.dao.technical.Version version; + try { + version = databaseSchemaDao.getSchemaVersion(); + } catch (VersionNotFoundException e) { + if (log.isErrorEnabled()) { + log.error("Could not find db version", e); + } + version = null; + } + return version == null ? null : VersionUtil.valueOf(version.toString()); + } + + @Override + public Version getApplicationVersion() { + fr.ifremer.adagio.core.dao.technical.Version version = databaseSchemaDao.getSchemaVersionIfUpdate(); + return VersionUtil.valueOf(version.toString()); + } + + @Override + public void updateSchema() { + try { + databaseSchemaDao.updateSchema(); + } catch (DatabaseSchemaUpdateException e) { + throw new ApplicationTechnicalException(e.getCause()); + } + } + + @Override + public void sanityDb() { + databaseSanityService.sanity(); + } + + @Override + public void clearAllCaches() { + cacheService.clearAllCaches(); + } +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TechnicalPersistenceServiceImpl.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/TuttiPersistenceServiceLocator.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -61,6 +61,11 @@ TuttiPersistence.class); } + public static TechnicalPersistenceService getTechnicalPersistenceService() { + return instance().getService("technicalPersistenceService", + TechnicalPersistenceService.class); + } + public static ReferentialPersistenceService getReferentialPersistenceService() { return instance().getService("referentialPersistenceService", ReferentialPersistenceService.class); Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchPersistenceHelper.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -27,7 +27,6 @@ import com.google.common.base.Joiner; import com.google.common.base.Preconditions; import com.google.common.collect.Lists; -import com.google.common.collect.Sets; import fr.ifremer.adagio.core.dao.data.batch.Batch; import fr.ifremer.adagio.core.dao.data.batch.CatchBatch; import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; @@ -35,9 +34,7 @@ import fr.ifremer.adagio.core.dao.data.batch.SortingBatchDao; import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationError; import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationException; -import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; -import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; import fr.ifremer.adagio.core.dao.referential.pmfm.Pmfm; import fr.ifremer.tutti.persistence.InvalidBatchModelException; import fr.ifremer.tutti.persistence.entities.TuttiEntity; @@ -52,12 +49,8 @@ import fr.ifremer.tutti.persistence.service.AbstractPersistenceService; import fr.ifremer.tutti.persistence.service.AttachmentPersistenceService; import fr.ifremer.tutti.persistence.service.IndividualObservationBatchPersistenceService; -import fr.ifremer.tutti.persistence.service.MeasurementPersistenceHelper; import fr.ifremer.tutti.persistence.service.ReferentialPersistenceService; import org.apache.commons.collections.CollectionUtils; -import org.apache.commons.logging.Log; -import org.apache.commons.logging.LogFactory; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.dao.DataIntegrityViolationException; import org.springframework.dao.DataRetrievalFailureException; import org.springframework.stereotype.Component; @@ -65,9 +58,7 @@ import javax.annotation.Resource; import java.io.Serializable; import java.text.MessageFormat; -import java.util.Collection; import java.util.List; -import java.util.Set; import static org.nuiton.i18n.I18n.t; @@ -80,9 +71,9 @@ @Component("batchPersistenceHelper") public class BatchPersistenceHelper extends AbstractPersistenceService { - /** Logger. */ - private static final Log log = - LogFactory.getLog(BatchPersistenceHelper.class); +// /** Logger. */ +// private static final Log log = +// LogFactory.getLog(BatchPersistenceHelper.class); @Resource(name = "referentialPersistenceService") protected ReferentialPersistenceService referentialService; @@ -102,9 +93,12 @@ @Resource(name = "scientificCruiseCatchBatchValidator") protected TuttiCatchBatchValidator catchBatchValidator; - @Autowired - protected MeasurementPersistenceHelper measurementPersistenceHelper; +// @Resource(name = "measurementPersistenceHelper") +// protected MeasurementPersistenceHelper measurementPersistenceHelper; + @Resource(name = "batchTreeHelper") + protected BatchTreeHelper batchTreeHelper; + @Override public void init() { super.init(); @@ -225,13 +219,13 @@ catchBatchDao.updateSortingBatch(sortingBatch, parentCatchBatch); } - public SortingMeasurement getInheritedSortingMeasurement(SortingBatch sortingBatch) { - return catchBatchDao.getInheritedSortingMeasurement(sortingBatch, enumeration.PMFM_ID_SORTED_UNSORTED); - } +// public SortingMeasurement getInheritedSortingMeasurement(SortingBatch sortingBatch) { +// return catchBatchDao.getInheritedSortingMeasurement(sortingBatch, enumeration.PMFM_ID_SORTED_UNSORTED); +// } - public QuantificationMeasurement setWeightMeasurementQuantificationMeasurement(Batch batch, Float weightValue) { - return catchBatchDao.setQuantificationMeasurement(batch, enumeration.PMFM_ID_WEIGHT_MEASURED, getRecorderDepartmentId(), weightValue, true); - } +// public QuantificationMeasurement setWeightMeasurementQuantificationMeasurement(Batch batch, Float weightValue) { +// return catchBatchDao.setQuantificationMeasurement(batch, enumeration.PMFM_ID_WEIGHT_MEASURED, getRecorderDepartmentId(), weightValue, true); +// } public List<SortingBatch> getFrequencyChilds(SampleCategoryModel sampleCategoryModel, SortingBatch sortingBatch) { @@ -338,62 +332,66 @@ if (enumeration.QUALITATIVE_VRAC_ID.equals(qualitativeValueId)) { // get vrac / Species / Alive itemized batch - parentBatch = getSortingBatch( - catchBatch, - "Vrac > Species > Alive Itemized", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED); + parentBatch = batchTreeHelper.getSpeciesVracAliveItemizedRootBatch(catchBatch); +// parentBatch = getSortingBatch( +// catchBatch, +// "Vrac > Species > Alive Itemized", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, +// enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED); if (parentBatch == null) { // get vrac batch - SortingBatch vracBatch = getSortingBatch( - catchBatch, - "Vrac", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); + SortingBatch vracBatch = batchTreeHelper.getVracBatch(catchBatch); +// SortingBatch vracBatch = getSortingBatch( +// catchBatch, +// "Vrac", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); if (vracBatch == null) { // create vrac batch - vracBatch = getOrCreateVracBatch(catchBatch, null, null); + vracBatch = batchTreeHelper.getOrCreateVracBatch(catchBatch, null, null); } // get vrac > species batch - SortingBatch vracSpeciesBatch = getSortingBatch( - vracBatch, - "Vrac > Species", - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + SortingBatch vracSpeciesBatch = batchTreeHelper.getSpeciesVracRootBatch(vracBatch); +// SortingBatch vracSpeciesBatch = getSortingBatch( +// vracBatch, +// "Vrac > Species", +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); if (vracSpeciesBatch == null) { // create vrac > species batch - vracSpeciesBatch = getOrCreateSpeciesVracRootBatch(catchBatch, vracBatch, null); + vracSpeciesBatch = batchTreeHelper.getOrCreateSpeciesVracRootBatch(catchBatch, vracBatch, null); } // create vrac > species > Alive itemized batch - parentBatch = getOrCreateSpeciesVracAliveItemizeRootBatch(catchBatch, vracSpeciesBatch); + parentBatch = batchTreeHelper.getOrCreateSpeciesVracAliveItemizedRootBatch(catchBatch, vracSpeciesBatch); } } else if (enumeration.QUALITATIVE_HORS_VRAC_ID.equals(qualitativeValueId)) { // get hors vrac > Species batch - parentBatch = getSortingBatch( - catchBatch, - "Hors vrac > Species", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + parentBatch = batchTreeHelper.getSpeciesHorsVracRootBatch(catchBatch); +// parentBatch = getSortingBatch( +// catchBatch, +// "Hors vrac > Species", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); if (parentBatch == null) { // get (or create) hors vrac batch - SortingBatch horsVracBatch = getOrCreateHorsVracBatch(catchBatch); + SortingBatch horsVracBatch = batchTreeHelper.getOrCreateHorsVracBatch(catchBatch); // create hors vrac > species batch - parentBatch = getOrCreateSpeciesHorsVracRootBatch( + parentBatch = batchTreeHelper.getOrCreateSpeciesHorsVracRootBatch( catchBatch, horsVracBatch); } @@ -441,63 +439,67 @@ if (enumeration.QUALITATIVE_VRAC_ID.equals(qualitativeValueId)) { // Vrac > Benthos > Alive Itemized - parentBatch = getSortingBatch( - catchBatch, - "Vrac > Species > Alive Itemized", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, - enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED); + parentBatch = batchTreeHelper.getBenthosVracAliveItemizedRootBatch(catchBatch); +// parentBatch = getSortingBatch( +// catchBatch, +// "Vrac > Species > Alive Itemized", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, +// enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED); if (parentBatch == null) { // get vrac batch - SortingBatch vracBatch = getSortingBatch( - catchBatch, - "Vrac", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); + SortingBatch vracBatch = batchTreeHelper.getVracBatch(catchBatch); +// SortingBatch vracBatch = getSortingBatch( +// catchBatch, +// "Vrac", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID); if (vracBatch == null) { // create vrac batch - vracBatch = getOrCreateVracBatch(catchBatch, null, null); + vracBatch = batchTreeHelper.getOrCreateVracBatch(catchBatch, null, null); } // get vrac > Benthos batch - SortingBatch vracBenthosBatch = getSortingBatch( - vracBatch, - "Vrac > Benthos", - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + SortingBatch vracBenthosBatch = batchTreeHelper.getBenthosVracRootBatch(vracBatch); +// SortingBatch vracBenthosBatch = getSortingBatch( +// vracBatch, +// "Vrac > Benthos", +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); if (vracBenthosBatch == null) { // create vrac > Benthos batch - vracBenthosBatch = getOrCreateBenthosVracRootBatch(catchBatch, vracBatch, null); + vracBenthosBatch = batchTreeHelper.getOrCreateBenthosVracRootBatch(catchBatch, vracBatch, null); } // create vrac > Benthos > Alive itemized batch - parentBatch = getOrCreateBenthosVracAliveItemizeRootBatch(catchBatch, vracBenthosBatch); + parentBatch = batchTreeHelper.getOrCreateBenthosVracAliveItemizedRootBatch(catchBatch, vracBenthosBatch); } } else if (enumeration.QUALITATIVE_HORS_VRAC_ID.equals(qualitativeValueId)) { // get hors-vrac > Benthos batch - parentBatch = getSortingBatch( - catchBatch, - "Hors vrac > Benthos", - enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, - enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + parentBatch = batchTreeHelper.getBenthosHorsVracRootBatch(catchBatch); +// parentBatch = getSortingBatch( +// catchBatch, +// "Hors vrac > Benthos", +// enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, +// enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); if (parentBatch == null) { // get (or create) hors vrac batch - SortingBatch horsVracBatch = getOrCreateHorsVracBatch(catchBatch); + SortingBatch horsVracBatch = batchTreeHelper.getOrCreateHorsVracBatch(catchBatch); // create hors vrac > Benthos batch - parentBatch = getOrCreateBenthosHorsVracRootBatch( + parentBatch = batchTreeHelper.getOrCreateBenthosHorsVracRootBatch( catchBatch, horsVracBatch); } @@ -512,6 +514,23 @@ target.setParentBatch(parentBatch); } + public void setMarineLitterBatchParents(SortingBatch target, CatchBatch catchBatch) { + + Preconditions.checkNotNull(target); + + SortingBatch parentBatch = batchTreeHelper.getMarineLitterRootBatch(catchBatch); + + if (parentBatch == null) { + + SortingBatch horsVracBatch = batchTreeHelper.getOrCreateHorsVracBatch(catchBatch); + + parentBatch = batchTreeHelper.getOrCreateMarineLitterRootBatch(catchBatch, horsVracBatch, null); + } + + target.setParentBatch(parentBatch); + target.setRootBatch(catchBatch); + } + public Integer convertSampleCategoryValueIntoQualitativeId(Serializable value) { if (value == null) { return null; @@ -526,343 +545,342 @@ return qualitativeValueId; } - public SortingBatch getSortingBatch(Batch source, - String debugMessage, - Integer... ids) { +// public SortingBatch getSortingBatch(Batch source, +// String debugMessage, +// Integer... ids) { +// +// return getSortingBatch(source.getChildBatchs(), debugMessage, ids); +// } - return getSortingBatch(source.getChildBatchs(), debugMessage, ids); - } +// public SortingBatch getSortingBatch(Collection<Batch> childs, +// String debugMessage, +// Integer... ids) { +// +// int nbParams = ids.length / 2; +// +// Object[] params = new Object[nbParams * 3]; +// for (int i = 0; i < nbParams; i++) { +// Integer sortingPmfmId = ids[2 * i]; +// Integer sortingQualitativeValueId = ids[2 * i + 1]; +// params[3 * i] = CatchBatchExtendDao.PMFM_ID; +// params[3 * i + 1] = sortingPmfmId; +// params[3 * i + 2] = sortingQualitativeValueId; +// } +// SortingBatch result = catchBatchDao.getSortingBatch(childs, params); +// if (result != null && debugMessage != null && log.isDebugEnabled()) { +// log.debug("Loaded " + debugMessage + ": " + result.getId()); +// } +// return result; +// } - public SortingBatch getSortingBatch(Collection<Batch> childs, - String debugMessage, - Integer... ids) { +// public SortingBatch getVracBatch(CatchBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_VRAC_ID +// ); +// } - int nbParams = ids.length / 2; +// public SortingBatch getOrCreateVracBatch(CatchBatch batch, +// Float weight, +// Float weightBeforeSampling) { +// return getOrCreate( +// batch, +// batch, +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_VRAC_ID, +// weight, +// weightBeforeSampling, +// (short) 1 +// ); +// } - Object[] params = new Object[nbParams * 3]; - for (int i = 0; i < nbParams; i++) { - Integer sortingPmfmId = ids[2 * i]; - Integer sortingQualitativeValueId = ids[2 * i + 1]; - params[3 * i] = CatchBatchExtendDao.PMFM_ID; - params[3 * i + 1] = sortingPmfmId; - params[3 * i + 2] = sortingQualitativeValueId; - } - SortingBatch result = catchBatchDao.getSortingBatch(childs, params); - if (result != null && debugMessage != null && log.isDebugEnabled()) { - log.debug("Loaded " + debugMessage + ": " + result.getId()); - } - return result; - } +// public SortingBatch getSpeciesVracRootBatch(SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES +// ); +// } - public SortingBatch getVracBatch(CatchBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_VRAC_ID - ); - } +// public SortingBatch getOrCreateSpeciesVracRootBatch(CatchBatch target, +// SortingBatch batch, +// Float totalWeight) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, +// totalWeight, +// (short) 1 +// ); +// } - public SortingBatch getOrCreateVracBatch(CatchBatch batch, - Float weight, - Float weightBeforeSampling) { - return getOrCreate( - batch, - batch, - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_VRAC_ID, - weight, - weightBeforeSampling, - (short) 1 - ); - } +// public SortingBatch getSpeciesVracAliveNotItemizedRootBatch(SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED +// ); +// } - public SortingBatch getSpeciesVracRootBatch(SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES - ); - } +// public SortingBatch getOrCreateSpeciesVracAliveNotItemizedRootBatch(CatchBatch target, +// SortingBatch batch, +// Float totalWeight) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED, +// totalWeight, +// (short) 1 +// ); +// } - public SortingBatch getOrCreateSpeciesVracRootBatch(CatchBatch target, - SortingBatch batch, - Float totalWeight) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - totalWeight, - (short) 1 - ); - } +// public SortingBatch getSpeciesVracInertRootBatch(SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT +// ); +// } - public SortingBatch getSpeciesVracAliveNotItemizeRootBatch(SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED - ); - } +// public SortingBatch getOrCreateSpeciesVracInertRootBatch(CatchBatch target, +// SortingBatch batch, +// Float totalWeight) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT, +// totalWeight, +// (short) 2 +// ); +// } - public SortingBatch getOrCreateSpeciesVracAliveNotItemizeRootBatch(CatchBatch target, - SortingBatch batch, - Float totalWeight) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED, - totalWeight, - (short) 1 - ); - } +// public SortingBatch getSpeciesVracAliveItemizeRootBatch( +// SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED +// ); +// } - public SortingBatch getSpeciesVracInertRootBatch(SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT - ); - } +// public SortingBatch getOrCreateSpeciesVracAliveItemizedRootBatch(CatchBatch target, +// SortingBatch batch) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED, +// null, +// (short) 3 +// ); +// } - public SortingBatch getOrCreateSpeciesVracInertRootBatch(CatchBatch target, - SortingBatch batch, - Float totalWeight) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT, - totalWeight, - (short) 2 - ); - } +// public SortingBatch getBenthosVracRootBatch( +// SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS +// ); +// } - public SortingBatch getSpeciesVracAliveItemizeRootBatch( - SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED - ); - } +// public SortingBatch getOrCreateBenthosVracRootBatch(CatchBatch target, +// SortingBatch batch, +// Float totalWeight) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, +// totalWeight, +// (short) 2 +// ); +// } - public SortingBatch getOrCreateSpeciesVracAliveItemizeRootBatch(CatchBatch target, - SortingBatch batch) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED, - null, - (short) 3 - ); - } +// public SortingBatch getBenthosVracAliveNotItemizedRootBatch( +// SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED +// ); +// } - public SortingBatch getBenthosVracRootBatch( - SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS - ); - } +// public SortingBatch getOrCreateBenthosVracAliveNotItemizedRootBatch(CatchBatch target, +// SortingBatch batch, +// Float totalWeight) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED, +// totalWeight, +// (short) 1 +// ); +// } - public SortingBatch getOrCreateBenthosVracRootBatch(CatchBatch target, - SortingBatch batch, - Float totalWeight) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, - totalWeight, - (short) 2 - ); - } +// public SortingBatch getBenthosVracInertRootBatch(SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT +// ); +// } - public SortingBatch getBenthosVracAliveNotItemizeRootBatch( - SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED - ); - } +// public SortingBatch getOrCreateBenthosVracInertRootBatch(fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, +// SortingBatch batch, +// Float totalWeight) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT, +// totalWeight, +// (short) 2 +// ); +// } - public SortingBatch getOrCreateBenthosVracAliveNotItemizeRootBatch(CatchBatch target, - SortingBatch batch, - Float totalWeight) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED, - totalWeight, - (short) 1 - ); - } +// public SortingBatch getBenthosVracAliveItemizeRootBatch(SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED +// ); +// } - public SortingBatch getBenthosVracInertRootBatch(SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT - ); - } +// public SortingBatch getOrCreateBenthosVracAliveItemizedRootBatch(CatchBatch target, +// SortingBatch batch) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE_2, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED, +// null, +// (short) 3 +// ); +// } - public SortingBatch getOrCreateBenthosVracInertRootBatch(fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, - SortingBatch batch, - Float totalWeight) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT, - totalWeight, - (short) 2 - ); - } +// public SortingBatch getHorsVracBatch(CatchBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_HORS_VRAC_ID +// ); +// } - public SortingBatch getBenthosVracAliveItemizeRootBatch(SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED - ); - } +// public SortingBatch getOrCreateHorsVracBatch(CatchBatch batch) { +// return getOrCreate( +// batch, +// batch, +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_HORS_VRAC_ID, +// null, +// (short) 2 +// ); +// } - public SortingBatch getOrCreateBenthosVracAliveItemizeRootBatch(CatchBatch target, - SortingBatch batch) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED, - null, - (short) 3 - ); - } +// public SortingBatch getSpeciesHorsVracRootBatch(SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES +// ); +// } - public SortingBatch getHorsVracBatch(CatchBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_HORS_VRAC_ID - ); - } +// public SortingBatch getOrCreateSpeciesHorsVracRootBatch(CatchBatch target, +// SortingBatch batch) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, +// null, +// (short) 1 +// ); +// } - public SortingBatch getOrCreateHorsVracBatch(CatchBatch batch) { - return getOrCreate( - batch, - batch, - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_HORS_VRAC_ID, - null, - (short) 2 - ); - } +// public SortingBatch getBenthosHorsVracRootBatch(SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS +// ); +// } - public SortingBatch getSpeciesHorsVracRootBatch(SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES - ); - } +// public SortingBatch getOrCreateBenthosHorsVracRootBatch(CatchBatch target, +// SortingBatch batch) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, +// null, +// (short) 2 +// ); +// } - public SortingBatch getOrCreateSpeciesHorsVracRootBatch(CatchBatch target, - SortingBatch batch) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, - null, - (short) 1 - ); - } +// public SortingBatch getMarineLitterRootBatch(SortingBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER +// ); +// } - public SortingBatch getBenthosHorsVracRootBatch(SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS - ); - } +// public SortingBatch getOrCreateMarineLitterRootBatch(CatchBatch target, +// SortingBatch batch, +// Float totalWeight) { +// return getOrCreate( +// target, +// batch, +// enumeration.PMFM_ID_SORTING_TYPE, +// enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER, +// totalWeight, +// (short) 3 +// ); +// } - public SortingBatch getOrCreateBenthosHorsVracRootBatch(CatchBatch target, - SortingBatch batch) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, - null, - (short) 2 - ); - } +// public SortingBatch getRejectedBatch(CatchBatch batch) { +// return get( +// batch, +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_UNSORTED_ID +// ); +// } - public SortingBatch getMarineLitterRootBatch(SortingBatch batch) { - return get( - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER - ); - } +// public SortingBatch getOrCreateRejectedBatch(CatchBatch batch, +// Float weight) { +// +// return getOrCreate( +// batch, +// batch, +// enumeration.PMFM_ID_SORTED_UNSORTED, +// enumeration.QUALITATIVE_UNSORTED_ID, +// weight, +// (short) 3 +// ); +// } - public SortingBatch getOrCreateMarineLitterRootBatch(CatchBatch target, - SortingBatch batch, - Float totalWeight) { - return getOrCreate( - target, - batch, - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER, - totalWeight, - (short) 3 - ); - } +// public SortingMeasurement setSortingMeasurement( +// SortingBatch sortingBatch, +// Integer pmfmId, +// Serializable value) { +// Preconditions.checkNotNull(pmfmId); +// Preconditions.checkNotNull(value); +// +// Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); +// SortingMeasurement sortingMeasurement = catchBatchDao.getSortingMeasurement( +// sortingBatch, pmfmId, getRecorderDepartmentId(), true); +// measurementPersistenceHelper.setMeasurement(sortingMeasurement, +// caracteristic, +// value); +// return sortingMeasurement; +// } - public SortingBatch getRejectedBatch(CatchBatch batch) { - - return get( - batch, - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_UNSORTED_ID - ); - } - - public SortingBatch getOrCreateRejectedBatch(CatchBatch batch, - Float weight) { - - return getOrCreate( - batch, - batch, - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_UNSORTED_ID, - weight, - (short) 3 - ); - } - - public SortingMeasurement setSortingMeasurement( - SortingBatch sortingBatch, - Integer pmfmId, - Serializable value) { - Preconditions.checkNotNull(pmfmId); - Preconditions.checkNotNull(value); - - Caracteristic caracteristic = referentialService.getCaracteristic(pmfmId); - SortingMeasurement sortingMeasurement = catchBatchDao.getSortingMeasurement( - sortingBatch, pmfmId, getRecorderDepartmentId(), true); - measurementPersistenceHelper.setMeasurement(sortingMeasurement, - caracteristic, - value); - return sortingMeasurement; - } - public Serializable getSampleCategoryQualitative(Integer pmfmId, Float numericalvalue, String alphanumericalValue, @@ -927,124 +945,124 @@ return result; } - protected SortingBatch getOrCreate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, - Batch batch, - Integer pmfmId, - Integer pmfmValue, - Float totalWeight, - short rankOrder) { - return getOrCreate( - target, - batch, - pmfmId, - pmfmValue, - totalWeight, - null, - rankOrder - ); - } +// protected SortingBatch getOrCreate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, +// Batch batch, +// Integer pmfmId, +// Integer pmfmValue, +// Float totalWeight, +// short rankOrder) { +// return getOrCreate( +// target, +// batch, +// pmfmId, +// pmfmValue, +// totalWeight, +// null, +// rankOrder +// ); +// } - protected SortingBatch getOrCreate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, - Batch parentBatch, - Integer sortingPmfmId, - Integer sortingQualitativeValueId, - Float weight, - Float weightBeforeSampling, - short rankOrder) { - SortingBatch result = get( - parentBatch, - sortingPmfmId, - sortingQualitativeValueId); +// protected SortingBatch getOrCreate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, +// Batch parentBatch, +// Integer sortingPmfmId, +// Integer sortingQualitativeValueId, +// Float weight, +// Float weightBeforeSampling, +// short rankOrder) { +// SortingBatch result = batchTreeHelper.get( +// parentBatch, +// sortingPmfmId, +// sortingQualitativeValueId); +// +// if (result == null) { +// +// result = SortingBatch.Factory.newInstance(); +// if (parentBatch.getChildBatchs() == null) { +// parentBatch.setChildBatchs(Sets.<Batch>newHashSet()); +// } +// parentBatch.getChildBatchs().add(result); +// +// Collection<SortingMeasurement> sortingMeasurements = result.getSortingMeasurements(); +// +// // Create lists to store all updates, then remove not updated items +// Set<SortingMeasurement> notChangedSortingMeasurements = Sets.newHashSet(); +// if (sortingMeasurements != null) { +// notChangedSortingMeasurements.addAll(sortingMeasurements); +// } +// +// // Some mandatory properties : +// QualityFlagImpl qualityFlag = load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED); +// result.setQualityFlag(qualityFlag); +// result.setRootBatch(rootBatch); +// result.setParentBatch(parentBatch); +// result.setExhaustiveInventory(true); +// +// // No taxon or taxon group +// result.setReferenceTaxon(null); +// result.setTaxonGroup(null); +// +// result.setRankOrder(rankOrder); +// +// // Sorting measurement +// if (sortingPmfmId != null && sortingQualitativeValueId != null) { +// SortingMeasurement sm = setSortingMeasurement( +// result, +// sortingPmfmId, +// sortingQualitativeValueId); +// notChangedSortingMeasurements.remove(sm); +// } +// // Removed not changed sorting measurements +// if (sortingMeasurements != null) { +// sortingMeasurements.removeAll(notChangedSortingMeasurements); +// } +// +// catchBatchDao.createSortingBatch(result, rootBatch); +// } +// +// Collection<QuantificationMeasurement> quantificationMeasurements = result.getQuantificationMeasurements(); +// Set<QuantificationMeasurement> notChangedQuantificationMeasurements = Sets.newHashSet(); +// if (quantificationMeasurements != null) { +// notChangedQuantificationMeasurements.addAll(quantificationMeasurements); +// } +// +// // Sampling Ratio +// if (weightBeforeSampling == null || weight == null) { +// result.setSamplingRatio(null); +// result.setSamplingRatioText(null); +// } else { +// String samplingRatioText = weight + "/" + weightBeforeSampling; +// samplingRatioText = samplingRatioText.replaceAll(",", "."); +// result.setSamplingRatioText(samplingRatioText); +// result.setSamplingRatio(weight / weightBeforeSampling); +// } +// +// // Weight +// if (weightBeforeSampling != null || weight != null) { +// Float batchReferenceWeight = weight; +// if (batchReferenceWeight == null) { +// batchReferenceWeight = weightBeforeSampling; +// } +// QuantificationMeasurement quantificationMeasurement = setWeightMeasurementQuantificationMeasurement( +// result, +// batchReferenceWeight); +// notChangedQuantificationMeasurements.remove(quantificationMeasurement); +// } +// // Removed not changed quantification measurements +// if (quantificationMeasurements != null) { +// quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); +// } +// +// return result; +// } - if (result == null) { - - result = SortingBatch.Factory.newInstance(); - if (parentBatch.getChildBatchs() == null) { - parentBatch.setChildBatchs(Sets.<Batch>newHashSet()); - } - parentBatch.getChildBatchs().add(result); - - Collection<SortingMeasurement> sortingMeasurements = result.getSortingMeasurements(); - - // Create lists to store all updates, then remove not updated items - Set<SortingMeasurement> notChangedSortingMeasurements = Sets.newHashSet(); - if (sortingMeasurements != null) { - notChangedSortingMeasurements.addAll(sortingMeasurements); - } - - // Some mandatory properties : - QualityFlagImpl qualityFlag = load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED); - result.setQualityFlag(qualityFlag); - result.setRootBatch(rootBatch); - result.setParentBatch(parentBatch); - result.setExhaustiveInventory(true); - - // No taxon or taxon group - result.setReferenceTaxon(null); - result.setTaxonGroup(null); - - result.setRankOrder(rankOrder); - - // Sorting measurement - if (sortingPmfmId != null && sortingQualitativeValueId != null) { - SortingMeasurement sm = setSortingMeasurement( - result, - sortingPmfmId, - sortingQualitativeValueId); - notChangedSortingMeasurements.remove(sm); - } - // Removed not changed sorting measurements - if (sortingMeasurements != null) { - sortingMeasurements.removeAll(notChangedSortingMeasurements); - } - - catchBatchDao.createSortingBatch(result, rootBatch); - } - - Collection<QuantificationMeasurement> quantificationMeasurements = result.getQuantificationMeasurements(); - Set<QuantificationMeasurement> notChangedQuantificationMeasurements = Sets.newHashSet(); - if (quantificationMeasurements != null) { - notChangedQuantificationMeasurements.addAll(quantificationMeasurements); - } - - // Sampling Ratio - if (weightBeforeSampling == null || weight == null) { - result.setSamplingRatio(null); - result.setSamplingRatioText(null); - } else { - String samplingRatioText = weight + "/" + weightBeforeSampling; - samplingRatioText = samplingRatioText.replaceAll(",", "."); - result.setSamplingRatioText(samplingRatioText); - result.setSamplingRatio(weight / weightBeforeSampling); - } - - // Weight - if (weightBeforeSampling != null || weight != null) { - Float batchReferenceWeight = weight; - if (batchReferenceWeight == null) { - batchReferenceWeight = weightBeforeSampling; - } - QuantificationMeasurement quantificationMeasurement = setWeightMeasurementQuantificationMeasurement( - result, - batchReferenceWeight); - notChangedQuantificationMeasurements.remove(quantificationMeasurement); - } - // Removed not changed quantification measurements - if (quantificationMeasurements != null) { - quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); - } - - return result; - } - - protected SortingBatch get(Batch parentBatch, - Integer sortingPmfmId, - Integer sortingQualitativeValueId) { - SortingBatch result = getSortingBatch( - parentBatch, - null, - sortingPmfmId, - sortingQualitativeValueId); - return result; - } +// protected SortingBatch get(Batch parentBatch, +// Integer sortingPmfmId, +// Integer sortingQualitativeValueId) { +// SortingBatch result = getSortingBatch( +// parentBatch, +// null, +// sortingPmfmId, +// sortingQualitativeValueId); +// return result; +// } } Added: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchTreeHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchTreeHelper.java (rev 0) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchTreeHelper.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -0,0 +1,693 @@ +package fr.ifremer.tutti.persistence.service.batch; + +import com.google.common.base.Joiner; +import com.google.common.collect.Sets; +import fr.ifremer.adagio.core.dao.data.batch.Batch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatch; +import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; +import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; +import fr.ifremer.adagio.core.dao.data.measure.QuantificationMeasurement; +import fr.ifremer.adagio.core.dao.data.measure.SortingMeasurement; +import fr.ifremer.adagio.core.dao.referential.QualityFlagImpl; +import fr.ifremer.adagio.core.dao.referential.pmfm.Pmfm; +import fr.ifremer.adagio.core.dao.referential.taxon.ReferenceTaxon; +import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; +import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValues; +import fr.ifremer.tutti.persistence.entities.referential.Species; +import fr.ifremer.tutti.persistence.service.AbstractPersistenceService; +import fr.ifremer.tutti.persistence.service.MeasurementPersistenceHelper; +import fr.ifremer.tutti.persistence.service.ReferentialPersistenceService; +import org.apache.commons.lang3.StringUtils; +import org.apache.commons.lang3.builder.ToStringBuilder; +import org.apache.commons.lang3.builder.ToStringStyle; +import org.apache.commons.logging.Log; +import org.apache.commons.logging.LogFactory; +import org.springframework.stereotype.Component; + +import javax.annotation.Resource; +import java.util.ArrayList; +import java.util.Collection; +import java.util.Collections; +import java.util.Comparator; +import java.util.List; +import java.util.Set; + +/** + * Helper to build or navigauet into the batch tree. + * + * Created on 4/20/14. + * + * @author Tony Chemit <chemit(a)codelutin.com> + * @since 3.5 + */ +@Component("batchTreeHelper") +public class BatchTreeHelper extends AbstractPersistenceService { + + /** Logger. */ + private static final Log log = LogFactory.getLog(BatchTreeHelper.class); + + @Resource(name = "referentialPersistenceService") + protected ReferentialPersistenceService referentialService; + + @Resource(name = "measurementPersistenceHelper") + protected MeasurementPersistenceHelper measurementPersistenceHelper; + + @Resource(name = "catchBatchDao") + protected CatchBatchExtendDao catchBatchDao; + + //------------------------------------------------------------------------// + //-- Get CatchBatch navigation methods --// + //------------------------------------------------------------------------// + + public SortingBatch getSpeciesVracAliveItemizedRootBatch(CatchBatch batch) { + return getSortingBatch( + batch, + "Vrac > Species > Alive Itemized", + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED + ); + } + + public SortingBatch getBenthosVracAliveItemizedRootBatch(CatchBatch batch) { + return getSortingBatch( + batch, + "Vrac > Benthos > Alive itemized", + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_VRAC_ID, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, + enumeration.PMFM_ID_SORTING_TYPE_2, enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED + ); + } + + public SortingBatch getSpeciesHorsVracRootBatch(CatchBatch batch) { + return getSortingBatch( + batch, + "Hors Vrac > Species", + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES + ); + } + + public SortingBatch getBenthosHorsVracRootBatch(CatchBatch batch) { + return getSortingBatch( + batch, + "Hors Vrac > Benthos", + enumeration.PMFM_ID_SORTED_UNSORTED, enumeration.QUALITATIVE_HORS_VRAC_ID, + enumeration.PMFM_ID_SORTING_TYPE, enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS + ); + } + + public SortingBatch getMarineLitterRootBatch(CatchBatch batch) { + return getSortingBatch( + batch, + "Hors Vrac > Marine Litter", + enumeration.PMFM_ID_SORTED_UNSORTED, + enumeration.QUALITATIVE_HORS_VRAC_ID, + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER + ); + } + + public SortingBatch getVracBatch(CatchBatch batch) { + return getSortingBatch( + batch, + "Vrac", + enumeration.PMFM_ID_SORTED_UNSORTED, + enumeration.QUALITATIVE_VRAC_ID + ); + } + + public SortingBatch getHorsVracBatch(CatchBatch batch) { + return getSortingBatch( + batch, + "Hors Vrac", + enumeration.PMFM_ID_SORTED_UNSORTED, + enumeration.QUALITATIVE_HORS_VRAC_ID + ); + } + + public SortingBatch getRejectedBatch(CatchBatch batch) { + return getSortingBatch( + batch, + "Unsorted", + enumeration.PMFM_ID_SORTED_UNSORTED, + enumeration.QUALITATIVE_UNSORTED_ID + ); + } + + //------------------------------------------------------------------------// + //-- Get SortingBatch navigation methods --// + //------------------------------------------------------------------------// + + public SortingBatch getSpeciesVracRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Vrac > Species", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES + ); + } + + public SortingBatch getBenthosVracRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Vrac > Benthos", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS + ); + } + + public SortingBatch getSpeciesVracAliveNotItemizedRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Vrac > Species" + " > Alive not itemized", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED + ); + } + + public SortingBatch getBenthosVracAliveNotItemizedRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Vrac > Benthos" + " > Alive not itemized", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED + ); + } + + public SortingBatch getSpeciesVracInertRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Vrac > Species" + " > Inert (not alive)", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT + ); + } + + public SortingBatch getBenthosVracInertRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Vrac > Benthos" + " > Inert (not alive)", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT + ); + } + + public SortingBatch getSpeciesVracAliveItemizedRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Vrac > Species" + " > Alive itemized", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED + ); + } + + public SortingBatch getBenthosVracAliveItemizedRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Vrac > Benthos" + " > Alive itemized", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED + ); + } + + public SortingBatch getSpeciesHorsVracRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Hors Vrac > Species", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES + ); + } + + public SortingBatch getBenthosHorsVracRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Hors Vrac > Benthos", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS + ); + } + + public SortingBatch getMarineLitterRootBatch(SortingBatch batch) { + return getSortingBatch( + batch, + "Hors Vrac > MarineLitter", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER + ); + } + + //------------------------------------------------------------------------// + //-- getOrCreate methods --// + //------------------------------------------------------------------------// + + public SortingBatch getOrCreateVracBatch(CatchBatch batch, + Float weight, + Float weightBeforeSampling) { + return getOrCreate( + batch, + batch, + "Vrac", + enumeration.PMFM_ID_SORTED_UNSORTED, + enumeration.QUALITATIVE_VRAC_ID, + weight, + weightBeforeSampling, + (short) 1 + ); + } + + public SortingBatch getOrCreateSpeciesVracRootBatch(CatchBatch target, + SortingBatch batch, + Float totalWeight) { + return getOrCreate( + target, + batch, + "Vrac > Species", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + totalWeight, + (short) 1 + ); + } + + public SortingBatch getOrCreateSpeciesVracAliveNotItemizedRootBatch(CatchBatch target, + SortingBatch batch, + Float totalWeight) { + return getOrCreate( + target, + batch, + "Vrac > Species > Alive Not Itemized", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED, + totalWeight, + (short) 1 + ); + } + + public SortingBatch getOrCreateSpeciesVracInertRootBatch(CatchBatch target, + SortingBatch batch, + Float totalWeight) { + return getOrCreate( + target, + batch, + "Vrac > Species > Inert", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT, + totalWeight, + (short) 2 + ); + } + + public SortingBatch getOrCreateSpeciesVracAliveItemizedRootBatch(CatchBatch target, + SortingBatch batch) { + return getOrCreate( + target, + batch, + "Vrac > Benthos > Alive Itemized", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED, + null, + (short) 3 + ); + } + + public SortingBatch getOrCreateBenthosVracRootBatch(CatchBatch target, + SortingBatch batch, + Float totalWeight) { + return getOrCreate( + target, + batch, + "Vrac > Benthos", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, + totalWeight, + (short) 2 + ); + } + + public SortingBatch getOrCreateBenthosVracAliveNotItemizedRootBatch(CatchBatch target, + SortingBatch batch, + Float totalWeight) { + return getOrCreate( + target, + batch, + "Vrac > Benthos > Alive Not itemized", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED, + totalWeight, + (short) 1 + ); + } + + public SortingBatch getOrCreateBenthosVracInertRootBatch(fr.ifremer.adagio.core.dao.data.batch.CatchBatch target, + SortingBatch batch, + Float totalWeight) { + return getOrCreate( + target, + batch, + "Vrac > Benthos > Inert", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT, + totalWeight, + (short) 2 + ); + } + + public SortingBatch getOrCreateBenthosVracAliveItemizedRootBatch(CatchBatch target, + SortingBatch batch) { + return getOrCreate( + target, + batch, + "Vrac > Benthos > Alive Itemized", + enumeration.PMFM_ID_SORTING_TYPE_2, + enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED, + null, + (short) 3 + ); + } + + public SortingBatch getOrCreateHorsVracBatch(CatchBatch batch) { + return getOrCreate( + batch, + batch, + "Hors Vrac", + enumeration.PMFM_ID_SORTED_UNSORTED, + enumeration.QUALITATIVE_HORS_VRAC_ID, + null, + (short) 2 + ); + } + + public SortingBatch getOrCreateSpeciesHorsVracRootBatch(CatchBatch target, + SortingBatch batch) { + return getOrCreate( + target, + batch, + "Hors Vrac > Species", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES, + null, + (short) 1 + ); + } + + public SortingBatch getOrCreateBenthosHorsVracRootBatch(CatchBatch target, + SortingBatch batch) { + return getOrCreate( + target, + batch, + "Hors Vrac > Benthos", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS, + null, + (short) 2 + ); + } + + public SortingBatch getOrCreateMarineLitterRootBatch(CatchBatch target, + SortingBatch batch, + Float totalWeight) { + return getOrCreate( + target, + batch, + "Hors Vrac > Marine Litter", + enumeration.PMFM_ID_SORTING_TYPE, + enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER, + totalWeight, + (short) 3 + ); + } + + public SortingBatch getOrCreateRejectedBatch(CatchBatch batch, + Float weight) { + + return getOrCreate( + batch, + batch, + "Unsorted", + enumeration.PMFM_ID_SORTED_UNSORTED, + enumeration.QUALITATIVE_UNSORTED_ID, + weight, + (short) 3 + ); + } + + //------------------------------------------------------------------------// + //-- Internal methods --// + //------------------------------------------------------------------------// + + protected SortingBatch get(Batch parentBatch, + Integer sortingPmfmId, + Integer sortingQualitativeValueId) { + SortingBatch result = getSortingBatch( + parentBatch, + null, + sortingPmfmId, + sortingQualitativeValueId); + return result; + } + + protected SortingBatch getSortingBatch(Batch source, + String debugMessage, + Integer... ids) { + + return getSortingBatch(source.getChildBatchs(), debugMessage, ids); + } + + protected SortingBatch getSortingBatch(Collection<Batch> childs, + String debugMessage, + Integer... ids) { + + int nbParams = ids.length / 2; + + Object[] params = new Object[nbParams * 3]; + for (int i = 0; i < nbParams; i++) { + Integer sortingPmfmId = ids[2 * i]; + Integer sortingQualitativeValueId = ids[2 * i + 1]; + params[3 * i] = CatchBatchExtendDao.PMFM_ID; + params[3 * i + 1] = sortingPmfmId; + params[3 * i + 2] = sortingQualitativeValueId; + } + SortingBatch result = catchBatchDao.getSortingBatch(childs, params); + if (result != null && debugMessage != null && log.isDebugEnabled()) { + log.debug("Loaded " + debugMessage + ": " + result.getId()); + } + return result; + } + + protected SortingBatch getOrCreate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, + Batch batch, + String debugMessage, + Integer sortingPmfmId, + Integer sortingQualitativeValueId, + Float totalWeight, + short rankOrder) { + return getOrCreate( + rootBatch, + batch, + debugMessage, + sortingPmfmId, + sortingQualitativeValueId, + totalWeight, + null, + rankOrder + ); + } + + protected SortingBatch getOrCreate(fr.ifremer.adagio.core.dao.data.batch.CatchBatch rootBatch, + Batch batch, + String debugMessage, + Integer sortingPmfmId, + Integer sortingQualitativeValueId, + Float weight, + Float weightBeforeSampling, + short rankOrder) { + SortingBatch result = getSortingBatch( + batch, + debugMessage, + sortingPmfmId, + sortingQualitativeValueId); + + if (result == null) { + + result = SortingBatch.Factory.newInstance(); + if (batch.getChildBatchs() == null) { + batch.setChildBatchs(Sets.<Batch>newHashSet()); + } + batch.getChildBatchs().add(result); + + Collection<SortingMeasurement> sortingMeasurements = result.getSortingMeasurements(); + + // Create lists to store all updates, then remove not updated items + Set<SortingMeasurement> notChangedSortingMeasurements = Sets.newHashSet(); + if (sortingMeasurements != null) { + notChangedSortingMeasurements.addAll(sortingMeasurements); + } + + // Some mandatory properties : + QualityFlagImpl qualityFlag = load(QualityFlagImpl.class, enumeration.QUALITY_FLAG_CODE_NOT_QUALIFIED); + result.setQualityFlag(qualityFlag); + result.setRootBatch(rootBatch); + result.setParentBatch(batch); + result.setExhaustiveInventory(true); + + // No taxon or taxon group + result.setReferenceTaxon(null); + result.setTaxonGroup(null); + + result.setRankOrder(rankOrder); + + // Sorting measurement + if (sortingPmfmId != null && sortingQualitativeValueId != null) { + SortingMeasurement sm = measurementPersistenceHelper.setSortingMeasurement( + result, + sortingPmfmId, + sortingQualitativeValueId); + notChangedSortingMeasurements.remove(sm); + } + // Removed not changed sorting measurements + if (sortingMeasurements != null) { + sortingMeasurements.removeAll(notChangedSortingMeasurements); + } + + catchBatchDao.createSortingBatch(result, rootBatch); + } + + Collection<QuantificationMeasurement> quantificationMeasurements = result.getQuantificationMeasurements(); + Set<QuantificationMeasurement> notChangedQuantificationMeasurements = Sets.newHashSet(); + if (quantificationMeasurements != null) { + notChangedQuantificationMeasurements.addAll(quantificationMeasurements); + } + + // Sampling Ratio + if (weightBeforeSampling == null || weight == null) { + result.setSamplingRatio(null); + result.setSamplingRatioText(null); + } else { + String samplingRatioText = weight + "/" + weightBeforeSampling; + samplingRatioText = samplingRatioText.replaceAll(",", "."); + result.setSamplingRatioText(samplingRatioText); + result.setSamplingRatio(weight / weightBeforeSampling); + } + + // Weight + if (weightBeforeSampling != null || weight != null) { + Float batchReferenceWeight = weight; + if (batchReferenceWeight == null) { + batchReferenceWeight = weightBeforeSampling; + } + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.setWeightMeasurementQuantificationMeasurement( + result, + batchReferenceWeight); + notChangedQuantificationMeasurements.remove(quantificationMeasurement); + } + // Removed not changed quantification measurements + if (quantificationMeasurements != null) { + quantificationMeasurements.removeAll(notChangedQuantificationMeasurements); + } + + return result; + } + + //------------------------------------------------------------------------// + //-- Debug methods --// + //------------------------------------------------------------------------// + + public void displayCatchBatch(CatchBatch result) { + StringBuilder sb = new StringBuilder(); + displayBatch(result, 0, sb); + if (log.isDebugEnabled()) { + log.debug(sb.toString()); + } + } + + final Comparator<Batch> batchComparator = new Comparator<Batch>() { + @Override + public int compare(Batch b1, Batch b2) { + return (b1.getRankOrder() == null) ? 0 : b1.getRankOrder().compareTo(b2.getRankOrder()); + } + }; + + private void displayBatch(Batch batch, int level, StringBuilder sb) { + + ToStringBuilder builder = new ToStringBuilder(batch, ToStringStyle.MULTI_LINE_STYLE); + builder.append("id", batch.getId()); + if (batch.getParentBatch() != null) { + builder.append("parentId", batch.getParentBatch().getId()); + } + builder.append("rankOrder", batch.getRankOrder()); + builder.append("level", level); + if (batch.getWeight() != null) { + builder.append("weight", batch.getWeight()); + } + if (batch.getWeightBeforeSampling() != null) { + builder.append("weightBeforeSampling", batch.getWeightBeforeSampling()); + } +// builder.append("qualityFlag", batch.getQualityFlag().getName()); + if (batch instanceof SortingBatch) { + SortingBatch sortingBatch = (SortingBatch) batch; + if (sortingBatch.getSamplingRatio() != null) { + builder.append("samplingRatio", sortingBatch.getSamplingRatio()); + } + if (sortingBatch.getSamplingRatioText() != null) { + builder.append("samplingRatioText", sortingBatch.getSamplingRatioText()); + } + if (sortingBatch.getReferenceTaxon() != null) { + ReferenceTaxon referenceTaxon = sortingBatch.getReferenceTaxon(); + Species speciesByReferenceTaxonId = referentialService.getSpeciesByReferenceTaxonId(referenceTaxon.getId()); + builder.append("referenceTaxon", speciesByReferenceTaxonId.getName()); + } + if (sortingBatch.getSortingMeasurements() != null) { + for (SortingMeasurement sortingMeasurement : sortingBatch.getSortingMeasurements()) { + Caracteristic sortingMeasurementPmfm = getPmfm(sortingMeasurement.getPmfm()); + builder.append("sortingMeasurement.pmfm", sortingMeasurementPmfm.getParameterName() + " (" + sortingMeasurementPmfm.getId() + ")"); + if (sortingMeasurement.getQualitativeValue() != null) { + CaracteristicQualitativeValue caracteristicQualitativeValue = CaracteristicQualitativeValues.getCaracteristicQualitativeValue(sortingMeasurementPmfm, sortingMeasurement.getQualitativeValue().getId()); + if (caracteristicQualitativeValue == null && sortingMeasurement.getQualitativeValue().getId() == 2146) { + builder.append("sortingMeasurement.qualitativeValue", "Unsorted"); + } else { + builder.append("sortingMeasurement.qualitativeValue", caracteristicQualitativeValue.getName() + " (" + caracteristicQualitativeValue.getId() + ")"); + } + } + if (sortingMeasurement.getNumericalValue() != null) { + builder.append("sortingMeasurement.numericalValue", sortingMeasurement.getNumericalValue()); + } + } + } + } + QuantificationMeasurement quantificationMeasurement = measurementPersistenceHelper.getWeightMeasurementQuantificationMeasurement(batch); + if (quantificationMeasurement != null) { + + builder.append("quantificationMeasurement.isReferenceQuantification", quantificationMeasurement.getIsReferenceQuantification()); + + Caracteristic quantificationMeasurementPmfm = getPmfm(quantificationMeasurement.getPmfm()); + builder.append("quantificationMeasurement.pmfm", quantificationMeasurementPmfm.getParameterName() + " (" + quantificationMeasurementPmfm.getId() + ")"); + + if (quantificationMeasurement.getQualitativeValue() != null) { + CaracteristicQualitativeValue caracteristicQualitativeValue = CaracteristicQualitativeValues.getCaracteristicQualitativeValue(quantificationMeasurementPmfm, quantificationMeasurement.getQualitativeValue().getId()); + builder.append("quantificationMeasurement.qualitativeValue", caracteristicQualitativeValue.getName() + " (" + caracteristicQualitativeValue.getId() + ")"); + } + if (quantificationMeasurement.getNumericalValue() != null) { + builder.append("quantificationMeasurement.numericalValue", quantificationMeasurement.getNumericalValue()); + } + } + String prefix = "\n" + StringUtils.leftPad("", 2 * level); + String batchStr = Joiner.on(prefix).join(builder.build().split("\n")); + sb.append(prefix).append(batchStr); + Collection<Batch> childBatchs = batch.getChildBatchs(); + if (childBatchs != null) { + List<Batch> childBatchList = new ArrayList<>(childBatchs); + Collections.sort(childBatchList, batchComparator); + for (Batch childBatch : childBatchList) { + displayBatch(childBatch, level + 1, sb); + } + } + } + + protected Caracteristic getPmfm(Pmfm pmfm) { + Caracteristic caracteristic = referentialService.getCaracteristic(pmfm.getId()); + return caracteristic; + } +} Property changes on: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/BatchTreeHelper.java ___________________________________________________________________ Added: svn:keywords + Author Date Id Revision Added: svn:eol-style + native Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/ScientificCruiseCatchBatchValidator.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/ScientificCruiseCatchBatchValidator.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/batch/ScientificCruiseCatchBatchValidator.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -25,9 +25,7 @@ */ import com.google.common.collect.Lists; -import fr.ifremer.adagio.core.dao.data.batch.Batch; import fr.ifremer.adagio.core.dao.data.batch.CatchBatch; -import fr.ifremer.adagio.core.dao.data.batch.CatchBatchExtendDao; import fr.ifremer.adagio.core.dao.data.batch.SortingBatch; import fr.ifremer.adagio.core.dao.data.batch.validator.CatchBatchValidationError; import fr.ifremer.tutti.persistence.entities.data.BatchContainer; @@ -36,19 +34,16 @@ import fr.ifremer.tutti.persistence.entities.data.SampleCategoryModelEntry; import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; -import fr.ifremer.tutti.persistence.service.CatchBatchPersistenceService; -import fr.ifremer.tutti.persistence.service.TuttiEnumerationFile; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Component; -import java.util.Collection; +import javax.annotation.Resource; import java.util.List; import java.util.Map; -import static org.nuiton.i18n.I18n.t; import static org.nuiton.i18n.I18n.n; +import static org.nuiton.i18n.I18n.t; @Component(value = "scientificCruiseCatchBatchValidator") public class ScientificCruiseCatchBatchValidator implements TuttiCatchBatchValidator { @@ -57,18 +52,9 @@ private static final Log log = LogFactory.getLog(ScientificCruiseCatchBatchValidator.class); - @Autowired - protected CatchBatchPersistenceService batchService; + @Resource(name = "batchTreeHelper") + protected BatchTreeHelper batchTreeHelper; - @Autowired - protected CatchBatchExtendDao catchBatchDao; - - @Autowired - protected TuttiEnumerationFile enumeration; - - @Autowired - protected BatchPersistenceHelper batchHelper; - // -----------------------------------------------------------------------// // -- CatchBatchValidator methods --// // -----------------------------------------------------------------------// @@ -82,7 +68,7 @@ @Override public List<CatchBatchValidationError> validate(CatchBatch catchBatch) { List<CatchBatchValidationError> errors = Lists.newArrayList(); - validateCatchBatch(catchBatch.getChildBatchs(), errors); + validateCatchBatch(catchBatch, errors); return errors; } @@ -161,15 +147,11 @@ // -- Internal methods --// // -----------------------------------------------------------------------// - protected void validateCatchBatch(Collection<Batch> batchs, + protected void validateCatchBatch(CatchBatch batch, List<CatchBatchValidationError> errors) { // Vrac - SortingBatch vracBatch = batchHelper.getSortingBatch( - batchs, - "Vrac", - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_VRAC_ID); + SortingBatch vracBatch = batchTreeHelper.getVracBatch(batch); if (log.isDebugEnabled()) { log.debug("Try to validate Vrac batch model " + vracBatch); @@ -179,18 +161,10 @@ addError(errors, n("tutti.persistence.batch.validation.vracNotFound")); } else { // Vrac > Species - SortingBatch speciesBatch = batchHelper.getSortingBatch( - vracBatch, - "Vrac > Species", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + SortingBatch speciesBatch = batchTreeHelper.getSpeciesVracRootBatch(vracBatch); // Vrac > Benthos - SortingBatch benthosBatch = batchHelper.getSortingBatch( - vracBatch, - "Vrac > Benthos", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + SortingBatch benthosBatch = batchTreeHelper.getBenthosVracRootBatch(vracBatch); if (speciesBatch == null) { @@ -201,31 +175,19 @@ } } else { // Vrac > Species > Alive not itemized - SortingBatch livingNotItemizedBatch = batchHelper.getSortingBatch( - speciesBatch, - "Vrac > Species > Alive not itemized", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED); + SortingBatch livingNotItemizedBatch = batchTreeHelper.getSpeciesVracAliveNotItemizedRootBatch(speciesBatch); if (livingNotItemizedBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.vracSpeciesLifeNotFound")); } // Vrac > Species > Inert - SortingBatch inertBatch = batchHelper.getSortingBatch( - speciesBatch, - "Vrac > Species > Inert", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT); + SortingBatch inertBatch = batchTreeHelper.getSpeciesVracInertRootBatch(speciesBatch); if (inertBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.vracSpeciesInertNotFound")); } // Vrac > Species > Alive itemized - SortingBatch aliveItemizedBatch = batchHelper.getSortingBatch( - speciesBatch, - "Vrac > Species > Alive itemized", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED); + SortingBatch aliveItemizedBatch = batchTreeHelper.getSpeciesVracAliveItemizedRootBatch(speciesBatch); if (aliveItemizedBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.vracSpeciesAliveItemizedNotFound")); } @@ -242,31 +204,19 @@ } else { // Vrac > Benthos > Alive not itemized - SortingBatch livingNotItemizedBatch = batchHelper.getSortingBatch( - benthosBatch, - "Vrac > Benthos > Alive not itemized", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_NOT_ITEMIZED); + SortingBatch livingNotItemizedBatch = batchTreeHelper.getBenthosVracAliveNotItemizedRootBatch(benthosBatch); if (livingNotItemizedBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.vracBenthosLifeNotFound")); } // Vrac > Benthos > Inert - SortingBatch inertBatch = batchHelper.getSortingBatch( - benthosBatch, - "Vrac > Benthos > Inert", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_INERT); + SortingBatch inertBatch = batchTreeHelper.getBenthosVracInertRootBatch(benthosBatch); if (inertBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.vracBenthosInertNotFound")); } // Vrac > Benthos > Alive itemized - SortingBatch aliveItemizedBatch = batchHelper.getSortingBatch( - benthosBatch, - "Vrac > Benthos > Alive itermized", - enumeration.PMFM_ID_SORTING_TYPE_2, - enumeration.QUALITATIVE_ID_SORTING_TYPE_2_ALIVE_ITEMIZED); + SortingBatch aliveItemizedBatch = batchTreeHelper.getBenthosVracAliveItemizedRootBatch(benthosBatch); if (aliveItemizedBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.vracBenthosAliveItemizedNotFound")); } @@ -274,39 +224,23 @@ } // Hors Vrac - SortingBatch horsVracBatch = batchHelper.getSortingBatch( - batchs, - "Hors Vrac", - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_HORS_VRAC_ID); + SortingBatch horsVracBatch = batchTreeHelper.getHorsVracBatch(batch); if (horsVracBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.horsVracNotFound")); } else { // Hors Vrac > Species - SortingBatch speciesBatch = batchHelper.getSortingBatch( - horsVracBatch, - "Hors Vrac > Species", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_SPECIES); + SortingBatch speciesBatch = batchTreeHelper.getSpeciesHorsVracRootBatch(horsVracBatch); if (speciesBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.horsVracSpeciesNotFound")); } // Hors Vrac > Benthos - SortingBatch benthosBatch = batchHelper.getSortingBatch( - horsVracBatch, - "Hors Vrac > Benthos", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_BENTHOS); + SortingBatch benthosBatch = batchTreeHelper.getBenthosHorsVracRootBatch(horsVracBatch); if (benthosBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.horsVracBenthosNotFound")); } // Hors Vrac > Marine Litter - SortingBatch marineLitterBatch = batchHelper.getSortingBatch( - horsVracBatch, - "Hors Vrac > Marine Litter", - enumeration.PMFM_ID_SORTING_TYPE, - enumeration.QUALITATIVE_ID_SORTING_TYPE_MARINE_LITTER); + SortingBatch marineLitterBatch = batchTreeHelper.getMarineLitterRootBatch(horsVracBatch); if (marineLitterBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.horsVracMarineLitterNotFound")); @@ -314,11 +248,7 @@ } // Unsorted - SortingBatch unsortedBatch = batchHelper.getSortingBatch( - batchs, - "Unsorted", - enumeration.PMFM_ID_SORTED_UNSORTED, - enumeration.QUALITATIVE_UNSORTED_ID); + SortingBatch unsortedBatch = batchTreeHelper.getRejectedBatch(batch); if (unsortedBatch == null) { addWarning(errors, n("tutti.persistence.batch.validation.unsortedNotFound")); } Modified: trunk/tutti-persistence/src/main/xmi/tutti-persistence.zargo =================================================================== (Binary files differ) Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceReadTest.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -67,7 +67,7 @@ @Before public void setUp() throws Exception { - enumerationFile = TuttiPersistenceServiceLocator.getReferentialPersistenceService().getEnumerationFile(); + enumerationFile = TuttiPersistenceServiceLocator.getTechnicalPersistenceService().getEnumerationFile(); service = TuttiPersistenceServiceLocator.getBenthosBatchPersistenceService(); fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/BenthosBatchPersistenceServiceWriteTest.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -124,7 +124,7 @@ catchBatchService = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); - enumerationFile = referentialService.getEnumerationFile(); + enumerationFile = TuttiPersistenceServiceLocator.getTechnicalPersistenceService().getEnumerationFile(); species = referentialService.getAllSpecies(); assertNotNull(species); @@ -443,7 +443,8 @@ if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", - actualBatch.getSampleCategoryValue()); + actualBatch.getSampleCategoryValue() + ); assertEquals( ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceReadTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceReadTest.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceReadTest.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -66,7 +66,7 @@ @Before public void setUp() throws Exception { - enumerationFile = TuttiPersistenceServiceLocator.getReferentialPersistenceService().getEnumerationFile(); + enumerationFile = TuttiPersistenceServiceLocator.getTechnicalPersistenceService().getEnumerationFile(); service = TuttiPersistenceServiceLocator.getSpeciesBatchPersistenceService(); fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); Modified: trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceWriteTest.java =================================================================== --- trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceWriteTest.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-persistence/src/test/java/fr/ifremer/tutti/persistence/service/SpeciesBatchPersistenceServiceWriteTest.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -116,7 +116,7 @@ CatchBatchPersistenceService catchBatchService = TuttiPersistenceServiceLocator.getCatchBatchPersistenceService(); FishingOperationPersistenceService fishingOperationService = TuttiPersistenceServiceLocator.getFishingOperationPersistenceService(); ReferentialPersistenceService referentialService = TuttiPersistenceServiceLocator.getReferentialPersistenceService(); - enumerationFile = referentialService.getEnumerationFile(); + enumerationFile = TuttiPersistenceServiceLocator.getTechnicalPersistenceService().getEnumerationFile(); species = referentialService.getAllSpecies(); assertNotNull(species); @@ -436,7 +436,8 @@ if (expectedBatch.getSampleCategoryValue() != null && expectedBatch.getSampleCategoryValue() instanceof CaracteristicQualitativeValue) { assertNotNull("Bad sampleCategoryValue : expected <" + ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId() + "> but was <null>", - actualBatch.getSampleCategoryValue()); + actualBatch.getSampleCategoryValue() + ); assertEquals( ((CaracteristicQualitativeValue) expectedBatch.getSampleCategoryValue()).getId(), ((CaracteristicQualitativeValue) actualBatch.getSampleCategoryValue()).getId()); Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/PersistenceService.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -732,6 +732,11 @@ } @Override + public Species getSpeciesByReferenceTaxonId(Integer referenceTaxonId) { + return driver.getSpeciesByReferenceTaxonId(referenceTaxonId); + } + + @Override public Species getSpeciesByReferenceTaxonIdWithVernacularCode(Integer referenceTaxonId) { return driver.getSpeciesByReferenceTaxonIdWithVernacularCode(referenceTaxonId); } @@ -772,6 +777,11 @@ } @Override + public TuttiLocation getLocation(String id) { + return driver.getLocation(id); + } + + @Override public List<Gear> getAllScientificGear() { return driver.getAllScientificGear(); } @@ -961,6 +971,11 @@ driver.deleteAttachment(attachmentId); } + @Override + public void deleteAllAttachment(AttachementObjectTypeEnum objectType, Integer... objectIds) { + driver.deleteAllAttachment(objectType, objectIds); + } + //------------------------------------------------------------------------// //-- Program methods --// //------------------------------------------------------------------------// @@ -1055,6 +1070,11 @@ } @Override + public List<String> getAllProtocolId() { + return driver.getAllProtocolId(); + } + + @Override public TuttiProtocol getProtocol(String id) { return driver.getProtocol(id); } @@ -1078,7 +1098,6 @@ //-- FishingOperation methods --// //------------------------------------------------------------------------// - @Override public int getFishingOperationCount(String cruiseId) { return driver.getFishingOperationCount(cruiseId); @@ -1130,6 +1149,11 @@ } @Override + public Collection<FishingOperation> saveFishingOperations(Collection<FishingOperation> beans) { + return driver.saveFishingOperations(beans); + } + + @Override public void deleteFishingOperation(String id) { driver.deleteFishingOperation(id); } @@ -1159,6 +1183,11 @@ return driver.saveCatchBatch(bean); } + @Override + public void deleteCatchBatch(String fishingOperationId) { + driver.deleteCatchBatch(fishingOperationId); + } + //------------------------------------------------------------------------// //-- Species Batch methods --// //------------------------------------------------------------------------// @@ -1263,7 +1292,7 @@ } //------------------------------------------------------------------------// - //-- Macrodechet Batch methods --// + //-- MarineLitter Batch methods --// //------------------------------------------------------------------------// @Override @@ -1310,6 +1339,11 @@ driver.deleteAccidentalBatch(id); } + @Override + public void deleteAccidentalBatchForFishingOperation(String fishingOperationId) { + driver.deleteAccidentalBatchForFishingOperation(fishingOperationId); + } + //------------------------------------------------------------------------// //-- IndividualObservation Batch methods --// //------------------------------------------------------------------------// @@ -1333,4 +1367,9 @@ public void deleteIndividualObservationBatch(String id) { driver.deleteIndividualObservationBatch(id); } + + @Override + public void deleteIndividualObservationBatchForFishingOperation(String fishingOperationId) { + driver.deleteIndividualObservationBatchForFishingOperation(fishingOperationId); + } } Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportRow.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportRow.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/export/generic/CatchExportRow.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -26,6 +26,7 @@ import com.google.common.base.Joiner; import com.google.common.base.Preconditions; +import fr.ifremer.tutti.persistence.entities.TuttiEntities; import fr.ifremer.tutti.persistence.entities.data.BenthosBatchFrequency; import fr.ifremer.tutti.persistence.entities.data.Cruise; import fr.ifremer.tutti.persistence.entities.data.FishingOperation; Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/UpdateSchemaTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/UpdateSchemaTest.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/UpdateSchemaTest.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -30,7 +30,6 @@ import org.junit.Assert; import org.junit.Before; import org.junit.ClassRule; -import org.junit.Ignore; import org.junit.Test; import org.nuiton.util.Version; Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportService2Test.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportService2Test.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportService2Test.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -25,7 +25,6 @@ */ import com.google.common.io.Files; -import org.nuiton.jaxx.application.ApplicationBusinessException; import fr.ifremer.tutti.persistence.ProgressionModel; import fr.ifremer.tutti.service.PersistenceService; import fr.ifremer.tutti.service.ServiceDbResource; @@ -35,6 +34,7 @@ import org.junit.Before; import org.junit.ClassRule; import org.junit.Test; +import org.nuiton.jaxx.application.ApplicationBusinessException; import java.io.File; import java.net.URL; @@ -196,8 +196,8 @@ "2013;test elevation;1;OTB 20/28.10;B;2;1;1358;;Alosa alosa;Trait B-2-1 ALOSALO Vrac|Trait B-2-1 ALOSALO Vrac - Male 60;Vrac;2;;;Poids;kg;NA;;;;;kg;Mâle;1;60.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;60.0;5.8333335;1.0\n" + "2013;test elevation;1;OTB 20/28.10;B;2;1;1358;;Alosa alosa;Trait B-2-1 ALOSALO Vrac|Trait B-2-1 ALOSALO Vrac - Femelle 40.0;Vrac;2;;;Poids;kg;NA;;;;;kg;Femelle;2;40.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;40.0;8.75;1.0\n" + "2013;test elevation;1;OTB 20/28.10;B;2;1;1938;;Agonus cataphractus;Trait B-2-1 AGONCAT-horsvrac 20;Hors Vrac;1;20.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;20.0;1.0;1.0\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;4622;;Abietinaria abietina;Trait B-2-1 Benthos ABIEABI Vrac 30@@@@avec @@@@commentaire...;Vrac;1;30.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;30.0;7.0;1.0\n" + - "2013;test elevation;1;OTB 20/28.10;B;2;1;380;;Acanthocardia echinata;Trait B-2-1 Benthos ACANECH Vrac 18@@@@avec @@@@commentaire...;Vrac;2;18.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;18.0;7.0;1.0\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;4622;;Abietinaria abietina;Trait B-2-1 Benthos ABIEABI Vrac 30@@@@avec @@@@commentaire...;Vrac;101;30.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;30.0;7.0;1.0\n" + + "2013;test elevation;1;OTB 20/28.10;B;2;1;380;;Acanthocardia echinata;Trait B-2-1 Benthos ACANECH Vrac 18@@@@avec @@@@commentaire...;Vrac;102;18.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;18.0;7.0;1.0\n" + "2013;test elevation;1;OTB 20/28.10;A;1;1;1938;;Agonus cataphractus;AGONCAT-vrac-80;Vrac;1;80.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;80.0;5.4444447;1.0\n" + "2013;test elevation;1;OTB 20/28.10;A;1;1;1358;;Alosa alosa;ALOSALO-vrac|ALOSALO-vrac-male 60;Vrac;2;;;Poids;kg;NA;;;;;kg;Mâle;1;60.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;;60.0;9.074075;1.0\n" + "2013;test elevation;1;OTB 20/28.10;A;1;1;1358;;Alosa alosa;ALOSALO-vrac|ALOSALO-vrac-femelle 40;Vrac;2;;;Poids;kg;NA;;;;;kg;Femelle;2;40.0;;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;5.0;1;0.6;cm;1.0;4;0.6;907.4074;1.0\n" + Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportServiceTest.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportServiceTest.java 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/generic/TuttiExportServiceTest.java 2014-04-21 05:40:03 UTC (rev 1717) @@ -112,35 +112,35 @@ public static final String CATCH_CONTENT_2 = "Annee;Serie;Serie_Partielle;Engin;Code_station;Id_Operation;Poche;Code_Taxon;Code_Espece_Campagne;Nom_scientifique;Commentaire;V_HV;Num_Ordre_V_HV_H2;Tot_V_HV;Ech_V_HV;Type_Volume_Poids_V_HV;Unite_Volume_Poids_V_HV;Class_Tri;Num_Ordre_Class_Tri_H2;Tot_Class_Tri;Ech_Class_Tri;Type_Volume_Poids_Class_Tri;Unite_Volume_Poids_Class_Tri;Sexe;Num_Ordre_Sexe_H2;Tot_Sexe;Ech_Sexe;Type_Volume_Poids_Sexe;Unite_Volume_Poids_Sexe;Maturite;Num_Ordre_Maturite_H2;Tot_Maturite;Ech_Maturite;Type_Volume_Poids_Maturite;Unite_Volume_Poids_Maturite;Age;Num_Ordre_Age_H2;Tot_Age;Ech_Age;Type_Volume_Poids_Age;Unite_Volume_Poids_Age;Code_Longueur;Libelle_Longueur;Taille;NumOrdre_Taille_H2;Poids_Classe_Taille;Unite_Taille;Precision_Mesure;Nbr;Poids_Reference;Coef_Elev_Espece_Capture;Coef_Final_Elevation\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;365;;Aequipecten opercularis;taxon;Vrac;1;0.005;0.005;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.005;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;491;ALLOSPP;Alloteuthis;taxon;Vrac;2;0.004;0.004;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.004;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;300;;Buccinum undatum;taxon;Vrac;3;0.015;0.015;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.015;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1811;CALMLYR;Callionymus lyra;taxon;Vrac;4;0.07;0.07;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.07;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1644;DICELAB;Dicentrarchus labrax;taxon;Vrac;5;1.06;1.06;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;36.0;1;;cm;1.0;1;1.06;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1644;DICELAB;Dicentrarchus labrax;taxon;Vrac;5;1.06;1.06;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;38.0;2;;cm;1.0;1;1.06;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1362;ENGRENC;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;1;;cm;0.5;2;0.038;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1362;ENGRENC;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;12.5;2;;cm;0.5;1;0.038;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1362;ENGRENC;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;13.0;3;;cm;0.5;1;0.038;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1986;;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;25.0;1;;cm;1.0;1;0.66;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1986;;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;28.0;2;;cm;1.0;1;0.66;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1986;;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;30.0;3;;cm;1.0;1;0.66;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;489;LOLIVUL;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;9.0;1;;cm;1.0;1;0.28;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;489;LOLIVUL;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;10.0;2;;cm;1.0;3;0.28;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;489;LOLIVUL;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;11.0;3;;cm;1.0;2;0.28;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1988;;Microstomus kitt;taxon;Vrac;9;0.152;0.152;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;15.0;1;;cm;1.0;1;0.152;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1988;;Microstomus kitt;taxon;Vrac;9;0.152;0.152;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;18.0;2;;cm;1.0;1;0.152;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1690;MULLSUR;Mullus surmuletus;taxon;Vrac;10;0.036;0.036;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;11.0;1;;cm;1.0;1;0.036;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1978;;Pleuronectes platessa;taxon;Vrac;11;0.852;0.852;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;26.0;1;;cm;1.0;1;0.852;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1978;;Pleuronectes platessa;taxon;Vrac;11;0.852;0.852;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;30.0;2;;cm;1.0;1;0.852;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1351;SARDPIL;Sardina pilchardus;taxon;Vrac;12;0.022;0.022;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;1;;cm;0.5;1;0.022;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1772;SCOMSCO;Scomber scombrus;taxon;Vrac;13;0.18;0.18;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;27.0;1;;cm;1.0;1;0.18;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1242;SCYOCAN;Scyliorhinus canicula;taxon|categorie_individu;Vrac;14;;;Poids;kg;NA;;;;;kg;Femelle;1;1.0;1.0;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;51.0;1;;cm;1.0;1;1.0;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1242;SCYOCAN;Scyliorhinus canicula;taxon|categorie_individu;Vrac;14;;;Poids;kg;NA;;;;;kg;Femelle;1;1.0;1.0;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;55.0;2;;cm;1.0;1;1.0;1.0001919;1.0\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;8.0;1;;cm;1.0;1;0.96;136.69289;136.58333\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;9.0;2;;cm;1.0;20;0.96;136.69289;136.58333\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;10.0;3;;cm;1.0;89;0.96;136.69289;136.58333\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;11.0;4;;cm;1.0;5;0.96;136.69289;136.58333\n" + - "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;G - Gros;2;0.13;0.13;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;23.0;1;;cm;1.0;1;0.13;1009.42444;1.0"; + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;365;;Aequipecten opercularis;taxon;Vrac;1;0.005;0.005;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.005;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;491;ALLOSPP;Alloteuthis;taxon;Vrac;2;0.004;0.004;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.004;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;300;;Buccinum undatum;taxon;Vrac;3;0.015;0.015;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.015;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1811;CALMLYR;Callionymus lyra;taxon;Vrac;4;0.07;0.07;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;;;;;;;;1;0.07;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1644;DICELAB;Dicentrarchus labrax;taxon;Vrac;5;1.06;1.06;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;36.0;1;;cm;1.0;1;1.06;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1644;DICELAB;Dicentrarchus labrax;taxon;Vrac;5;1.06;1.06;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;38.0;2;;cm;1.0;1;1.06;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1362;ENGRENC;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;1;;cm;0.5;2;0.038;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1362;ENGRENC;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;12.5;2;;cm;0.5;1;0.038;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1362;ENGRENC;Engraulis encrasicolus;taxon;Vrac;6;0.038;0.038;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;13.0;3;;cm;0.5;1;0.038;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1986;;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;25.0;1;;cm;1.0;1;0.66;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1986;;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;28.0;2;;cm;1.0;1;0.66;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1986;;Limanda limanda;taxon;Vrac;7;0.66;0.66;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;30.0;3;;cm;1.0;1;0.66;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;489;LOLIVUL;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;9.0;1;;cm;1.0;1;0.28;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;489;LOLIVUL;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;10.0;2;;cm;1.0;3;0.28;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;489;LOLIVUL;Loligo vulgaris;taxon;Vrac;8;0.28;0.28;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;302;Longueur du manteau (LM) - individu - manteau - Mesure au cm par un observateur;11.0;3;;cm;1.0;2;0.28;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1988;;Microstomus kitt;taxon;Vrac;9;0.152;0.152;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;15.0;1;;cm;1.0;1;0.152;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1988;;Microstomus kitt;taxon;Vrac;9;0.152;0.152;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;18.0;2;;cm;1.0;1;0.152;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1690;MULLSUR;Mullus surmuletus;taxon;Vrac;10;0.036;0.036;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;11.0;1;;cm;1.0;1;0.036;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1978;;Pleuronectes platessa;taxon;Vrac;11;0.852;0.852;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;26.0;1;;cm;1.0;1;0.852;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1978;;Pleuronectes platessa;taxon;Vrac;11;0.852;0.852;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;30.0;2;;cm;1.0;1;0.852;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1351;SARDPIL;Sardina pilchardus;taxon;Vrac;12;0.022;0.022;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;307;Longueur totale (LT) - individu - totale - Mesure au 1/2 cm par un observateur;10.5;1;;cm;0.5;1;0.022;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1772;SCOMSCO;Scomber scombrus;taxon;Vrac;13;0.18;0.18;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;27.0;1;;cm;1.0;1;0.18;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1242;SCYOCAN;Scyliorhinus canicula;taxon|categorie_individu;Vrac;14;;;Poids;kg;NA;;;;;kg;Femelle;1;1.0;1.0;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;51.0;1;;cm;1.0;1;1.0;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1242;SCYOCAN;Scyliorhinus canicula;taxon|categorie_individu;Vrac;14;;;Poids;kg;NA;;;;;kg;Femelle;1;1.0;1.0;Poids;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;55.0;2;;cm;1.0;1;1.0;1.0;1.0\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;8.0;1;;cm;1.0;1;0.96;136.71875;136.58333\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;9.0;2;;cm;1.0;20;0.96;136.71875;136.58333\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;10.0;3;;cm;1.0;89;0.96;136.71875;136.58333\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;P - Petit;1;131.12;0.96;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;11.0;4;;cm;1.0;5;0.96;136.71875;136.58333\n" + + "2010;Campagne CGFS;;GOV 19.7/25.9;20;20;1;1662;TRACTRA;Trachurus trachurus;taxon|categorie_individu;Vrac;15;;;Poids;kg;G - Gros;2;0.13;0.13;Poids;kg;NA;;;;;kg;NA;;;;;kg;NA;;;;;kg;306;Longueur totale (LT) - individu - totale - Mesure au cm par un observateur;23.0;1;;cm;1.0;1;0.13;1009.6154;1.0"; public static final String MARINE_LITTER_CONTENT = "Annee;Serie;Serie_Partielle;Engin;Code_station;Id_Operation;Poche;MarineLitterCategory;MarineLitterSizeCategory;Number;Weight;Commentaire\n" + @@ -380,6 +380,8 @@ @Test public void exportCatchesAndSpecies() throws Exception { +// persistenceService.clearAllCaches(); + File protocolFile = new File("src/test/resources/tuttiProtocol.tuttiProtocol"); TuttiProtocol protocol = dbResource.loadProtocol(protocolFile); Modified: trunk/tutti-ui-swing/src/main/filtered-resources/log4j.properties =================================================================== --- trunk/tutti-ui-swing/src/main/filtered-resources/log4j.properties 2014-04-21 04:44:42 UTC (rev 1716) +++ trunk/tutti-ui-swing/src/main/filtered-resources/log4j.properties 2014-04-21 05:40:03 UTC (rev 1717) @@ -31,6 +31,7 @@ # tutti levels log4j.logger.fr.ifremer=INFO +log4j.logger.fr.ifremer.tutti.persistence.service.batch.BatchTreeHelper=DEBUG #See https://forum.hibernate.org/viewtopic.php?p=2404391 log4j.logger.org.hibernate.engine.StatefulPersistenceContext.ProxyWarnLog=ERROR

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r1716 - trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/marinelitter/create
by tchemit＠users.forge.codelutin.com 21 Apr '14

21 Apr '14

Author: tchemit Date: 2014-04-21 06:44:42 +0200 (Mon, 21 Apr 2014) New Revision: 1716 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1716 Log: fixes #4978 Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/marinelitter/create/CreateMarineLitterBatchUIModel.java Modified: trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/marinelitter/create/CreateMarineLitterBatchUIModel.java =================================================================== --- trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/marinelitter/create/CreateMarineLitterBatchUIModel.java 2014-04-20 14:44:51 UTC (rev 1715) +++ trunk/tutti-ui-swing/src/main/java/fr/ifremer/tutti/ui/swing/content/operation/catches/marinelitter/create/CreateMarineLitterBatchUIModel.java 2014-04-21 04:44:42 UTC (rev 1716) @@ -129,5 +129,6 @@ setMarineLitterCategory(null); setMarineLitterSizeCategory(null); setNumber(null); + setWeight(null); } } \ No newline at end of file

1 0

r1715 - trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/psionimport
by tchemit＠users.forge.codelutin.com 20 Apr '14

20 Apr '14

Author: tchemit Date: 2014-04-20 16:44:51 +0200 (Sun, 20 Apr 2014) New Revision: 1715 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1715 Log: change log level Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/psionimport/PsionImportModel.java Modified: trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/psionimport/PsionImportModel.java =================================================================== --- trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/psionimport/PsionImportModel.java 2014-04-20 14:38:15 UTC (rev 1714) +++ trunk/tutti-service/src/main/java/fr/ifremer/tutti/service/psionimport/PsionImportModel.java 2014-04-20 14:44:51 UTC (rev 1715) @@ -107,8 +107,8 @@ // new batch batchsByCategory.put(cacheCode, batchModel); - if (log.isInfoEnabled()) { - log.info("Added " + batchModel); + if (log.isDebugEnabled()) { + log.debug("Added " + batchModel); } } else { @@ -122,8 +122,8 @@ int number = entry.getValue().intValue(); mergeBatch.addFrequency(stepClass, number); } - if (log.isInfoEnabled()) { - log.info("Merged " + batchModel + " to " + mergeBatch); + if (log.isDebugEnabled()) { + log.debug("Merged " + batchModel + " to " + mergeBatch); } } }

1 0

r1714 - trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service
by tchemit＠users.forge.codelutin.com 20 Apr '14

20 Apr '14

Author: tchemit Date: 2014-04-20 16:38:15 +0200 (Sun, 20 Apr 2014) New Revision: 1714 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1714 Log: add javadoc evict species cache as soon as the protocol is changed Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceService.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceService.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceService.java 2014-04-20 14:25:12 UTC (rev 1713) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/ProtocolPersistenceService.java 2014-04-20 14:38:15 UTC (rev 1714) @@ -26,6 +26,7 @@ import fr.ifremer.tutti.persistence.TuttiPersistenceServiceImplementor; import fr.ifremer.tutti.persistence.entities.protocol.TuttiProtocol; +import org.springframework.cache.annotation.CacheEvict; import java.util.List; @@ -37,8 +38,23 @@ */ public interface ProtocolPersistenceService extends TuttiPersistenceServiceImplementor { + /** + * The protocol used by the persistence lay (used to consolidate entites). + * + * @return The protocol used by the persistence layer + * @see #setProtocol(TuttiProtocol) + * @since 2.6 + */ TuttiProtocol getProtocol(); + /** + * Set the protocol to use by the persistence layer. + * + * @param protocol the new protocol to use (can be null) + * @see #getProtocol() + * @since 2.6 + */ + @CacheEvict(value = {"species", "referentSpecies", "referentSpeciesById", "referentSpeciesByIdVernacular"}, allEntries = true) void setProtocol(TuttiProtocol protocol); boolean isProtocolExist(String id); @@ -51,13 +67,10 @@ TuttiProtocol getProtocol(String id); - // @Transactional(readOnly = false) TuttiProtocol createProtocol(TuttiProtocol bean); - // @Transactional(readOnly = false) TuttiProtocol saveProtocol(TuttiProtocol bean); - // @Transactional(readOnly = false) void deleteProtocol(String protocolId); }

1 0

r1713 - trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra
by tchemit＠users.forge.codelutin.com 20 Apr '14

20 Apr '14

Author: tchemit Date: 2014-04-20 16:25:12 +0200 (Sun, 20 Apr 2014) New Revision: 1713 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1713 Log: fix sumatra v2 export test Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportServiceV2Test.java Modified: trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportServiceV2Test.java =================================================================== --- trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportServiceV2Test.java 2014-04-19 13:33:59 UTC (rev 1712) +++ trunk/tutti-service/src/test/java/fr/ifremer/tutti/service/export/sumatra/CatchesSumatraExportServiceV2Test.java 2014-04-20 14:25:12 UTC (rev 1713) @@ -64,7 +64,7 @@ "Année;Station;Poche;Espèce;Signe;Tri;Total;PoidsMoy;LongueurMoy;NbIndividus;Moule\n" + "2013;A;1;CHAMMAG;;100.0;100.0;2.5;NA;40;0.4\n" + "2013;A;1;ECHIGAM;;100.0;100.0;0.23980816;NA;417;4.17\n" + - "2013;A;1;BRISATLAN;;100.0;100.0;1.0638298;NA;94;0.94"; + "2013;A;1;BRISATLAN;;100.0;100.0;1.0638298;10.571428;94;0.94"; protected CatchesSumatraExportServiceV2 service;

1 0

r1712 - trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service
by tchemit＠users.forge.codelutin.com 19 Apr '14

19 Apr '14

Author: tchemit Date: 2014-04-19 15:33:59 +0200 (Sat, 19 Apr 2014) New Revision: 1712 Url: http://forge.codelutin.com/projects/tutti/repository/revisions/1712 Log: fixes #4960 Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/VesselPersonFeaturesPersistenceHelper.java Modified: trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/VesselPersonFeaturesPersistenceHelper.java =================================================================== --- trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/VesselPersonFeaturesPersistenceHelper.java 2014-04-19 13:25:21 UTC (rev 1711) +++ trunk/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/service/VesselPersonFeaturesPersistenceHelper.java 2014-04-19 13:33:59 UTC (rev 1712) @@ -118,6 +118,7 @@ vesselPersonFeatures = VesselPersonFeatures.Factory.newInstance(); vesselPersonFeaturesPerPerson.put(personId, vesselPersonFeatures); vesselPersonFeatures.setOperation(fishingOperation); + vesselPersonFeatures.setFishingTrip(fishingOperation.getFishingTrip()); vesselPersonFeatures.setPerson(person); vesselPersonFeatures.setStartDate(fishingOperation.getStartDateTime()); vesselPersonFeatures.setEndDate(fishingOperation.getEndDateTime());

1 0