[Tutti-commits] 04/09: Ajout d'un test pour valider l'import BigFin

This is an automated email from the git hooks/post-receive script. New commit to branch develop in repository tutti. See http://git.codelutin.com/tutti.git commit 23e84a3e5b499bd54009af2ed72334d6d7d61679 Author: Tony CHEMIT <chemit@codelutin.com> Date: Sat Sep 19 10:57:02 2015 +0200 Ajout d'un test pour valider l'import BigFin --- .../entities/data/SpeciesAbleBatchs.java | 16 +- .../service/bigfin/BigfinImportService2Test.java | 168 +- .../resources/bigfin/importbigfin2.tuttiProtocol | 4714 ++++++++++++++++++++ 3 files changed, 4893 insertions(+), 5 deletions(-) diff --git a/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/data/SpeciesAbleBatchs.java b/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/data/SpeciesAbleBatchs.java index 5277c3d..b8768dc 100644 --- a/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/data/SpeciesAbleBatchs.java +++ b/tutti-persistence/src/main/java/fr/ifremer/tutti/persistence/entities/data/SpeciesAbleBatchs.java @@ -73,7 +73,7 @@ public class SpeciesAbleBatchs { } - public static <B extends SpeciesAbleBatch> List<B> getChildBatchs(B batch) { + public static <B extends SpeciesAbleBatch> List<B> getChildBatchs(B batch) { return (List<B>) batch.getChildBatchs(); } @@ -106,6 +106,20 @@ public class SpeciesAbleBatchs { } + public static <B extends SpeciesAbleBatch> void grabSampleCategorieValuesChildBatchs(B batch, Set<Integer> categoryIds) { + + CaracteristicQualitativeValue sampleCategoryValue = (CaracteristicQualitativeValue) batch.getSampleCategoryValue(); + + categoryIds.add(sampleCategoryValue.getIdAsInt()); + if (!batch.isChildBatchsEmpty()) { + for (SpeciesAbleBatch child : batch.getChildBatchs()) { + grabSampleCategorieValuesChildBatchs(child, categoryIds); + } + } + + + } + public static class SpeciesAbleBatchCategoryPredicate implements Predicate<SpeciesAbleBatch> { diff --git a/tutti-service/src/test/java/fr/ifremer/tutti/service/bigfin/BigfinImportService2Test.java b/tutti-service/src/test/java/fr/ifremer/tutti/service/bigfin/BigfinImportService2Test.java index 9c6d870..0eec620 100644 --- a/tutti-service/src/test/java/fr/ifremer/tutti/service/bigfin/BigfinImportService2Test.java +++ b/tutti-service/src/test/java/fr/ifremer/tutti/service/bigfin/BigfinImportService2Test.java @@ -30,6 +30,8 @@ import com.google.common.collect.Lists; import com.google.common.io.Files; import fr.ifremer.adagio.core.dao.referential.pmfm.PmfmId; import fr.ifremer.adagio.core.dao.referential.pmfm.QualitativeValueId; +import fr.ifremer.tutti.persistence.entities.TuttiEntities; +import fr.ifremer.tutti.persistence.entities.data.BatchContainer; import fr.ifremer.tutti.persistence.entities.data.CatchBatch; import fr.ifremer.tutti.persistence.entities.data.CatchBatchs; import fr.ifremer.tutti.persistence.entities.data.Cruise; @@ -39,6 +41,7 @@ import fr.ifremer.tutti.persistence.entities.data.FishingOperations; import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatch; import fr.ifremer.tutti.persistence.entities.data.SpeciesAbleBatchs; import fr.ifremer.tutti.persistence.entities.data.SpeciesBatch; +import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchFrequency; import fr.ifremer.tutti.persistence.entities.data.SpeciesBatchs; import fr.ifremer.tutti.persistence.entities.referential.Caracteristic; import fr.ifremer.tutti.persistence.entities.referential.CaracteristicQualitativeValue; @@ -58,7 +61,10 @@ import org.nuiton.util.DateUtil; import java.io.File; import java.io.IOException; +import java.util.LinkedHashSet; import java.util.List; +import java.util.Map; +import java.util.Set; /** * Created on 3/9/15. @@ -90,13 +96,10 @@ public class BigfinImportService2Test { public static final String OPERATION_1_ID = "1"; - public static final String OPERATION_2_ID = "2"; - - public static final String OPERATION_3_ID = "0"; - @Before public void setUp() throws Exception { + dbResource.setUseLegacyPersonDepartement(false); dataDirectory = dbResource.getConfig().getDataDirectory(); TuttiServiceContext serviceContext = dbResource.getServiceContext(); @@ -212,4 +215,161 @@ public class BigfinImportService2Test { } } + + @Test + public void testSpeciesWithNoneAndUnknownedSex() throws IOException { + + // Load protocol + + dbResource.loadInternalProtocolFile("bigfin/", "importbigfin2"); + + Species tracTruSpecies = persistenceService.getSpeciesByReferenceTaxonId(1662); + Assert.assertNotNull(tracTruSpecies); + Species tracDraSpecies = persistenceService.getSpeciesByReferenceTaxonId(1759); + Assert.assertNotNull(tracDraSpecies); + Species rajaClaSpecies = persistenceService.getSpeciesByReferenceTaxonId(1302); + Assert.assertNotNull(rajaClaSpecies); + Species trigLyrSpecies = persistenceService.getSpeciesByReferenceTaxonId(1910); + Assert.assertNotNull(trigLyrSpecies); + + Caracteristic sizeCaracteristic = persistenceService.getSizeCategoryCaracteristic(); + Assert.assertNotNull(sizeCaracteristic); + Map<String, CaracteristicQualitativeValue> sizeQualitativeValues = TuttiEntities.splitById(sizeCaracteristic.getQualitativeValue()); + + Caracteristic sexCaracteristic = persistenceService.getSexCaracteristic(); + Assert.assertNotNull(sexCaracteristic); + Map<String, CaracteristicQualitativeValue> sexQualitativeValues = TuttiEntities.splitById(sexCaracteristic.getQualitativeValue()); + + // Create cruise + + Cruise cruise = Cruises.newCruise(); + cruise.setName("MyCruise2"); + cruise.setMultirigNumber(1); + cruise.setBeginDate(DateUtil.createDate(1, 9, 2014)); + cruise.setEndDate(DateUtil.createDate(30, 9, 2014)); + TuttiLocation harbour = persistenceService.getAllHarbour().get(0); + cruise.setDepartureLocation(harbour); + cruise.setReturnLocation(harbour); + cruise.setProgram(dataContext.program); + cruise.setVessel(persistenceService.getAllScientificVessel().get(0)); + cruise.setHeadOfMission(Lists.newArrayList(persistenceService.getAllPerson().get(0))); + + cruise = persistenceService.createCruise(cruise); + + // Create empty fishing operation + FishingOperation fishingOperation = FishingOperations.newFishingOperation(); + fishingOperation.setCruise(cruise); + fishingOperation.setFishingOperationNumber(1); + fishingOperation.setStationNumber("A"); + fishingOperation.setGearShootingStartDate(DateUtil.createDate(14, 9, 2015)); + fishingOperation.setGearShootingEndDate(DateUtil.createDate(14, 9, 2015)); + fishingOperation = persistenceService.createFishingOperation(fishingOperation); + + CatchBatch catchBatch = CatchBatchs.newCatchBatch(); + catchBatch.setFishingOperation(fishingOperation); + + persistenceService.createCatchBatch(catchBatch); + + { + String fileContent = "Study name,ID,Date,LOC,STA,COMMENT,GPS X,GPS Y,SP CODE,SPEC,LENGTH (mm),WEIGHT (g),SEX,SIZE,MT,MS\n" + + "Test, 1,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,TRAC-TRU,200, ,None, 2,None,\n" + + "Test, 2,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,TRAC-TRU,201, ,None, 1,None,\n" + + "Test, 3,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,TRAC-TRU,202, ,None, 1,None,\n" + + "Test, 4,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,TRAC-TRU,203, ,None, 1,None,\n" + + "Test, 5,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,tracdra, 204, ,None, 0,None,\n" + + "Test, 6,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,tracdra, 205, ,Male, 0,None,\n" + + "Test, 7,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,tracdra, 206, ,Female, 0,None,\n" + + "Test, 8,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,tracdra, 207, ,Unknown,0,None,\n" + + "Test,14,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,rajacla, 213, ,Female, 0,None,\n" + + "Test,15,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,rajacla, 214, ,Female, 0,None,\n" + + "Test,16,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,rajacla, 215, ,Male, 0,None,\n" + + "Test,17,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,rajacla, 216, ,Female, 0,None,\n" + + "Test,18,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,rajacla, 217, ,Female, 0,None,\n" + + "Test,18,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,triglyr, 500,1000,None, 0,None,\n" + + "Test,18,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,triglyr, 510, ,None, 0,None,\n" + + "Test,18,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,triglyr, 520, ,None, 0,None,\n" + + "Test,18,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,triglyr, 530, ,None, 0,None,\n" + + "Test,18,09/14/15 09:49:32,,A,,47.24713560992085,-1.5474773011082363,,triglyr, 500, ,None, 0,None,"; + + File importFile = dbResource.getConfig().newTempFile("bigFin1"); + Files.write(fileContent, importFile, Charsets.UTF_8); + + BigfinImportResult importResult = service.importFile(importFile, fishingOperation, catchBatch); + + int nbFrequenciesAdded = importResult.getNbFrequenciesImported(); + List<String> errors = importResult.getErrors(); + List<String> warnings = importResult.getWarnings(); + + if (log.isInfoEnabled()) { + log.info("Frequencies Imported: " + nbFrequenciesAdded); + log.info("Errors: " + errors.size()); + log.info("Warnings: " + warnings.size()); + } + + int nbNewFrequencies = 18; + Assert.assertEquals(nbNewFrequencies, nbFrequenciesAdded); + Assert.assertEquals(0, errors.size()); + Assert.assertEquals(0, warnings.size()); + + BatchContainer<SpeciesBatch> rootSpeciesBatch = persistenceService.getRootSpeciesBatch(fishingOperation.getId(), false); + Assert.assertNotNull(rootSpeciesBatch); + Assert.assertEquals(4, rootSpeciesBatch.sizeChildren()); + + Set<Species> speciesSet = new LinkedHashSet<>(); + SpeciesAbleBatchs.grabSpeciesChildBatchs(rootSpeciesBatch.getChildren(), speciesSet); + Assert.assertEquals(4, speciesSet.size()); + Assert.assertTrue(speciesSet.contains(rajaClaSpecies)); + Assert.assertTrue(speciesSet.contains(tracDraSpecies)); + Assert.assertTrue(speciesSet.contains(tracTruSpecies)); + Assert.assertTrue(speciesSet.contains(trigLyrSpecies)); + + for (SpeciesBatch speciesBatch : rootSpeciesBatch.getChildren()) { + + Set<Integer> sampleCategories = new LinkedHashSet<>(); + SpeciesAbleBatchs.grabSampleCategorieValuesChildBatchs(speciesBatch, sampleCategories); + List<SpeciesBatchFrequency> allSpeciesBatchFrequency = persistenceService.getAllSpeciesBatchFrequency(speciesBatch.getId()); + + if (rajaClaSpecies.equals(speciesBatch.getSpecies())) { + + // 2 catégories Male, Femelle + Vrac + Assert.assertEquals(2, speciesBatch.getChildBatchs().size()); + Assert.assertEquals(3, sampleCategories.size()); + Assert.assertTrue(sampleCategories.contains(311)); // Vrac + Assert.assertTrue(sampleCategories.contains(300)); // M + Assert.assertTrue(sampleCategories.contains(301)); // F + Assert.assertEquals(0, allSpeciesBatchFrequency.size()); + } else if (tracTruSpecies.equals(speciesBatch.getSpecies())) { + + // 2 categories Gros et Petit + Assert.assertEquals(2, speciesBatch.getChildBatchs().size()); + Assert.assertEquals(3, sampleCategories.size()); + Assert.assertTrue(sampleCategories.contains(305)); // G + Assert.assertTrue(sampleCategories.contains(307)); // P + Assert.assertEquals(0, allSpeciesBatchFrequency.size()); + } else if (tracDraSpecies.equals(speciesBatch.getSpecies())) { + + // 4 catégories Non sexe, Male, Femelle et Sexe inconnu + Vrac + Assert.assertEquals(4, speciesBatch.getChildBatchs().size()); + Assert.assertEquals(5, sampleCategories.size()); + Assert.assertTrue(sampleCategories.contains(311)); // Vrac + Assert.assertTrue(sampleCategories.contains(299)); // U + Assert.assertTrue(sampleCategories.contains(300)); // M + Assert.assertTrue(sampleCategories.contains(301)); // F + Assert.assertTrue(sampleCategories.contains(302)); // N + Assert.assertEquals(0, allSpeciesBatchFrequency.size()); + } else if (trigLyrSpecies.equals(speciesBatch.getSpecies())) { + + //FIXME Changer ce test quand on aura intégrer l'évolution 7637 + // Pas de catégorie + Assert.assertEquals(0, speciesBatch.getChildBatchs().size()); + Assert.assertEquals(1, sampleCategories.size()); + Assert.assertTrue(sampleCategories.contains(311)); // Vrac + Assert.assertEquals(4, allSpeciesBatchFrequency.size()); + } + } + + + } + + } } diff --git a/tutti-service/src/test/resources/bigfin/importbigfin2.tuttiProtocol b/tutti-service/src/test/resources/bigfin/importbigfin2.tuttiProtocol new file mode 100644 index 0000000..824cab7 --- /dev/null +++ b/tutti-service/src/test/resources/bigfin/importbigfin2.tuttiProtocol @@ -0,0 +1,4714 @@ +id: 3d89f16e-2a47-4402-b643-be601a31eb34 +name: Protocole EVHOE 2015 +benthos: +- !SpeciesProtocol + id: 8d36df0e-4e92-4fae-b0cc-16c7e66b86ed + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 7 + speciesSurveyCode: MBPORIF + weightEnabled: true +- !SpeciesProtocol + id: f06f5a83-3dc3-45ff-9cc7-a35db6deb7ca + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 6129 + speciesSurveyCode: AXININF + weightEnabled: true +- !SpeciesProtocol + id: 63afd9b2-1bea-4dee-ba8c-a826e1af959e + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4656 + speciesSurveyCode: SUBEFIC + weightEnabled: true +- !SpeciesProtocol + id: 0d521d61-4e91-42e6-bbfa-47d51c42fda2 + speciesReferenceTaxonId: 12027 + speciesSurveyCode: DESMFRU + weightEnabled: true +- !SpeciesProtocol + id: a5fd3aa9-c4e4-4ce0-a1f2-51e377d60569 + speciesReferenceTaxonId: 12 + speciesSurveyCode: CLHYDRZ + weightEnabled: true +- !SpeciesProtocol + id: fd71877e-bd32-4fff-b446-cb533640b46e + speciesReferenceTaxonId: 4622 + speciesSurveyCode: ABIEABI + weightEnabled: true +- !SpeciesProtocol + id: a0553363-b8f4-4ee1-9bfb-37fb2b451c3d + speciesReferenceTaxonId: 4685 + speciesSurveyCode: HYDAFAL + weightEnabled: true +- !SpeciesProtocol + id: 96f45387-d9dd-4df0-94fc-a755a10bf9c8 + speciesReferenceTaxonId: 4682 + speciesSurveyCode: NEMEANT + weightEnabled: true +- !SpeciesProtocol + id: 1ded8dfd-60f0-4c31-840b-651cbae3fea0 + speciesReferenceTaxonId: 4667 + speciesSurveyCode: NEMERAM + weightEnabled: true +- !SpeciesProtocol + id: 31cc9ffe-20fc-47dc-a4c1-c8c67d81a41d + speciesReferenceTaxonId: 4736 + speciesSurveyCode: HLECHAL + weightEnabled: true +- !SpeciesProtocol + id: f16a8aef-cc9c-4913-a9be-f05e8ef41e9a + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 131 + speciesSurveyCode: CLANTHO + weightEnabled: true +- !SpeciesProtocol + id: cac4db2b-b0b3-40a6-9f74-9c50ed833af9 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4386 + speciesSurveyCode: ALCYGLO + weightEnabled: true +- !SpeciesProtocol + id: 2898a143-5073-4a08-aa34-9ca21c8d96d1 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 3021 + speciesSurveyCode: ALCYDIG + weightEnabled: true +- !SpeciesProtocol + id: e5a86b41-246a-4c10-b84b-d25c5676a5f5 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 6804 + speciesSurveyCode: FUNIQUA + weightEnabled: true +- !SpeciesProtocol + id: b3b72f8b-81d0-4e98-958b-3d107a2fb9d1 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 134 + speciesSurveyCode: PENNPHO + weightEnabled: true +- !SpeciesProtocol + id: 85cca139-c860-45f3-b7d3-3a5f13b69357 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 3006 + speciesSurveyCode: PRTOGRI + weightEnabled: true +- !SpeciesProtocol + id: 6c583529-d166-4c60-939d-39979d53ac12 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 2224 + speciesSurveyCode: ORACTIN + weightEnabled: true +- !SpeciesProtocol + id: fe0385f9-29d5-4726-a033-934a6ef46686 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4734 + speciesSurveyCode: URTIEQU + weightEnabled: true +- !SpeciesProtocol + id: f5ed6a4a-c0a1-46f1-ba03-871b94a15c20 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4623 + speciesSurveyCode: ACTU + weightEnabled: true +- !SpeciesProtocol + id: 167862ed-650d-4a55-84dd-9d5aac09f047 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4626 + speciesSurveyCode: ADAMCAR + weightEnabled: true +- !SpeciesProtocol + id: 4f181e75-57b7-45f1-983d-d00a6ba4f774 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4378 + speciesSurveyCode: CLLCPAR + weightEnabled: true +- !SpeciesProtocol + id: 5da0b2d0-8d1e-4209-a22d-8e4f79e57120 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4412 + speciesSurveyCode: METRSEN + weightEnabled: true +- !SpeciesProtocol + id: db64ebb2-1ec0-4f50-b1e2-1637a94c6c28 + speciesReferenceTaxonId: 4731 + speciesSurveyCode: ORSCLER + weightEnabled: true +- !SpeciesProtocol + id: 55c2aeb1-a4ba-4d7e-97e8-8a3496a2a903 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4385 + speciesSurveyCode: CAROSMI + weightEnabled: true +- !SpeciesProtocol + id: d75ee35b-bf05-457e-9f2f-84c234cc1606 + speciesReferenceTaxonId: 7230 + speciesSurveyCode: MADROCU + weightEnabled: true +- !SpeciesProtocol + id: 455cc4ff-5ff4-4fd6-82bb-692be11a3428 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4418 + speciesSurveyCode: EPZAINC + weightEnabled: true +- !SpeciesProtocol + id: aab52d5f-cd08-4feb-99e2-9dc524608cd7 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 7327 + speciesSurveyCode: EPZAPAG + weightEnabled: true +- !SpeciesProtocol + id: 18590b15-3031-473a-a8ef-ede338532937 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 142 + speciesSurveyCode: MBNEMRT + weightEnabled: true +- !SpeciesProtocol + id: 236d6905-f332-4c00-9721-4deab5737905 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 145 + speciesSurveyCode: MBSIPUN + weightEnabled: true +- !SpeciesProtocol + id: ebe371b9-cf90-4f87-83e7-1261f2bd3c6c + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 147 + speciesSurveyCode: SIPSNUD + weightEnabled: true +- !SpeciesProtocol + id: 5cb27749-46d0-44a6-89f1-c72bf3caad33 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 150 + speciesSurveyCode: MBANNEL + weightEnabled: true +- !SpeciesProtocol + id: 51046477-8f8d-4965-ac39-30c2ba597f80 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 155 + speciesSurveyCode: APHRACU + weightEnabled: true +- !SpeciesProtocol + id: 7aadeea5-1bec-4d3f-8f24-c60050b02db9 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 4298 + speciesSurveyCode: LAET + weightEnabled: true +- !SpeciesProtocol + id: 4562448b-de70-4bec-a95f-f8c22e66a756 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 3240 + speciesSurveyCode: DIOPNEA + weightEnabled: true +- !SpeciesProtocol + id: 4613bc0b-ad15-415e-a037-0fce480fd171 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 3241 + speciesSurveyCode: HYALTUB + weightEnabled: true +- !SpeciesProtocol + id: 263dcc55-98ba-4a88-86e6-9c6f62917a92 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 7125 + speciesSurveyCode: FMCHAEO + weightEnabled: true +- !SpeciesProtocol + id: 59135cb6-ebb4-450d-b3a2-a79dd1b7205c + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 211 + speciesSurveyCode: STERSCU + weightEnabled: true +- !SpeciesProtocol + id: d1f99551-52ec-4257-8cdc-e0624fd5f70e + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 156 + speciesSurveyCode: OWENFUS + weightEnabled: true +- !SpeciesProtocol + id: 803adc90-0d66-4817-93e6-2c42b2cb50e8 + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 203 + speciesSurveyCode: LANICON + weightEnabled: true +- !SpeciesProtocol + id: 32edb779-4fb6-4557-95c1-ddfb3d85b2fa + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 3032 + speciesSurveyCode: FMSABED + weightEnabled: true +- !SpeciesProtocol + id: aefb68c4-aa38-40f2-ab3c-decc315d323a + countIfNoFrequencyEnabled: true + speciesReferenceTaxonId: 209 + speciesSurveyCode: FMSERPU + weightEnabled: true +- !SpeciesProtocol + id: 0efd57a3-78d4-4fbf-a36d-aa56773ab7b9 + speciesReferenceTaxonId: 224 + speciesSurveyCode: MBBRYOZ + weightEnabled: true +- !SpeciesProtocol + id: b156dae2-7b88-4709-98c7-23c9b08d028c + speciesReferenceTaxonId: 6222 + speciesSurveyCode: FMPHIDO + weightEnabled: true +- !SpeciesProtocol + id: 2395b690-d950-400f-a030-ccf8a9bee8a4 + speciesReferenceTaxonId: 6669 + speciesSurveyCode: PENPFAS + weightEnabled: true +- !SpeciesProtocol + id: e6c40b05-8c90-421d-9da9-781780e1b813 + speciesReferenceTaxonId: 4762 + speciesSurveyCode: CELL + weightEnabled: true +- !SpeciesProtocol + id: 21e34745-a6ac-40a4-a74c-927e019ae021 + speciesReferenceTaxonId: 3549 + speciesSurveyCode: FLUTFOL + weightEnabled: true +- !SpeciesProtocol + id: c59384b9-b800-4e98-b196-572d6b535d2c + speciesReferenceTaxonId: 3974 + speciesSurveyCode: ALCD + weightEnabled: true +- !SpeciesProtocol + id: 5fc8f39c-bdda-4389-a083-a11165bb0818 + speciesReferenceTaxonId: 4766 + speciesSurveyCode: PORECOM + weightEnabled: true +- 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