Isis-fish-devel

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[annonce] Nouvelle version d'isis-fish 3.0.5
by Benjamin POUSSIN 26 Oct '06

26 Oct '06

Bonjour, Une nouvelle version d'isis-fish vient d'être mise en place : http://isis-fish.labs.libre-entreprise.org/download/version3/isis-fish-3.0.… * bug fix dans la suppression, les contraintes de la base sont forte pour qu'il n'y ait pas d'incoherence, donc il faut supprimer les objets dans le bon ordre, c le cas maintenant * ajout du support pour demander a l'utilisateur s'il souhaite reellement effacer un objet ajout de la liste des objets qui seront effacer avec * amelioration des cles du cache (on utilise plus les objets mais des strings), (gain 80%) * bug fix dans date.getMonth si la date etait negative * bug fix dans le message lorsqu'une equation ne compile pas, maintenant on voit le type de l'equation -- Benjamin -------------------- tél: +33 (0) 2 40 50 29 28 email: poussin(a)codelutin.com () campagne du ruban ascii http://www.codelutin.com /\ pour les mails en ascii

2 2

RDV SVP pour debuggage
by Francois.Bastardie＠ifremer.fr 24 Oct '06

24 Oct '06

Bonjour Benjamin, Sur le conseil de Stéphanie, je t'écris pour te demander s'il serait possible que je viennes 2/3 heures à code lutin pour que je puisse implementer/modifier la base Golfe de Gascogne...en effet je rencontre quelques problèmes avec la version 3 et je crois que je gagnerais beaucoup de temps si je pouvais faire ça dans vos locaux si vous m'autorisez à vous interrompre de temps en temps pour detecter ensemble ce qui cloche dans ce que je veux faire... On pourrait fixer une date dans la semaine? (j'ai un meeting sur le sujet la semaine d'après) Merci d'avance et A+ -- -------------------------------------------------------- François Bastardie French Research Institute for the Development of the Sea (IFREMER) Ecologie et Modèles pour l'Halieutique Rue de l'Ile d'Yeu BP 21105 44311 NANTES Cedex 03 - France Tél : 02 40 37 41 64 Fax : 02 40 37 40 75 E-mail : francois.bastardie(a)ifremer.fr

2 1

tests v3
by Hilaire DROUINEAU 21 Sep '06

21 Sep '06

Salut tout le monde, j'ai fait quelques tests avec la v3 sur la base TemasISIS. Une simu sur 10 ans sans eco prend 118s ! Impressionnant! Par contre j'ai voulu en faire une avec 3 matrices éco (VesselMargin, OwnerMargn, GrossValue) et ça a tourné toute la nuit sans finir... Les logs étaient bizarre mais mon bloc note a planté (trop volumineux) du coup je les ai perdu. en gros y avait que des lignes clean ref in AWT-Queue (où quelque chose de ce goût là... ). J'en ai relancé une autre: la première année est très rapide, par contre ça rame à partir de la seconde (et pourtant je suis pas dans le swap). Ci joint les logs: y ades messages d'erreur que je connais pas dedans. A+ Hilaire -- Hilaire Drouineau IFREMER, département EMH Centre de Nantes - BP 21105 - 44311 Nantes Cedex 3 tel : +33 (0)2 40 37 43 06 - fax : +33 (0)2 40 37 40 75 email : hilaire.drouineau(a)ifremer.fr - web : http://www.ifremer.fr ***************************************************************** AspectWerkz - INFO - Pre-processor org.codehaus.aspectwerkz.transform.AspectWerkzPreProcessor loaded and initialized INFO [main] (IsisFish.java:81) main - Launching Isis-fish ... INFO [main] (IsisConfig.java:296) load - Load configuration from C:\Documents and Settings\hdrouine\.isis-config-3 13 sept. 2006 09:02:58 org.codelutin.i18n.Language <init> INFO: Langue file URL:jar:file:/C:/ISIS-Fish/lib/lutini18n-0.20.jar!/language-fr_FR.properties INFO [main] (MatrixFactory.java:68) <clinit> - Converter XML pour MatrixND ajoute INFO [main] (MatrixFactory.java:85) <clinit> - librairie topia non presente. Import/Export JDBC impossible INFO [main] (XmlBeanDefinitionReader.java:119) loadBeanDefinitions - Loading XML bean definitions from class path resource [fr/ifremer/isisfish/ui/context.xml] INFO [main] (CollectionFactory.java:59) <clinit> - Using JDK 1.4 collections INFO [main] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'application' INFO [main] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'scriptManager' SwixML 1.5 (#144) INFO [main] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'newTags' INFO [main] (Editor.java:116) addEditor - Can't find your editor class: org.codelutin.widget.editor.NetBeansEditor INFO [main] (Editor.java:116) addEditor - Can't find your editor class: org.codelutin.widget.editor.JEditEditor INFO [main] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'SetterFactory' INFO [main] (SwiXMLEngine.java:313) render - 41 components initialized INFO [main] (SwiXMLEngine.java:314) render - 0 components with origin INFO [main] (SwiXMLEngine.java:315) render - Init id time: 0 INFO [main] (SwiXMLEngine.java:316) render - Init component time: 267 INFO [main] (SwiXMLEngine.java:317) render - Refresh view time: 0 INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/exportNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/exportNames' for component javax.swing.JList with id 'listSimulExportChoose' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/ruleNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/ruleNames' for component org.swixat.databinding.JComboBoxModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/preScript' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/preScript' for component javax.swing.JTextArea with id 'fieldSimulPreScript' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/useStatistic' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/useStatistic' for component javax.swing.JCheckBox with id 'fieldSimulationStatistique' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/numberOfYear' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/numberOfYear' for component javax.swing.JTextField with id 'fieldSimulParamsNbAnnees' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/resultEnabled' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/resultEnabled' for component javax.swing.JList with id 'listResultNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/useOptimization' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/useOptimization' for component javax.swing.JCheckBox with id 'fieldSimulationCache' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/simulatorName' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/simulatorName' for component javax.swing.JComboBox with id 'fieldSimulAdvParamsSimulatorSelect' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/rules' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/rules' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/fisheryRegion/species/population' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/fisheryRegion/species/population' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/populations' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/populations' for component javax.swing.JList with id 'listSimulParamsPopulations' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path 'entrySet($SimulationParameter/tagValue)' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin 'entrySet($SimulationParameter/tagValue)' for component org.swixat.databinding.JTableModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/strategies' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/strategies' for component javax.swing.JList with id 'listSimulParamsStrategies' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/onlyExport' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/onlyExport' for component javax.swing.JCheckBox with id 'fieldSimulOnlyExport' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/description' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/description' for component javax.swing.JTextArea with id 'fieldSimulParamsDesc' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/fisheryRegion/strategy' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/fisheryRegion/strategy' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/useAnalysePlan' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/useAnalysePlan' for component javax.swing.JCheckBox with id 'fieldSimulUseAnalysePlan' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (ResultNames) in path '$ResultNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$ResultNames' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/local' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/local' for component javax.swing.JCheckBox with id 'fieldSimulAdvParamsSimulatorLocal' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/exportDirectory' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/exportDirectory' for component javax.swing.JTextField with id 'fieldSimulExportFolder' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/regionName' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/regionName' for component javax.swing.JComboBox with id 'fieldSimulParamsRegion' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/usePreScript' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/usePreScript' for component javax.swing.JCheckBox with id 'fieldUseSimulPreScripts' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:313) render - 288 components initialized INFO [AWT-EventQueue-0] (SwiXMLEngine.java:314) render - 36 components with origin INFO [AWT-EventQueue-0] (SwiXMLEngine.java:315) render - Init id time: 16 INFO [AWT-EventQueue-0] (SwiXMLEngine.java:316) render - Init component time: 63 INFO [AWT-EventQueue-0] (SwiXMLEngine.java:317) render - Refresh view time: 346 INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/ruleNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/ruleNames' for component org.swixat.databinding.JComboBoxModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/fisheryRegion/species/population' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/fisheryRegion/species/population' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/fisheryRegion/strategy' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/fisheryRegion/strategy' for component org.swixat.databinding.JListModel with id 'null' INFO [Thread-3] (RegionStorage.java:253) getRegion - Try to open region ComparaisonTemasIsis(C:\ISIS-Fish\src\isis-fish-data\regions\ComparaisonTemasIsis) WARN [AWT-EventQueue-0] (TopiaContextImpl.java:1389) initSecurityType - Type de sécurité inconnu : null INFO [AWT-EventQueue-0] (Environment.java:499) <clinit> - Hibernate 3.2 cr2 INFO [AWT-EventQueue-0] (Environment.java:532) <clinit> - hibernate.properties not found INFO [AWT-EventQueue-0] (Environment.java:666) buildBytecodeProvider - Bytecode provider name : cglib INFO [AWT-EventQueue-0] (Environment.java:583) <clinit> - using JDK 1.4 java.sql.Timestamp handling INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/StrategyMonthInfoImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.StrategyMonthInfoImpl -> strategymonthinfo INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/GearImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.GearImpl -> gear INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SetOfVesselsImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SetOfVesselsImpl -> setofvessels INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/EffortDescriptionImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.EffortDescriptionImpl -> effortdescription INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/FisheryRegionImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.FisheryRegionImpl -> fisheryregion INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationSeasonInfoImpl.hbm.xml INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SeasonImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SeasonImpl -> season INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PortImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PortImpl -> port INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SelectivityImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SelectivityImpl -> selectivity INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/TargetSpeciesImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.TargetSpeciesImpl -> targetspecies INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/CellImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.CellImpl -> cell INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ActiveRuleImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ActiveRuleImpl -> activerule INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ResultImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ResultImpl -> result INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/EquationImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.EquationImpl -> equation INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/MetierSeasonInfoImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:795) bindUnionSubclass - Mapping union-subclass: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl -> metierseasoninfo INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl.zone -> metierseasoninfo_zone INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PopulationImpl -> population INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.reproductionZone -> population_reproductionzone INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationZone -> population_populationzone INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.recruitmentZone -> population_recruitmentzone INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/StrategyImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.StrategyImpl -> strategy INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationGroupImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PopulationGroupImpl -> populationgroup INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/TripTypeImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.TripTypeImpl -> triptype INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/VesselTypeImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.VesselTypeImpl -> vesseltype INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.VesselTypeImpl.tripType -> triptype_vesseltype INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SpeciesImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SpeciesImpl -> species INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/MetierImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.MetierImpl -> metier INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ZoneImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ZoneImpl -> zone INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.ZoneImpl.cell -> cell_zone INFO [AWT-EventQueue-0] (HbmBinder.java:795) bindUnionSubclass - Mapping union-subclass: fr.ifremer.isisfish.entities.PopulationSeasonInfoImpl -> populationseasoninfo INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.GearImpl.populationSelectivity -> selectivity INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.SetOfVesselsImpl.possibleMetiers -> effortdescription INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl.speciesTargetSpecies -> targetspecies INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationGroup -> populationgroup INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationSeasonInfo -> populationseasoninfo INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.StrategyImpl.strategyMonthInfo -> strategymonthinfo INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.SpeciesImpl.population -> population INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.MetierImpl.metierSeasonInfo -> metierseasoninfo INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:41) configure - Using Hibernate built-in connection pool (not for production use!) INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:42) configure - Hibernate connection pool size: 20 INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:45) configure - autocommit mode: false INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:80) configure - using driver: org.h2.Driver at URL: jdbc:h2:file:C:\ISIS-Fish\src\isis-fish-data\regions\ComparaisonTemasIsis\data\data;FILE_LOCK=socket;MODE=hsqldb;DEFAULT_LOCK_TIMEOUT=5000;ASSERT=0;DB_CLOSE_DELAY=-1;LOCK_MODE=2;LOG=1;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=1 INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:86) configure - connection properties: {user=sa, password=****} INFO [AWT-EventQueue-0] (SettingsFactory.java:78) buildSettings - RDBMS: H2, version: 1.0 (2006-08-31) INFO [AWT-EventQueue-0] (SettingsFactory.java:79) buildSettings - JDBC driver: H2 JDBC Driver, version: 1.0 (2006-08-31) INFO [AWT-EventQueue-0] (Dialect.java:141) <init> - Using dialect: org.hibernate.dialect.HSQLDialect INFO [AWT-EventQueue-0] (TransactionFactoryFactory.java:31) buildTransactionFactory - Using default transaction strategy (direct JDBC transactions) INFO [AWT-EventQueue-0] (TransactionManagerLookupFactory.java:33) getTransactionManagerLookup - No TransactionManagerLookup configured (in JTA environment, use of read-write or transactional second-level cache is not recommended) INFO [AWT-EventQueue-0] (SettingsFactory.java:126) buildSettings - Automatic flush during beforeCompletion(): disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:130) buildSettings - Automatic session close at end of transaction: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:137) buildSettings - JDBC batch size: 15 INFO [AWT-EventQueue-0] (SettingsFactory.java:140) buildSettings - JDBC batch updates for versioned data: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:145) buildSettings - Scrollable result sets: enabled INFO [AWT-EventQueue-0] (SettingsFactory.java:153) buildSettings - JDBC3 getGeneratedKeys(): enabled INFO [AWT-EventQueue-0] (SettingsFactory.java:161) buildSettings - Connection release mode: auto INFO [AWT-EventQueue-0] (SettingsFactory.java:188) buildSettings - Default batch fetch size: 1 INFO [AWT-EventQueue-0] (SettingsFactory.java:192) buildSettings - Generate SQL with comments: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:196) buildSettings - Order SQL updates by primary key: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:357) createQueryTranslatorFactory - Query translator: org.hibernate.hql.ast.ASTQueryTranslatorFactory INFO [AWT-EventQueue-0] (ASTQueryTranslatorFactory.java:24) <init> - Using ASTQueryTranslatorFactory INFO [AWT-EventQueue-0] (SettingsFactory.java:204) buildSettings - Query language substitutions: {} INFO [AWT-EventQueue-0] (SettingsFactory.java:210) buildSettings - Second-level cache: enabled INFO [AWT-EventQueue-0] (SettingsFactory.java:214) buildSettings - Query cache: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:344) createCacheProvider - Cache provider: org.hibernate.cache.EhCacheProvider INFO [AWT-EventQueue-0] (SettingsFactory.java:229) buildSettings - Optimize cache for minimal puts: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:238) buildSettings - Structured second-level cache entries: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:265) buildSettings - Statistics: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:269) buildSettings - Deleted entity synthetic identifier rollback: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:284) buildSettings - Default entity-mode: pojo INFO [AWT-EventQueue-0] (SessionFactoryImpl.java:161) <init> - building session factory WARN [AWT-EventQueue-0] (ConfigurationFactory.java:127) parseConfiguration - No configuration found. Configuring ehcache from ehcache-failsafe.xml found in the classpath: jar:file:/C:/ISIS-Fish/lib/ehcache-1.2.1RC.jar!/ehcache-failsafe.xml INFO [AWT-EventQueue-0] (SessionFactoryObjectFactory.java:82) addInstance - Not binding factory to JNDI, no JNDI name configured INFO [AWT-EventQueue-0] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [AWT-EventQueue-0] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [AWT-EventQueue-0] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [AWT-EventQueue-0] (TopiaContextImpl.java:1140) fireOnCommited - onCommited **** false *****0 INFO [SimulationQueueThread local] (SimulationThread.java:125) <init> - backup database for simulation in C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158131055084-ecotrois\region.xml Exception in thread "AWT-EventQueue-0" org.apache.commons.jxpath.JXPathException: Undefined variable: SimulationLaunched at org.apache.commons.jxpath.ri.model.VariablePointer$1.getImmediateNode(VariablePointer.java:123) at org.apache.commons.jxpath.ri.model.NodePointer.getNode(NodePointer.java:305) at org.apache.commons.jxpath.ri.model.NodePointer.getValue(NodePointer.java:217) at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getValue(JXPathContextReferenceImpl.java:347) at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getValue(JXPathContextReferenceImpl.java:280) at org.swixat.framework.action.HandleClassMethodAction.computeArgument(HandleClassMethodAction.java:276) at org.swixat.framework.action.HandleClassMethodAction.invoke(HandleClassMethodAction.java:196) at org.swixat.framework.action.HandleClassMethodAction.handleClassMethod(HandleClassMethodAction.java:145) at org.swixat.framework.action.HandleClassMethodAction.doCommand(HandleClassMethodAction.java:89) at org.swixat.framework.action.ActionManager.doCommand(ActionManager.java:99) at org.swixat.framework.AbstractFrame.executeCommand(AbstractFrame.java:148) at org.swixat.framework.AbstractFrame.actionPerformed(AbstractFrame.java:95) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1849) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2169) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:420) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:258) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) at java.awt.Component.processMouseEvent(Component.java:5488) at javax.swing.JComponent.processMouseEvent(JComponent.java:3126) at java.awt.Component.processEvent(Component.java:5253) at java.awt.Container.processEvent(Container.java:1966) at java.awt.Component.dispatchEventImpl(Component.java:3955) at java.awt.Container.dispatchEventImpl(Container.java:2024) at java.awt.Component.dispatchEvent(Component.java:3803) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4212) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:3892) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:3822) at java.awt.Container.dispatchEventImpl(Container.java:2010) at java.awt.Window.dispatchEventImpl(Window.java:1778) at java.awt.Component.dispatchEvent(Component.java:3803) at java.awt.EventQueue.dispatchEvent(EventQueue.java:463) at java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:242) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:163) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:157) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:149) at java.awt.EventDispatchThread.run(EventDispatchThread.java:110) INFO [SimulationQueueThread local] (SimulationThread.java:131) <init> - backup database finished for simulation in C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158131055084-ecotrois\region.xml DEBUG [SimulationQueueThread local] (FileUtil.java:567) copyRecursively - copyRecursively: [] DEBUG [SimulationQueueThread local] (FileUtil.java:567) copyRecursively - copyRecursively: [C:\ISIS-Fish\src\isis-fish-data\exports\CVS, C:\ISIS-Fish\src\isis-fish-data\exports\CVS\Entries, C:\ISIS-Fish\src\isis-fish-data\exports\CVS\Repository, C:\ISIS-Fish\src\isis-fish-data\exports\CVS\Root, C:\ISIS-Fish\src\isis-fish-data\exports\CVS\Template] DEBUG [SimulationQueueThread local] (FileUtil.java:567) copyRecursively - copyRecursively: [C:\ISIS-Fish\src\isis-fish-data\scripts\CVS, C:\ISIS-Fish\src\isis-fish-data\scripts\GravityModel.java, C:\ISIS-Fish\src\isis-fish-data\scripts\ResultName.java, C:\ISIS-Fish\src\isis-fish-data\scripts\SiMatrix.java, C:\ISIS-Fish\src\isis-fish-data\scripts\CVS\Entries, C:\ISIS-Fish\src\isis-fish-data\scripts\CVS\Repository, C:\ISIS-Fish\src\isis-fish-data\scripts\CVS\Root, C:\ISIS-Fish\src\isis-fish-data\scripts\CVS\Template] DEBUG [SimulationQueueThread local] (FileUtil.java:576) copyRecursively - copy \scripts\GravityModel.java to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158131055084-ecotrois\scripts\GravityModel.java DEBUG [SimulationQueueThread local] (FileUtil.java:576) copyRecursively - copy \scripts\ResultName.java to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158131055084-ecotrois\scripts\ResultName.java DEBUG [SimulationQueueThread local] (FileUtil.java:576) copyRecursively - copy \scripts\SiMatrix.java to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158131055084-ecotrois\scripts\SiMatrix.java DEBUG [SimulationQueueThread local] (FileUtil.java:567) copyRecursively - copyRecursively: [C:\ISIS-Fish\src\isis-fish-data\simulators\CVS, C:\ISIS-Fish\src\isis-fish-data\simulators\DefaultSimulator.java, C:\ISIS-Fish\src\isis-fish-data\simulators\CVS\Entries, C:\ISIS-Fish\src\isis-fish-data\simulators\CVS\Repository, C:\ISIS-Fish\src\isis-fish-data\simulators\CVS\Root, C:\ISIS-Fish\src\isis-fish-data\simulators\CVS\Template] DEBUG [SimulationQueueThread local] (FileUtil.java:576) copyRecursively - copy \simulators\DefaultSimulator.java to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158131055084-ecotrois\simulators\DefaultSimulator.java Note: C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158131055084-ecotrois\scripts\SiMatrix.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. INFO [SimulationQueueThread local] (SimulationThread.java:173) <init> - Comilation time 19.494s INFO [SimulationQueueThread local] (SimulationThread.java:179) <init> - Classloader used for simulation: java.net.URLClassLoader@3d5149 INFO [SimulationThread ecotrois] (SimulationThread.java:191) run - Simulation thread Thread[SimulationThread ecotrois,6,main] starting at 13/09/06 09:04 (Memoire libre/Memoire Total = 222 607 288/266 469 376) INFO [SimulationThread ecotrois] (SimulationThread.java:221) runLocalSimulation - Mise en place des aspects Trace Deployer::INFO - deploying aspect [fr.ifremer.isisfish.aspect.Trace] in class loader [java.net.URLClassLoader@3d5149] INFO [SimulationThread ecotrois] (SimulationThread.java:225) runLocalSimulation - Mise en place des aspects Cache Deployer::INFO - deploying aspect [fr.ifremer.isisfish.aspect.Cache] in class loader [java.net.URLClassLoader@3d5149] WARN [SimulationThread ecotrois] (TopiaContextImpl.java:1389) initSecurityType - Type de sécurité inconnu : null INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/StrategyMonthInfoImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.StrategyMonthInfoImpl -> strategymonthinfo INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/GearImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.GearImpl -> gear INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SetOfVesselsImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SetOfVesselsImpl -> setofvessels INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/EffortDescriptionImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.EffortDescriptionImpl -> effortdescription INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/FisheryRegionImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.FisheryRegionImpl -> fisheryregion INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationSeasonInfoImpl.hbm.xml INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SeasonImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SeasonImpl -> season INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PortImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PortImpl -> port INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SelectivityImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SelectivityImpl -> selectivity INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/TargetSpeciesImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.TargetSpeciesImpl -> targetspecies INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/CellImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.CellImpl -> cell INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ActiveRuleImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ActiveRuleImpl -> activerule INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ResultImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ResultImpl -> result INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/EquationImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.EquationImpl -> equation INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/MetierSeasonInfoImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:795) bindUnionSubclass - Mapping union-subclass: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl -> metierseasoninfo INFO [SimulationThread ecotrois] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl.zone -> metierseasoninfo_zone INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PopulationImpl -> population INFO [SimulationThread ecotrois] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.reproductionZone -> population_reproductionzone INFO [SimulationThread ecotrois] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationZone -> population_populationzone INFO [SimulationThread ecotrois] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.recruitmentZone -> population_recruitmentzone INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/StrategyImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.StrategyImpl -> strategy INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationGroupImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PopulationGroupImpl -> populationgroup INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/TripTypeImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.TripTypeImpl -> triptype INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/VesselTypeImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.VesselTypeImpl -> vesseltype INFO [SimulationThread ecotrois] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.VesselTypeImpl.tripType -> triptype_vesseltype INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SpeciesImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SpeciesImpl -> species INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/MetierImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.MetierImpl -> metier INFO [SimulationThread ecotrois] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ZoneImpl.hbm.xml INFO [SimulationThread ecotrois] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ZoneImpl -> zone INFO [SimulationThread ecotrois] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.ZoneImpl.cell -> cell_zone INFO [SimulationThread ecotrois] (HbmBinder.java:795) bindUnionSubclass - Mapping union-subclass: fr.ifremer.isisfish.entities.PopulationSeasonInfoImpl -> populationseasoninfo INFO [SimulationThread ecotrois] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.GearImpl.populationSelectivity -> selectivity INFO [SimulationThread ecotrois] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.SetOfVesselsImpl.possibleMetiers -> effortdescription INFO [SimulationThread ecotrois] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl.speciesTargetSpecies -> targetspecies INFO [SimulationThread ecotrois] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationGroup -> populationgroup INFO [SimulationThread ecotrois] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationSeasonInfo -> populationseasoninfo INFO [SimulationThread ecotrois] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.StrategyImpl.strategyMonthInfo -> strategymonthinfo INFO [SimulationThread ecotrois] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.SpeciesImpl.population -> population INFO [SimulationThread ecotrois] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.MetierImpl.metierSeasonInfo -> metierseasoninfo INFO [SimulationThread ecotrois] (DriverManagerConnectionProvider.java:41) configure - Using Hibernate built-in connection pool (not for production use!) INFO [SimulationThread ecotrois] (DriverManagerConnectionProvider.java:42) configure - Hibernate connection pool size: 20 INFO [SimulationThread ecotrois] (DriverManagerConnectionProvider.java:45) configure - autocommit mode: false INFO [SimulationThread ecotrois] (DriverManagerConnectionProvider.java:80) configure - using driver: org.h2.Driver at URL: jdbc:h2:file:C:\ISIS-Fish\src\isis-fish-data\simulations\ecotrois\data\data;FILE_LOCK=socket;MODE=hsqldb;DEFAULT_LOCK_TIMEOUT=5000;ASSERT=0;DB_CLOSE_DELAY=-1;LOCK_MODE=2;LOG=1;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=1 INFO [SimulationThread ecotrois] (DriverManagerConnectionProvider.java:86) configure - connection properties: {user=sa, password=****} INFO [SimulationThread ecotrois] (SettingsFactory.java:78) buildSettings - RDBMS: H2, version: 1.0 (2006-08-31) INFO [SimulationThread ecotrois] (SettingsFactory.java:79) buildSettings - JDBC driver: H2 JDBC Driver, version: 1.0 (2006-08-31) INFO [SimulationThread ecotrois] (Dialect.java:141) <init> - Using dialect: org.hibernate.dialect.HSQLDialect INFO [SimulationThread ecotrois] (TransactionFactoryFactory.java:31) buildTransactionFactory - Using default transaction strategy (direct JDBC transactions) INFO [SimulationThread ecotrois] (TransactionManagerLookupFactory.java:33) getTransactionManagerLookup - No TransactionManagerLookup configured (in JTA environment, use of read-write or transactional second-level cache is not recommended) INFO [SimulationThread ecotrois] (SettingsFactory.java:126) buildSettings - Automatic flush during beforeCompletion(): disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:130) buildSettings - Automatic session close at end of transaction: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:137) buildSettings - JDBC batch size: 15 INFO [SimulationThread ecotrois] (SettingsFactory.java:140) buildSettings - JDBC batch updates for versioned data: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:145) buildSettings - Scrollable result sets: enabled INFO [SimulationThread ecotrois] (SettingsFactory.java:153) buildSettings - JDBC3 getGeneratedKeys(): enabled INFO [SimulationThread ecotrois] (SettingsFactory.java:161) buildSettings - Connection release mode: auto INFO [SimulationThread ecotrois] (SettingsFactory.java:188) buildSettings - Default batch fetch size: 1 INFO [SimulationThread ecotrois] (SettingsFactory.java:192) buildSettings - Generate SQL with comments: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:196) buildSettings - Order SQL updates by primary key: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:357) createQueryTranslatorFactory - Query translator: org.hibernate.hql.ast.ASTQueryTranslatorFactory INFO [SimulationThread ecotrois] (ASTQueryTranslatorFactory.java:24) <init> - Using ASTQueryTranslatorFactory INFO [SimulationThread ecotrois] (SettingsFactory.java:204) buildSettings - Query language substitutions: {} INFO [SimulationThread ecotrois] (SettingsFactory.java:210) buildSettings - Second-level cache: enabled INFO [SimulationThread ecotrois] (SettingsFactory.java:214) buildSettings - Query cache: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:344) createCacheProvider - Cache provider: org.hibernate.cache.EhCacheProvider INFO [SimulationThread ecotrois] (SettingsFactory.java:229) buildSettings - Optimize cache for minimal puts: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:238) buildSettings - Structured second-level cache entries: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:265) buildSettings - Statistics: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:269) buildSettings - Deleted entity synthetic identifier rollback: disabled INFO [SimulationThread ecotrois] (SettingsFactory.java:284) buildSettings - Default entity-mode: pojo INFO [SimulationThread ecotrois] (SessionFactoryImpl.java:161) <init> - building session factory WARN [SimulationThread ecotrois] (ConfigurationFactory.java:127) parseConfiguration - No configuration found. Configuring ehcache from ehcache-failsafe.xml found in the classpath: jar:file:/C:/ISIS-Fish/lib/ehcache-1.2.1RC.jar!/ehcache-failsafe.xml WARN [SimulationThread ecotrois] (CacheManager.java:276) detectAndFixDiskStorePathConflict - Creating a new instance of CacheManager using the diskStorePath "C:\DOCUME~1\hdrouine\LOCALS~1\Temp\" which is already used by an existing CacheManager. The source of the configuration was classpath. The diskStore path for this CacheManager will be set to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\\ehcache_auto_created_1158131077091. To avoid this warning consider using the CacheManager factory methods to create a singleton CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager instance. INFO [SimulationThread ecotrois] (SessionFactoryObjectFactory.java:82) addInstance - Not binding factory to JNDI, no JNDI name configured INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (SimulatorHelper.java:123) simulate - Simulation execution INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread ecotrois] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [AWT-EventQueue-0] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'exit' 09-13 09:10:45 jdbc[0]: Uncaught Exception 09-13 09:10:45 jdbc[0]: Uncaught Exception WARN [SimulationThread ecotrois] (JDBCExceptionReporter.java:71) logExceptions - SQL Error: 50000, SQLState: HY000 ERROR [SimulationThread ecotrois] (JDBCExceptionReporter.java:72) logExceptions - General error: java.lang.NullPointerException [HY000-25] WARN [SimulationThread ecotrois] (ResultStorage.java:241) getMatrix - Can't return matrix 'matrixCatchWeightPerStrategyMet Sole' for date may 1 org.codelutin.topia.TopiaException: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:181) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.findByProperties(TopiaDAOHibernate.java:142) at org.codelutin.topia.persistence.TopiaDAOAbstract.findByProperties(TopiaDAOAbstract.java:383) at org.codelutin.topia.persistence.TopiaDAODelegator.findByProperties(TopiaDAODelegator.java:185) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:235) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:216) at scripts.GravityModel.aw$original$_AW_$getCatchWeightPerStrMet$_AW_$scripts_GravityModel(GravityModel.java:494) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.getCatchWeightPerStrMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerSpeciesPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:476) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerSpeciesPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:555) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:638) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:686) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netRenevueToSharePerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:730) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netRenevueToSharePerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:824) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:912) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$matrixOwnerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:888) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.matrixOwnerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at simulators.DefaultSimulator.aw$original$_AW_$saveGravityModel$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:428) at simulators.DefaultSimulator_1__1242956842_1239655192___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.saveGravityModel(DefaultSimulator.java) at simulators.DefaultSimulator.aw$original$_AW_$simulate$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:234) at simulators.DefaultSimulator_1_869596014__1739552001___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.simulate(DefaultSimulator.java) at fr.ifremer.isisfish.simulator.SimulatorHelper.simulate(SimulatorHelper.java:130) at fr.ifremer.isisfish.simulator.SimulationThread.runLocalSimulation(SimulationThread.java:244) at fr.ifremer.isisfish.simulator.SimulationThread.run(SimulationThread.java:197) Caused by: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:420) at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144) at org.hibernate.jdbc.AbstractBatcher.prepareQueryStatement(AbstractBatcher.java:139) at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1561) at org.hibernate.loader.Loader.doQuery(Loader.java:661) at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:224) at org.hibernate.loader.Loader.doList(Loader.java:2145) at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2029) at org.hibernate.loader.Loader.list(Loader.java:2024) at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:95) at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1562) at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:283) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:175) ... 77 more Caused by: org.h2.jdbc.JdbcSQLException: General error: java.lang.NullPointerException [HY000-25] at org.h2.message.Message.getSQLException(Message.java:67) at org.h2.message.Message.convert(Message.java:347) at org.h2.message.TraceObject.logAndConvert(TraceObject.java:168) at org.h2.jdbc.JdbcConnection.getAutoCommit(JdbcConnection.java:292) at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:104) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417) ... 89 more WARN [SimulationThread ecotrois] (JDBCExceptionReporter.java:71) logExceptions - SQL Error: 50000, SQLState: HY000 ERROR [SimulationThread ecotrois] (JDBCExceptionReporter.java:72) logExceptions - General error: java.lang.IllegalStateException: Shutdown in progress [HY000-25] WARN [SimulationThread ecotrois] (ResultStorage.java:241) getMatrix - Can't return matrix 'matrixDiscardsWeightPerStrMet Sole' for date may 1 org.codelutin.topia.TopiaException: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:181) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.findByProperties(TopiaDAOHibernate.java:142) at org.codelutin.topia.persistence.TopiaDAOAbstract.findByProperties(TopiaDAOAbstract.java:383) at org.codelutin.topia.persistence.TopiaDAODelegator.findByProperties(TopiaDAODelegator.java:185) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:235) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:216) at scripts.GravityModel.aw$original$_AW_$getDiscardsWeightPerStrMet$_AW_$scripts_GravityModel(GravityModel.java:511) at scripts.GravityModel_1_1958420743__2081663218___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_1958420743__2081663218___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_1958420743__2081663218___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.getDiscardsWeightPerStrMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerSpeciesPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:477) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerSpeciesPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:555) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:638) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:686) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netRenevueToSharePerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:730) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netRenevueToSharePerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:824) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:912) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$matrixOwnerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:888) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.matrixOwnerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at simulators.DefaultSimulator.aw$original$_AW_$saveGravityModel$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:428) at simulators.DefaultSimulator_1__1242956842_1239655192___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.saveGravityModel(DefaultSimulator.java) at simulators.DefaultSimulator.aw$original$_AW_$simulate$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:234) at simulators.DefaultSimulator_1_869596014__1739552001___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.simulate(DefaultSimulator.java) at fr.ifremer.isisfish.simulator.SimulatorHelper.simulate(SimulatorHelper.java:130) at fr.ifremer.isisfish.simulator.SimulationThread.runLocalSimulation(SimulationThread.java:244) at fr.ifremer.isisfish.simulator.SimulationThread.run(SimulationThread.java:197) Caused by: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:420) at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144) at org.hibernate.jdbc.AbstractBatcher.prepareQueryStatement(AbstractBatcher.java:139) at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1561) at org.hibernate.loader.Loader.doQuery(Loader.java:661) at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:224) at org.hibernate.loader.Loader.doList(Loader.java:2145) at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2029) at org.hibernate.loader.Loader.list(Loader.java:2024) at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:95) at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1562) at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:283) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:175) ... 77 more Caused by: org.h2.jdbc.JdbcSQLException: General error: java.lang.IllegalStateException: Shutdown in progress [HY000-25] at org.h2.message.Message.getSQLException(Message.java:67) at org.h2.message.Message.convert(Message.java:347) at org.h2.message.TraceObject.logAndConvert(TraceObject.java:168) at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:907) at org.h2.Driver.connect(Driver.java:44) at java.sql.DriverManager.getConnection(DriverManager.java:525) at java.sql.DriverManager.getConnection(DriverManager.java:140) at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:110) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417) ... 89 more 09-13 09:10:46 database: opening C:\ISIS-Fish\src\isis-fish-data\simulations\ecotrois\data\data WARN [SimulationThread ecotrois] (JDBCExceptionReporter.java:71) logExceptions - SQL Error: 90020, SQLState: 90020 ERROR [SimulationThread ecotrois] (JDBCExceptionReporter.java:72) logExceptions - Database may be already open: Locked by another process [90020-25] WARN [SimulationThread ecotrois] (ResultStorage.java:241) getMatrix - Can't return matrix 'matrixCatchWeightPerStrategyMet Sole' for date may 1 org.codelutin.topia.TopiaException: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:181) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.findByProperties(TopiaDAOHibernate.java:142) at org.codelutin.topia.persistence.TopiaDAOAbstract.findByProperties(TopiaDAOAbstract.java:383) at org.codelutin.topia.persistence.TopiaDAODelegator.findByProperties(TopiaDAODelegator.java:185) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:235) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:216) at scripts.GravityModel.aw$original$_AW_$getCatchWeightPerStrMet$_AW_$scripts_GravityModel(GravityModel.java:494) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.getCatchWeightPerStrMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerSpeciesPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:476) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerSpeciesPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:555) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:638) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:686) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netRenevueToSharePerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:730) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netRenevueToSharePerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:824) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:912) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$matrixOwnerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:888) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.matrixOwnerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at simulators.DefaultSimulator.aw$original$_AW_$saveGravityModel$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:428) at simulators.DefaultSimulator_1__1242956842_1239655192___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.saveGravityModel(DefaultSimulator.java) at simulators.DefaultSimulator.aw$original$_AW_$simulate$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:234) at simulators.DefaultSimulator_1_869596014__1739552001___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.simulate(DefaultSimulator.java) at fr.ifremer.isisfish.simulator.SimulatorHelper.simulate(SimulatorHelper.java:130) at fr.ifremer.isisfish.simulator.SimulationThread.runLocalSimulation(SimulationThread.java:244) at fr.ifremer.isisfish.simulator.SimulationThread.run(SimulationThread.java:197) Caused by: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:420) at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144) at org.hibernate.jdbc.AbstractBatcher.prepareQueryStatement(AbstractBatcher.java:139) at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1561) at org.hibernate.loader.Loader.doQuery(Loader.java:661) at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:224) at org.hibernate.loader.Loader.doList(Loader.java:2145) at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2029) at org.hibernate.loader.Loader.list(Loader.java:2024) at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:95) at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1562) at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:283) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:175) ... 77 more Caused by: org.h2.jdbc.JdbcSQLException: Database may be already open: Locked by another process [90020-25] at org.h2.message.Message.getSQLException(Message.java:67) at org.h2.message.Message.getSQLException(Message.java:49) at org.h2.store.FileLock.error(FileLock.java:308) at org.h2.store.FileLock.lockSocket(FileLock.java:246) at org.h2.store.FileLock.lock(FileLock.java:61) at org.h2.engine.Database.open(Database.java:401) at org.h2.engine.Database.<init>(Database.java:364) at org.h2.engine.Engine.getSession(Engine.java:57) at org.h2.engine.Session.createSession(Session.java:138) at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:894) at org.h2.Driver.connect(Driver.java:44) at java.sql.DriverManager.getConnection(DriverManager.java:525) at java.sql.DriverManager.getConnection(DriverManager.java:140) at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:110) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417) ... 89 more

3 4

(aucun objet)
by Hilaire DROUINEAU 13 Sep '06

13 Sep '06

Salut, ci-joint des logs d'une simu que j'ai coupé en avril 3 d'une simu avec 3 résultats écos... A+ Hilaire -- Hilaire Drouineau IFREMER, département EMH Centre de Nantes - BP 21105 - 44311 Nantes Cedex 3 tel : +33 (0)2 40 37 43 06 - fax : +33 (0)2 40 37 40 75 email : hilaire.drouineau(a)ifremer.fr - web : http://www.ifremer.fr ***************************************************************** AspectWerkz - INFO - Pre-processor org.codehaus.aspectwerkz.transform.AspectWerkzPreProcessor loaded and initialized INFO [main] (IsisFish.java:81) main - Launching Isis-fish ... INFO [main] (IsisConfig.java:296) load - Load configuration from C:\Documents and Settings\hdrouine\.isis-config-3 13 sept. 2006 09:22:53 org.codelutin.i18n.Language <init> INFO: Langue file URL:jar:file:/C:/ISIS-Fish/lib/lutini18n-0.20.jar!/language-fr_FR.properties INFO [main] (MatrixFactory.java:68) <clinit> - Converter XML pour MatrixND ajoute INFO [main] (MatrixFactory.java:85) <clinit> - librairie topia non presente. Import/Export JDBC impossible INFO [main] (XmlBeanDefinitionReader.java:119) loadBeanDefinitions - Loading XML bean definitions from class path resource [fr/ifremer/isisfish/ui/context.xml] INFO [main] (CollectionFactory.java:59) <clinit> - Using JDK 1.4 collections INFO [main] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'application' INFO [main] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'scriptManager' SwixML 1.5 (#144) INFO [main] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'newTags' INFO [main] (Editor.java:116) addEditor - Can't find your editor class: org.codelutin.widget.editor.NetBeansEditor INFO [main] (Editor.java:116) addEditor - Can't find your editor class: org.codelutin.widget.editor.JEditEditor INFO [main] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'SetterFactory' INFO [main] (SwiXMLEngine.java:313) render - 41 components initialized INFO [main] (SwiXMLEngine.java:314) render - 0 components with origin INFO [main] (SwiXMLEngine.java:315) render - Init id time: 0 INFO [main] (SwiXMLEngine.java:316) render - Init component time: 204 INFO [main] (SwiXMLEngine.java:317) render - Refresh view time: 0 INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/populations' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/populations' for component javax.swing.JList with id 'listSimulParamsPopulations' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/rules' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/rules' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/exportNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/exportNames' for component javax.swing.JList with id 'listSimulExportChoose' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/numberOfYear' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/numberOfYear' for component javax.swing.JTextField with id 'fieldSimulParamsNbAnnees' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/usePreScript' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/usePreScript' for component javax.swing.JCheckBox with id 'fieldUseSimulPreScripts' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/resultEnabled' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/resultEnabled' for component javax.swing.JList with id 'listResultNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/useStatistic' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/useStatistic' for component javax.swing.JCheckBox with id 'fieldSimulationStatistique' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/ruleNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/ruleNames' for component org.swixat.databinding.JComboBoxModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/regionName' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/regionName' for component javax.swing.JComboBox with id 'fieldSimulParamsRegion' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/simulatorName' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/simulatorName' for component javax.swing.JComboBox with id 'fieldSimulAdvParamsSimulatorSelect' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/fisheryRegion/strategy' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/fisheryRegion/strategy' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/strategies' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/strategies' for component javax.swing.JList with id 'listSimulParamsStrategies' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/useAnalysePlan' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/useAnalysePlan' for component javax.swing.JCheckBox with id 'fieldSimulUseAnalysePlan' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/fisheryRegion/species/population' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/fisheryRegion/species/population' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/description' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/description' for component javax.swing.JTextArea with id 'fieldSimulParamsDesc' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/preScript' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/preScript' for component javax.swing.JTextArea with id 'fieldSimulPreScript' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path 'entrySet($SimulationParameter/tagValue)' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin 'entrySet($SimulationParameter/tagValue)' for component org.swixat.databinding.JTableModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/exportDirectory' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/exportDirectory' for component javax.swing.JTextField with id 'fieldSimulExportFolder' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/local' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/local' for component javax.swing.JCheckBox with id 'fieldSimulAdvParamsSimulatorLocal' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (ResultNames) in path '$ResultNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$ResultNames' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/onlyExport' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/onlyExport' for component javax.swing.JCheckBox with id 'fieldSimulOnlyExport' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (SimulationParameter) in path '$SimulationParameter/useOptimization' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$SimulationParameter/useOptimization' for component javax.swing.JCheckBox with id 'fieldSimulationCache' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:313) render - 288 components initialized INFO [AWT-EventQueue-0] (SwiXMLEngine.java:314) render - 36 components with origin INFO [AWT-EventQueue-0] (SwiXMLEngine.java:315) render - Init id time: 0 INFO [AWT-EventQueue-0] (SwiXMLEngine.java:316) render - Init component time: 63 INFO [AWT-EventQueue-0] (SwiXMLEngine.java:317) render - Refresh view time: 234 INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/fisheryRegion/species/population' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/fisheryRegion/species/population' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/ruleNames' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/ruleNames' for component org.swixat.databinding.JComboBoxModel with id 'null' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:548) extractReferences - Uninitilised variable (RegionStorage) in path '$RegionStorage/fisheryRegion/strategy' INFO [AWT-EventQueue-0] (SwiXMLEngine.java:690) setComponent - Use setNullProperty because there are one or more uninitilised variable in origin '$RegionStorage/fisheryRegion/strategy' for component org.swixat.databinding.JListModel with id 'null' INFO [AWT-EventQueue-0] (SimulationStorage.java:151) getSimulation - Try to open simulation ecotrois(C:\ISIS-Fish\src\isis-fish-data\simulations\ecotrois) INFO [AWT-EventQueue-0] (RegionStorage.java:253) getRegion - Try to open region ComparaisonTemasIsis(C:\ISIS-Fish\src\isis-fish-data\regions\ComparaisonTemasIsis) WARN [AWT-EventQueue-0] (TopiaContextImpl.java:1389) initSecurityType - Type de sécurité inconnu : null INFO [AWT-EventQueue-0] (Environment.java:499) <clinit> - Hibernate 3.2 cr2 INFO [AWT-EventQueue-0] (Environment.java:532) <clinit> - hibernate.properties not found INFO [AWT-EventQueue-0] (Environment.java:666) buildBytecodeProvider - Bytecode provider name : cglib INFO [AWT-EventQueue-0] (Environment.java:583) <clinit> - using JDK 1.4 java.sql.Timestamp handling INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/StrategyMonthInfoImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.StrategyMonthInfoImpl -> strategymonthinfo INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/GearImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.GearImpl -> gear INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SetOfVesselsImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SetOfVesselsImpl -> setofvessels INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/EffortDescriptionImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.EffortDescriptionImpl -> effortdescription INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/FisheryRegionImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.FisheryRegionImpl -> fisheryregion INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationSeasonInfoImpl.hbm.xml INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SeasonImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SeasonImpl -> season INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PortImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PortImpl -> port INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SelectivityImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SelectivityImpl -> selectivity INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/TargetSpeciesImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.TargetSpeciesImpl -> targetspecies INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/CellImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.CellImpl -> cell INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ActiveRuleImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ActiveRuleImpl -> activerule INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ResultImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ResultImpl -> result INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/EquationImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.EquationImpl -> equation INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/MetierSeasonInfoImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:795) bindUnionSubclass - Mapping union-subclass: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl -> metierseasoninfo INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl.zone -> metierseasoninfo_zone INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PopulationImpl -> population INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.reproductionZone -> population_reproductionzone INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationZone -> population_populationzone INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.recruitmentZone -> population_recruitmentzone INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/StrategyImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.StrategyImpl -> strategy INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationGroupImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PopulationGroupImpl -> populationgroup INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/TripTypeImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.TripTypeImpl -> triptype INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/VesselTypeImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.VesselTypeImpl -> vesseltype INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.VesselTypeImpl.tripType -> triptype_vesseltype INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SpeciesImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SpeciesImpl -> species INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/MetierImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.MetierImpl -> metier INFO [AWT-EventQueue-0] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ZoneImpl.hbm.xml INFO [AWT-EventQueue-0] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ZoneImpl -> zone INFO [AWT-EventQueue-0] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.ZoneImpl.cell -> cell_zone INFO [AWT-EventQueue-0] (HbmBinder.java:795) bindUnionSubclass - Mapping union-subclass: fr.ifremer.isisfish.entities.PopulationSeasonInfoImpl -> populationseasoninfo INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.GearImpl.populationSelectivity -> selectivity INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.SetOfVesselsImpl.possibleMetiers -> effortdescription INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl.speciesTargetSpecies -> targetspecies INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationGroup -> populationgroup INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationSeasonInfo -> populationseasoninfo INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.StrategyImpl.strategyMonthInfo -> strategymonthinfo INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.SpeciesImpl.population -> population INFO [AWT-EventQueue-0] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.MetierImpl.metierSeasonInfo -> metierseasoninfo INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:41) configure - Using Hibernate built-in connection pool (not for production use!) INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:42) configure - Hibernate connection pool size: 20 INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:45) configure - autocommit mode: false INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:80) configure - using driver: org.h2.Driver at URL: jdbc:h2:file:C:\ISIS-Fish\src\isis-fish-data\regions\ComparaisonTemasIsis\data\data;FILE_LOCK=socket;MODE=hsqldb;DEFAULT_LOCK_TIMEOUT=5000;ASSERT=0;DB_CLOSE_DELAY=-1;LOCK_MODE=2;LOG=1;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=1 INFO [AWT-EventQueue-0] (DriverManagerConnectionProvider.java:86) configure - connection properties: {user=sa, password=****} INFO [AWT-EventQueue-0] (SettingsFactory.java:78) buildSettings - RDBMS: H2, version: 1.0 (2006-08-31) INFO [AWT-EventQueue-0] (SettingsFactory.java:79) buildSettings - JDBC driver: H2 JDBC Driver, version: 1.0 (2006-08-31) INFO [AWT-EventQueue-0] (Dialect.java:141) <init> - Using dialect: org.hibernate.dialect.HSQLDialect INFO [AWT-EventQueue-0] (TransactionFactoryFactory.java:31) buildTransactionFactory - Using default transaction strategy (direct JDBC transactions) INFO [AWT-EventQueue-0] (TransactionManagerLookupFactory.java:33) getTransactionManagerLookup - No TransactionManagerLookup configured (in JTA environment, use of read-write or transactional second-level cache is not recommended) INFO [AWT-EventQueue-0] (SettingsFactory.java:126) buildSettings - Automatic flush during beforeCompletion(): disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:130) buildSettings - Automatic session close at end of transaction: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:137) buildSettings - JDBC batch size: 15 INFO [AWT-EventQueue-0] (SettingsFactory.java:140) buildSettings - JDBC batch updates for versioned data: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:145) buildSettings - Scrollable result sets: enabled INFO [AWT-EventQueue-0] (SettingsFactory.java:153) buildSettings - JDBC3 getGeneratedKeys(): enabled INFO [AWT-EventQueue-0] (SettingsFactory.java:161) buildSettings - Connection release mode: auto INFO [AWT-EventQueue-0] (SettingsFactory.java:188) buildSettings - Default batch fetch size: 1 INFO [AWT-EventQueue-0] (SettingsFactory.java:192) buildSettings - Generate SQL with comments: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:196) buildSettings - Order SQL updates by primary key: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:357) createQueryTranslatorFactory - Query translator: org.hibernate.hql.ast.ASTQueryTranslatorFactory INFO [AWT-EventQueue-0] (ASTQueryTranslatorFactory.java:24) <init> - Using ASTQueryTranslatorFactory INFO [AWT-EventQueue-0] (SettingsFactory.java:204) buildSettings - Query language substitutions: {} INFO [AWT-EventQueue-0] (SettingsFactory.java:210) buildSettings - Second-level cache: enabled INFO [AWT-EventQueue-0] (SettingsFactory.java:214) buildSettings - Query cache: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:344) createCacheProvider - Cache provider: org.hibernate.cache.EhCacheProvider INFO [AWT-EventQueue-0] (SettingsFactory.java:229) buildSettings - Optimize cache for minimal puts: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:238) buildSettings - Structured second-level cache entries: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:265) buildSettings - Statistics: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:269) buildSettings - Deleted entity synthetic identifier rollback: disabled INFO [AWT-EventQueue-0] (SettingsFactory.java:284) buildSettings - Default entity-mode: pojo INFO [AWT-EventQueue-0] (SessionFactoryImpl.java:161) <init> - building session factory WARN [AWT-EventQueue-0] (ConfigurationFactory.java:127) parseConfiguration - No configuration found. Configuring ehcache from ehcache-failsafe.xml found in the classpath: jar:file:/C:/ISIS-Fish/lib/ehcache-1.2.1RC.jar!/ehcache-failsafe.xml INFO [AWT-EventQueue-0] (SessionFactoryObjectFactory.java:82) addInstance - Not binding factory to JNDI, no JNDI name configured INFO [AWT-EventQueue-0] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [AWT-EventQueue-0] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [AWT-EventQueue-0] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [AWT-EventQueue-0] (TopiaContextImpl.java:1140) fireOnCommited - onCommited Exception in thread "AWT-EventQueue-0" org.apache.commons.jxpath.JXPathException: Undefined variable: SimulationLaunched at org.apache.commons.jxpath.ri.model.VariablePointer$1.getImmediateNode(VariablePointer.java:123) at org.apache.commons.jxpath.ri.model.NodePointer.getNode(NodePointer.java:305) at org.apache.commons.jxpath.ri.model.NodePointer.getValue(NodePointer.java:217) at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getValue(JXPathContextReferenceImpl.java:347) at org.apache.commons.jxpath.ri.JXPathContextReferenceImpl.getValue(JXPathContextReferenceImpl.java:280) at org.swixat.framework.action.HandleClassMethodAction.computeArgument(HandleClassMethodAction.java:276) at org.swixat.framework.action.HandleClassMethodAction.invoke(HandleClassMethodAction.java:196) at org.swixat.framework.action.HandleClassMethodAction.handleClassMethod(HandleClassMethodAction.java:145) at org.swixat.framework.action.HandleClassMethodAction.doCommand(HandleClassMethodAction.java:89) at org.swixat.framework.action.ActionManager.doCommand(ActionManager.java:99) at org.swixat.framework.AbstractFrame.executeCommand(AbstractFrame.java:148) at org.swixat.framework.AbstractFrame.actionPerformed(AbstractFrame.java:95) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1849) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2169) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:420) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:258) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236) at java.awt.Component.processMouseEvent(Component.java:5488) at javax.swing.JComponent.processMouseEvent(JComponent.java:3126) at java.awt.Component.processEvent(Component.java:5253) at java.awt.Container.processEvent(Container.java:1966) at java.awt.Component.dispatchEventImpl(Component.java:3955) at java.awt.Container.dispatchEventImpl(Container.java:2024) at java.awt.Component.dispatchEvent(Component.java:3803) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4212) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:3892) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:3822) at java.awt.Container.dispatchEventImpl(Container.java:2010) at java.awt.Window.dispatchEventImpl(Window.java:1778) at java.awt.Component.dispatchEvent(Component.java:3803) at java.awt.EventQueue.dispatchEvent(EventQueue.java:463) at java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:242) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:163) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:157) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:149) at java.awt.EventDispatchThread.run(EventDispatchThread.java:110) INFO [SimulationQueueThread local] (SimulationThread.java:125) <init> - backup database for simulation in C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158132222737-trieco\region.xml INFO [SimulationQueueThread local] (SimulationThread.java:131) <init> - backup database finished for simulation in C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158132222737-trieco\region.xml DEBUG [SimulationQueueThread local] (FileUtil.java:567) copyRecursively - copyRecursively: [] DEBUG [SimulationQueueThread local] (FileUtil.java:567) copyRecursively - copyRecursively: [C:\ISIS-Fish\src\isis-fish-data\exports\CVS, C:\ISIS-Fish\src\isis-fish-data\exports\CVS\Entries, C:\ISIS-Fish\src\isis-fish-data\exports\CVS\Repository, C:\ISIS-Fish\src\isis-fish-data\exports\CVS\Root, C:\ISIS-Fish\src\isis-fish-data\exports\CVS\Template] DEBUG [SimulationQueueThread local] (FileUtil.java:567) copyRecursively - copyRecursively: [C:\ISIS-Fish\src\isis-fish-data\scripts\CVS, C:\ISIS-Fish\src\isis-fish-data\scripts\GravityModel.java, C:\ISIS-Fish\src\isis-fish-data\scripts\ResultName.java, C:\ISIS-Fish\src\isis-fish-data\scripts\SiMatrix.java, C:\ISIS-Fish\src\isis-fish-data\scripts\CVS\Entries, C:\ISIS-Fish\src\isis-fish-data\scripts\CVS\Repository, C:\ISIS-Fish\src\isis-fish-data\scripts\CVS\Root, C:\ISIS-Fish\src\isis-fish-data\scripts\CVS\Template] DEBUG [SimulationQueueThread local] (FileUtil.java:576) copyRecursively - copy \scripts\GravityModel.java to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158132222737-trieco\scripts\GravityModel.java DEBUG [SimulationQueueThread local] (FileUtil.java:576) copyRecursively - copy \scripts\ResultName.java to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158132222737-trieco\scripts\ResultName.java DEBUG [SimulationQueueThread local] (FileUtil.java:576) copyRecursively - copy \scripts\SiMatrix.java to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158132222737-trieco\scripts\SiMatrix.java DEBUG [SimulationQueueThread local] (FileUtil.java:567) copyRecursively - copyRecursively: [C:\ISIS-Fish\src\isis-fish-data\simulators\CVS, C:\ISIS-Fish\src\isis-fish-data\simulators\DefaultSimulator.java, C:\ISIS-Fish\src\isis-fish-data\simulators\CVS\Entries, C:\ISIS-Fish\src\isis-fish-data\simulators\CVS\Repository, C:\ISIS-Fish\src\isis-fish-data\simulators\CVS\Root, C:\ISIS-Fish\src\isis-fish-data\simulators\CVS\Template] DEBUG [SimulationQueueThread local] (FileUtil.java:576) copyRecursively - copy \simulators\DefaultSimulator.java to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158132222737-trieco\simulators\DefaultSimulator.java Note: C:\DOCUME~1\hdrouine\LOCALS~1\Temp\isisfish-simultation-1158132222737-trieco\scripts\SiMatrix.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. INFO [SimulationQueueThread local] (SimulationThread.java:173) <init> - Comilation time 3.284s INFO [SimulationQueueThread local] (SimulationThread.java:179) <init> - Classloader used for simulation: java.net.URLClassLoader@13ac14d INFO [SimulationThread trieco] (SimulationThread.java:191) run - Simulation thread Thread[SimulationThread trieco,6,main] starting at 13/09/06 09:23 (Memoire libre/Memoire Total = 226 281 136/266 469 376) INFO [SimulationThread trieco] (SimulationThread.java:221) runLocalSimulation - Mise en place des aspects Trace Deployer::INFO - deploying aspect [fr.ifremer.isisfish.aspect.Trace] in class loader [java.net.URLClassLoader@13ac14d] INFO [SimulationThread trieco] (SimulationThread.java:225) runLocalSimulation - Mise en place des aspects Cache Deployer::INFO - deploying aspect [fr.ifremer.isisfish.aspect.Cache] in class loader [java.net.URLClassLoader@13ac14d] WARN [SimulationThread trieco] (TopiaContextImpl.java:1389) initSecurityType - Type de sécurité inconnu : null INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/StrategyMonthInfoImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.StrategyMonthInfoImpl -> strategymonthinfo INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/GearImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.GearImpl -> gear INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SetOfVesselsImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SetOfVesselsImpl -> setofvessels INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/EffortDescriptionImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.EffortDescriptionImpl -> effortdescription INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/FisheryRegionImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.FisheryRegionImpl -> fisheryregion INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationSeasonInfoImpl.hbm.xml INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SeasonImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SeasonImpl -> season INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PortImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PortImpl -> port INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SelectivityImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SelectivityImpl -> selectivity INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/TargetSpeciesImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.TargetSpeciesImpl -> targetspecies INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/CellImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.CellImpl -> cell INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ActiveRuleImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ActiveRuleImpl -> activerule INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ResultImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ResultImpl -> result INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/EquationImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.EquationImpl -> equation INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/MetierSeasonInfoImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:795) bindUnionSubclass - Mapping union-subclass: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl -> metierseasoninfo INFO [SimulationThread trieco] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl.zone -> metierseasoninfo_zone INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PopulationImpl -> population INFO [SimulationThread trieco] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.reproductionZone -> population_reproductionzone INFO [SimulationThread trieco] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationZone -> population_populationzone INFO [SimulationThread trieco] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.recruitmentZone -> population_recruitmentzone INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/StrategyImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.StrategyImpl -> strategy INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/PopulationGroupImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.PopulationGroupImpl -> populationgroup INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/TripTypeImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.TripTypeImpl -> triptype INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/VesselTypeImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.VesselTypeImpl -> vesseltype INFO [SimulationThread trieco] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.VesselTypeImpl.tripType -> triptype_vesseltype INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/SpeciesImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.SpeciesImpl -> species INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/MetierImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.MetierImpl -> metier INFO [SimulationThread trieco] (Configuration.java:535) addClass - Reading mappings from resource: fr/ifremer/isisfish/entities/ZoneImpl.hbm.xml INFO [SimulationThread trieco] (HbmBinder.java:298) bindRootPersistentClassCommonValues - Mapping class: fr.ifremer.isisfish.entities.ZoneImpl -> zone INFO [SimulationThread trieco] (HbmBinder.java:1394) bindCollection - Mapping collection: fr.ifremer.isisfish.entities.ZoneImpl.cell -> cell_zone INFO [SimulationThread trieco] (HbmBinder.java:795) bindUnionSubclass - Mapping union-subclass: fr.ifremer.isisfish.entities.PopulationSeasonInfoImpl -> populationseasoninfo INFO [SimulationThread trieco] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.GearImpl.populationSelectivity -> selectivity INFO [SimulationThread trieco] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.SetOfVesselsImpl.possibleMetiers -> effortdescription INFO [SimulationThread trieco] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.MetierSeasonInfoImpl.speciesTargetSpecies -> targetspecies INFO [SimulationThread trieco] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationGroup -> populationgroup INFO [SimulationThread trieco] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.PopulationImpl.populationSeasonInfo -> populationseasoninfo INFO [SimulationThread trieco] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.StrategyImpl.strategyMonthInfo -> strategymonthinfo INFO [SimulationThread trieco] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.SpeciesImpl.population -> population INFO [SimulationThread trieco] (HbmBinder.java:2346) bindCollectionSecondPass - Mapping collection: fr.ifremer.isisfish.entities.MetierImpl.metierSeasonInfo -> metierseasoninfo INFO [SimulationThread trieco] (DriverManagerConnectionProvider.java:41) configure - Using Hibernate built-in connection pool (not for production use!) INFO [SimulationThread trieco] (DriverManagerConnectionProvider.java:42) configure - Hibernate connection pool size: 20 INFO [SimulationThread trieco] (DriverManagerConnectionProvider.java:45) configure - autocommit mode: false INFO [SimulationThread trieco] (DriverManagerConnectionProvider.java:80) configure - using driver: org.h2.Driver at URL: jdbc:h2:file:C:\ISIS-Fish\src\isis-fish-data\simulations\trieco\data\data;FILE_LOCK=socket;MODE=hsqldb;DEFAULT_LOCK_TIMEOUT=5000;ASSERT=0;DB_CLOSE_DELAY=-1;LOCK_MODE=2;LOG=1;TRACE_LEVEL_FILE=0;TRACE_LEVEL_SYSTEM_OUT=1 INFO [SimulationThread trieco] (DriverManagerConnectionProvider.java:86) configure - connection properties: {user=sa, password=****} INFO [SimulationThread trieco] (SettingsFactory.java:78) buildSettings - RDBMS: H2, version: 1.0 (2006-08-31) INFO [SimulationThread trieco] (SettingsFactory.java:79) buildSettings - JDBC driver: H2 JDBC Driver, version: 1.0 (2006-08-31) INFO [SimulationThread trieco] (Dialect.java:141) <init> - Using dialect: org.hibernate.dialect.HSQLDialect INFO [SimulationThread trieco] (TransactionFactoryFactory.java:31) buildTransactionFactory - Using default transaction strategy (direct JDBC transactions) INFO [SimulationThread trieco] (TransactionManagerLookupFactory.java:33) getTransactionManagerLookup - No TransactionManagerLookup configured (in JTA environment, use of read-write or transactional second-level cache is not recommended) INFO [SimulationThread trieco] (SettingsFactory.java:126) buildSettings - Automatic flush during beforeCompletion(): disabled INFO [SimulationThread trieco] (SettingsFactory.java:130) buildSettings - Automatic session close at end of transaction: disabled INFO [SimulationThread trieco] (SettingsFactory.java:137) buildSettings - JDBC batch size: 15 INFO [SimulationThread trieco] (SettingsFactory.java:140) buildSettings - JDBC batch updates for versioned data: disabled INFO [SimulationThread trieco] (SettingsFactory.java:145) buildSettings - Scrollable result sets: enabled INFO [SimulationThread trieco] (SettingsFactory.java:153) buildSettings - JDBC3 getGeneratedKeys(): enabled INFO [SimulationThread trieco] (SettingsFactory.java:161) buildSettings - Connection release mode: auto INFO [SimulationThread trieco] (SettingsFactory.java:188) buildSettings - Default batch fetch size: 1 INFO [SimulationThread trieco] (SettingsFactory.java:192) buildSettings - Generate SQL with comments: disabled INFO [SimulationThread trieco] (SettingsFactory.java:196) buildSettings - Order SQL updates by primary key: disabled INFO [SimulationThread trieco] (SettingsFactory.java:357) createQueryTranslatorFactory - Query translator: org.hibernate.hql.ast.ASTQueryTranslatorFactory INFO [SimulationThread trieco] (ASTQueryTranslatorFactory.java:24) <init> - Using ASTQueryTranslatorFactory INFO [SimulationThread trieco] (SettingsFactory.java:204) buildSettings - Query language substitutions: {} INFO [SimulationThread trieco] (SettingsFactory.java:210) buildSettings - Second-level cache: enabled INFO [SimulationThread trieco] (SettingsFactory.java:214) buildSettings - Query cache: disabled INFO [SimulationThread trieco] (SettingsFactory.java:344) createCacheProvider - Cache provider: org.hibernate.cache.EhCacheProvider INFO [SimulationThread trieco] (SettingsFactory.java:229) buildSettings - Optimize cache for minimal puts: disabled INFO [SimulationThread trieco] (SettingsFactory.java:238) buildSettings - Structured second-level cache entries: disabled INFO [SimulationThread trieco] (SettingsFactory.java:265) buildSettings - Statistics: disabled INFO [SimulationThread trieco] (SettingsFactory.java:269) buildSettings - Deleted entity synthetic identifier rollback: disabled INFO [SimulationThread trieco] (SettingsFactory.java:284) buildSettings - Default entity-mode: pojo INFO [SimulationThread trieco] (SessionFactoryImpl.java:161) <init> - building session factory WARN [SimulationThread trieco] (ConfigurationFactory.java:127) parseConfiguration - No configuration found. Configuring ehcache from ehcache-failsafe.xml found in the classpath: jar:file:/C:/ISIS-Fish/lib/ehcache-1.2.1RC.jar!/ehcache-failsafe.xml WARN [SimulationThread trieco] (CacheManager.java:276) detectAndFixDiskStorePathConflict - Creating a new instance of CacheManager using the diskStorePath "C:\DOCUME~1\hdrouine\LOCALS~1\Temp\" which is already used by an existing CacheManager. The source of the configuration was classpath. The diskStore path for this CacheManager will be set to C:\DOCUME~1\hdrouine\LOCALS~1\Temp\\ehcache_auto_created_1158132227537. To avoid this warning consider using the CacheManager factory methods to create a singleton CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager instance. INFO [SimulationThread trieco] (SessionFactoryObjectFactory.java:82) addInstance - Not binding factory to JNDI, no JNDI name configured INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (SimulatorHelper.java:123) simulate - Simulation execution INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1167) fireOnRollbacked - onRollbacked INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [SimulationThread trieco] (TopiaContextImpl.java:1140) fireOnCommited - onCommited INFO [AWT-EventQueue-0] (AbstractBeanFactory.java:217) getBean - Creating shared instance of singleton bean 'exit' 09-13 10:07:36 jdbc[0]: Uncaught Exception 09-13 10:07:36 jdbc[0]: Uncaught Exception WARN [SimulationThread trieco] (JDBCExceptionReporter.java:71) logExceptions - SQL Error: 50000, SQLState: HY000 ERROR [SimulationThread trieco] (JDBCExceptionReporter.java:72) logExceptions - General error: java.lang.NullPointerException [HY000-25] WARN [SimulationThread trieco] (ResultStorage.java:241) getMatrix - Can't return matrix 'matrixCatchWeightPerStrategyMet plie' for date april 3 org.codelutin.topia.TopiaException: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:181) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.findByProperties(TopiaDAOHibernate.java:142) at org.codelutin.topia.persistence.TopiaDAOAbstract.findByProperties(TopiaDAOAbstract.java:383) at org.codelutin.topia.persistence.TopiaDAODelegator.findByProperties(TopiaDAODelegator.java:185) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:235) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:216) at scripts.GravityModel.aw$original$_AW_$getCatchWeightPerStrMet$_AW_$scripts_GravityModel(GravityModel.java:494) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__74411571__1569581108___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.getCatchWeightPerStrMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerSpeciesPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:476) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerSpeciesPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:555) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:638) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:686) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netRenevueToSharePerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:730) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netRenevueToSharePerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:824) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:912) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$matrixOwnerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:888) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.matrixOwnerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at simulators.DefaultSimulator.aw$original$_AW_$saveGravityModel$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:428) at simulators.DefaultSimulator_1__1242956842_1239655192___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.saveGravityModel(DefaultSimulator.java) at simulators.DefaultSimulator.aw$original$_AW_$simulate$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:234) at simulators.DefaultSimulator_1_869596014__1739552001___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.simulate(DefaultSimulator.java) at fr.ifremer.isisfish.simulator.SimulatorHelper.simulate(SimulatorHelper.java:130) at fr.ifremer.isisfish.simulator.SimulationThread.runLocalSimulation(SimulationThread.java:244) at fr.ifremer.isisfish.simulator.SimulationThread.run(SimulationThread.java:197) Caused by: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:420) at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144) at org.hibernate.jdbc.AbstractBatcher.prepareQueryStatement(AbstractBatcher.java:139) at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1561) at org.hibernate.loader.Loader.doQuery(Loader.java:661) at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:224) at org.hibernate.loader.Loader.doList(Loader.java:2145) at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2029) at org.hibernate.loader.Loader.list(Loader.java:2024) at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:95) at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1562) at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:283) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:175) ... 77 more Caused by: org.h2.jdbc.JdbcSQLException: General error: java.lang.NullPointerException [HY000-25] at org.h2.message.Message.getSQLException(Message.java:67) at org.h2.message.Message.convert(Message.java:347) at org.h2.message.TraceObject.logAndConvert(TraceObject.java:168) at org.h2.jdbc.JdbcConnection.getAutoCommit(JdbcConnection.java:292) at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:104) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417) ... 89 more WARN [SimulationThread trieco] (JDBCExceptionReporter.java:71) logExceptions - SQL Error: 50000, SQLState: HY000 ERROR [SimulationThread trieco] (JDBCExceptionReporter.java:72) logExceptions - General error: java.lang.IllegalStateException: Shutdown in progress [HY000-25] WARN [SimulationThread trieco] (ResultStorage.java:241) getMatrix - Can't return matrix 'matrixDiscardsWeightPerStrMet plie' for date april 3 org.codelutin.topia.TopiaException: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:181) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.findByProperties(TopiaDAOHibernate.java:142) at org.codelutin.topia.persistence.TopiaDAOAbstract.findByProperties(TopiaDAOAbstract.java:383) at org.codelutin.topia.persistence.TopiaDAODelegator.findByProperties(TopiaDAODelegator.java:185) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:235) at fr.ifremer.isisfish.datastore.ResultStorage.getMatrix(ResultStorage.java:216) at scripts.GravityModel.aw$original$_AW_$getDiscardsWeightPerStrMet$_AW_$scripts_GravityModel(GravityModel.java:511) at scripts.GravityModel_1_1958420743__2081663218___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_1958420743__2081663218___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_1958420743__2081663218___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.getDiscardsWeightPerStrMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerSpeciesPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:477) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__1721073828_106784860___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerSpeciesPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$grossValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:555) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_526114560__1395373961___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.grossValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMet$_AW_$scripts_GravityModel(GravityModel.java:638) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_857654489__1432173630___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMet(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netValueOfLandingsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:686) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_138282092__1191682629___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netValueOfLandingsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$netRenevueToSharePerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:730) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_620123178__841294475___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.netRenevueToSharePerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyMetPerVessel$_AW_$scripts_GravityModel(GravityModel.java:824) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_961405242__330153819___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyMetPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$ownerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:912) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1__378574596__603920200___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.ownerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at scripts.GravityModel.aw$original$_AW_$matrixOwnerMarginOverVariableCostsPerStrategyPerVessel$_AW_$scripts_GravityModel(GravityModel.java:888) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at fr.ifremer.isisfish.aspect.Cache.realCall(Cache.java:107) at fr.ifremer.isisfish.aspect.Cache.call(Cache.java:84) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.proceed(Unknown Source) at scripts.GravityModel_1_137867748__798648283___AW_JoinPoint.invoke(Unknown Source) at scripts.GravityModel.matrixOwnerMarginOverVariableCostsPerStrategyPerVessel(GravityModel.java) at simulators.DefaultSimulator.aw$original$_AW_$saveGravityModel$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:428) at simulators.DefaultSimulator_1__1242956842_1239655192___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.saveGravityModel(DefaultSimulator.java) at simulators.DefaultSimulator.aw$original$_AW_$simulate$_AW_$simulators_DefaultSimulator(DefaultSimulator.java:234) at simulators.DefaultSimulator_1_869596014__1739552001___AW_JoinPoint.invoke(Unknown Source) at simulators.DefaultSimulator.simulate(DefaultSimulator.java) at fr.ifremer.isisfish.simulator.SimulatorHelper.simulate(SimulatorHelper.java:130) at fr.ifremer.isisfish.simulator.SimulationThread.runLocalSimulation(SimulationThread.java:244) at fr.ifremer.isisfish.simulator.SimulationThread.run(SimulationThread.java:197) Caused by: org.hibernate.exception.GenericJDBCException: Cannot open connection at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:420) at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144) at org.hibernate.jdbc.AbstractBatcher.prepareQueryStatement(AbstractBatcher.java:139) at org.hibernate.loader.Loader.prepareQueryStatement(Loader.java:1561) at org.hibernate.loader.Loader.doQuery(Loader.java:661) at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyCollections(Loader.java:224) at org.hibernate.loader.Loader.doList(Loader.java:2145) at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2029) at org.hibernate.loader.Loader.list(Loader.java:2024) at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:95) at org.hibernate.impl.SessionImpl.list(SessionImpl.java:1562) at org.hibernate.impl.CriteriaImpl.list(CriteriaImpl.java:283) at org.codelutin.topia.persistence.hibernate.TopiaDAOHibernate.query(TopiaDAOHibernate.java:175) ... 77 more Caused by: org.h2.jdbc.JdbcSQLException: General error: java.lang.IllegalStateException: Shutdown in progress [HY000-25] at org.h2.message.Message.getSQLException(Message.java:67) at org.h2.message.Message.convert(Message.java:347) at org.h2.message.TraceObject.logAndConvert(TraceObject.java:168) at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:907) at org.h2.Driver.connect(Driver.java:44) at java.sql.DriverManager.getConnection(DriverManager.java:525) at java.sql.DriverManager.getConnection(DriverManager.java:140) at org.hibernate.connection.DriverManagerConnectionProvider.getConnection(DriverManagerConnectionProvider.java:110) at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:417) ... 89 more

1 0

interface R pour plotter les resultats d'isis-fish
by Francois.Bastardie＠ifremer.fr 06 Sep '06

06 Sep '06

Bonjour, ci-joint : modification du script de l'interface R tenant compte des dernières modifications du pack de gestion d'isis qui change la forme des exports .csv. ATTENTION: le package R 'tcltk2' est désormais requis pour lancer l'interface-> il doit être installer dans R avant... Bonjour à tous, Pouvant en intéresser certains, vous trouverez ci-joint un script R très simple qui permet de lancer une interface minimaliste pour générer à partir des fichiers exports .csv d'isis-fish (générés par les scripts d'Hilaire) tous les graphs que propose isis dans son interface (+ exactement pour l'instant les abondances, les captures, les efforts; une ou deux lignes de code devront être ajoutées pour plotter d'autres données) il faut simplement sourcer ce script sous R puis lancer la fonction principale pour que l'interface s'ouvre. Par exemple: source('Q:/sourcesR/ModelBrest/withFLFleet&Metiers/Isis-FLR-30Aug06-demo/exportFromIsis/interfaceExportFromIsisINDEPENDANT.r') interfaceExportFromIsis() -- -------------------------------------------------------- François Bastardie French Research Institute for the Development of the Sea (IFREMER) Ecologie et Modèles pour l'Halieutique Rue de l'Ile d'Yeu BP 21105 44311 NANTES Cedex 03 - France Tél : 02 40 37 41 64 Fax : 02 40 37 40 75 E-mail : francois.bastardie(a)ifremer.fr #--------------------------------------------------------- #--------------------------------------------------------- # Plotting from Isis-Fish .csv export files in R console # using an R interface (tcltk tools). # ***31 August 06*** # François Bastardie # IFREMER, dep EMH, Nantes #--------------------------------------------------------- #--------------------------------------------------------- # to launch this interface in independante way # source this current script in a R session # and launch interfaceExportFromIsis(TRUE) function. #------------------------------------ #------------------------------------ interfaceExportFromIsis <- function(INDEPENDANTE=FALSE) { require(tcltk) require(tcltk2) ttPlotIsis <<- tktoplevel(height =100,width =700) tktitle(ttPlotIsis) <- "plotting from isis-fish" fontHeading <- tkfont.create(family="arial",size=11) fonttPlotIsisextLabel <- tkfont.create(family="arial",size=10) # helpful information scr <- tkscrollbar(ttPlotIsis, repeatinterval=5, command=function(...)tkyview(txt,...)) txt <- tk2text(ttPlotIsis,bg="white",font="courier",height =5,width =80,yscrollcommand=function(...)tkset(scr,...)) tkgrid(txt,scr,columnspan=5) tkgrid.configure(scr,sticky="ewns") tkinsert(txt,"end","Plotting data from Isis-fish export .csv files:\nSet the path with your path, choose the year.dep in the 21th century, adapt the arguments using names of fleets, the type of data (CapturePoids, etc.) or TRUE/FALSE as needed (see 'args' fields) and tick the data you want to be plotted before clicking on OK button") tkconfigure(txt, state="disabled") tkfocus(txt) tkgrid(tk2label(ttPlotIsis,text=" ")) tkgrid(tk2label(ttPlotIsis,text=" ")) listForPlotting <<-list() a.vect <- c("namesim") if(INDEPENDANTE==FALSE) for (rr in a.vect) { if(!exists("aFileName")) tkmessageBox(title="error", message="you have to simulate or load an existing simulation...") if(!is.null(aFileName)) {a <- unlist(strsplit(aFileName,split="/")); b<- unlist(strsplit(a[length(a)],split=".",fixed=TRUE)) ; aText <<- b[2]} else aText <- as.character(namesim[length(namesim)]) listForPlotting[[rr]] <<- tkentry(ttPlotIsis,width=40,textvariable=tclVar(aText)) tkgrid(tk2label(ttPlotIsis,text="current isis-flr simulation"),listForPlotting[[rr]]) } tkgrid(tk2label(ttPlotIsis,text=" ")) # for setting the graph options listOptionsPath<<-list(); exportPathFromIsis<<-NULL ;repository.name<<-NULL listOptionsNumeric<<-list();year.dep <<-1 ;leg.location<<-1/4 aText7 <<- c("exportPathFromIsis","repository.name") aText8 <<- c("year.dep","leg.location") default.values7 <- c("Q:\\sourcesR\\ModelBrest\\withFLFleet&Metiers\\Isis-FLR-6Sep06\\output\\compareWithIsisFish\\", "hake.ttesStrategiesWithSpain&hakeBox-jum&VHVO..-06_09_2006-1033\\") default.values8 <- c("1","1/4") for (hh in 1:length(aText7)) { listOptionsPath[[hh]] <<- tkentry(ttPlotIsis,width=50,textvariable=tclVar(default.values7[hh])) tkgrid(tk2label(ttPlotIsis,text=aText7[hh]),listOptionsPath[[hh]]) } for (hh in 1:length(aText8)) { listOptionsNumeric[[hh]] <<- tkentry(ttPlotIsis,width=50,textvariable=tclVar(default.values8[hh])) tkgrid(tk2label(ttPlotIsis,text=aText8[hh]),listOptionsNumeric[[hh]]) } tkgrid(tk2label(ttPlotIsis,text=" ")) tkgrid(tk2label(ttPlotIsis,text=" ")) listForPlotIsis <<-list() ; cbValForPlotIsis <<-list() typeOfArgs <- c("aFleet=\"HakeLargeGuilvinec\" perFleet=TRUE typedata=\"CapturesPoids\" aStock=\"merluccius\" perAge=FALSE perZone=FALSE", "aStock=\"merluccius\" typedata=\"Biomasses\" perAge=FALSE perZone=FALSE perFleet=FALSE aFleet=\"all\"", "aStock=\"merluccius\" typedata=\"Biomasses\" perAge=TRUE perZone=FALSE perFleet=FALSE aFleet=\"all\"", "aStock=\"merluccius\" typedata=\"Abondances\" perAge=TRUE perZone=FALSE perFleet=FALSE aFleet=\"all\"", "aFleet=\"HakeLargeGuilvinec\" perFleet=TRUE typedata=\"EffortsMetier\" perAge=FALSE perZone=FALSE aStock=\"\"" ) typeOfFunc <- c("plottingIsisExports", "plottingIsisExports", "plottingIsisExports", "plottingIsisExports", "plottingIsisExports" ) typeOfFunc <- unlist(strsplit(typeOfFunc," ")) it<-1 for (tof in 1 : length(typeOfFunc)) { listForPlotIsis[[it]] <<- tkentry(ttPlotIsis,width=30,text=tclVar(as.character(typeOfFunc[tof]))) listForPlotIsis[[it+1]] <<- tkentry(ttPlotIsis,width=70,textvariable=tclVar(as.character(typeOfArgs[tof]))) listForPlotIsis[[it+2]] <<- tk2checkbutton(ttPlotIsis) cbValForPlotIsis[[it]] <<-0;cbValForPlotIsis[[it+1]]<<-0;cbValForPlotIsis[[it+2]]<<- tclVar("0") tkconfigure(listForPlotIsis[[it+2]],variable=cbValForPlotIsis[[it+2]]) # indispensable! tkgrid( tk2label(ttPlotIsis,text=paste(" function:")),listForPlotIsis[[it]], tk2label(ttPlotIsis,text=paste(" args:")),listForPlotIsis[[it+1]], tk2label(ttPlotIsis,text=paste(" enabled:")),listForPlotIsis[[it+2]] ) it<-it+3 } tkgrid(tk2label(ttPlotIsis,text=" ")) tkgrid(tk2label(ttPlotIsis,text=" ")) OK.but <- tk2button(ttPlotIsis, text=" OK ",command=executePlotIsis) Cancel.but <- tk2button(ttPlotIsis,text=" Cancel ",command= function() tkdestroy(ttPlotIsis)) tkgrid(tk2label(ttPlotIsis,text=" "),tk2label(ttPlotIsis,text=" "),OK.but,Cancel.but) tkfocus(ttPlotIsis) #tkwait.window(ttPlotIsis) return() } #--- executePlotIsis <- function() { tkfocus(ttPlotIsis) # eval plotting options (character) for (hh in 1 :length(aText7)) { #eval(parse("",text=paste(aText7[hh]," <<- eval(parse(\"\",text=tclvalue(tkget(listOptionsPath[[hh]]))))"))) # assign new value as global eval(parse("",text=paste(aText7[hh]," <<- as.character(tclvalue(tkget(listOptionsPath[[hh]])))"))) # assign new value as global } # eval plotting options (numeric) for (hh in 1 :length(aText8)) { eval(parse("",text=paste(aText8[hh]," <<- eval(parse('',text=tclvalue(tkget(listOptionsNumeric[[hh]]))))"))) # assign new value as global } i<-1 while ( i< length(listForPlotIsis)) # for each function { if(as.character(tclvalue(cbValForPlotIsis[[i+2]]))=="1") # if the check button is enabled for this function... { func <- as.character(tclvalue(tkget(listForPlotIsis[[i]]))) arguments <- as.character(tclvalue(tkget(listForPlotIsis[[i+1]]))) arguments <- paste(unlist(strsplit(arguments," ")),collapse=",") print(arguments) eval(parse("",text=paste(func,"(",arguments,")"))) } i <- i+3 } # end while tkdestroy(ttPlotIsis) } #---------------------------------------- #---------------------------------------- #---------------------------------------- # fonction split du dataf en dataf par population (fonctionne pour capture ou abondance) splitPop <- function (dataf,nomdudataf) { listPop <- unique(dataf$population) #nomdudataf <- paste("dataf.",nom) splitInPop.f <- function (i,ledataf,nomdudataf, listPop) { ledataf.pop <- ledataf[ledataf$population == listPop[i],] assign(paste(nomdudataf,".", as.character(listPop[i]),sep=""),ledataf.pop, env = .GlobalEnv) } lapply(1:length(listPop), splitInPop.f, dataf, nomdudataf, listPop) } #---------------------------------------- # fonction split du dataf en dataf par population (fonctionne pour capture ou abondance) splitPop <- function (dataf,nomdudataf) { listPop <- unique(dataf$population) #nomdudataf <- paste("dataf.",nom) splitInPop.f <- function (i,ledataf,nomdudataf, listPop) { ledataf.pop <- ledataf[ledataf$population == listPop[i],] assign(paste(nomdudataf,".", as.character(listPop[i]),sep=""),ledataf.pop, env = .GlobalEnv) } lapply(1:length(listPop), splitInPop.f, dataf, nomdudataf, listPop) } #---------------------------------------- # fonction split du dataf en dataf par fleet splitStrg <- function (dataf,nomdudataf) { listStrg <- unique(dataf$strategy) #nomdudataf <- paste("dataf.",nom) splitInStrg.f <- function (i,ledataf,nomdudataf, listStrg) { ledataf.strg <- ledataf[ledataf$strategy == listStrg[i],] assign(paste(nomdudataf,".", as.character(listStrg[i]),sep=""),ledataf.strg, env = .GlobalEnv) } lapply(1:length(listStrg), splitInStrg.f, dataf, nomdudataf, listStrg) } #---------------------------------------- #---------------------------------------- #---------------------------------------- plottingIsisExports <-function(aStock,typedata,perAge,perZone,perFleet,aFleet,...) { palette(rainbow(16)) # 16 colors... if(!exists("leg.location")) leg.location <- 1/4 # placer la legende 1/4 au dessus de la valeur max if(!exists("year.dep")) { warning("you should set the 'year.dep' variable as a global variable...") year.dep <- 1 # i.e. 2001 } if((!exists("exportPathFromIsis") && !exists("repository.name")) || (is.null("exportPathFromIsis") || is.null("repository.name"))) { warning("you should set a path for the 'repository.name' variable as a global variable...") path <- "Q:\\sourcesR\\ModelBrest\\withFLFleet&Metiers\\Isis-FLR-1Sep06\\output\\compareWithIsisFish\\hake.ttesStrategiesWithSpain&hakeBox-jum&VHVO..-05_09_2006-1222\\" } else { path <-paste(exportPathFromIsis,repository.name,sep="")} print(path) dataf <- read.csv(paste(path,typedata,".csv",sep="") ,sep=";") if(typedata=="CapturesPoids" || typedata=="CapturesNombre") names(dataf) <- c("population","strategy","metier","age","zonepop","date",typedata) if(typedata=="Biomasses" || typedata=="Abondances") names(dataf) <- c("population","age","zonepop","date",typedata) if(typedata=="EffortsMetier") names(dataf) <- c("strategy","metier","date",typedata) if(any("strategy"==names(dataf))) { if(aFleet!="all") { # 1. split en fleet (~strg) listStrg <- unique(dataf$strategy) splitStrg (dataf, paste("dataf.",typedata,sep="")) dataf1 <<- get(paste("dataf.",typedata,".",aFleet,sep="")) } else dataf1 <<- dataf } else {perFleet<-FALSE ;dataf1 <<- dataf} if(any("population"==names(dataf1))) { # 1. split en population listPop <<- unique(dataf1$population) if(length(listPop)>1) { splitPop (dataf1, paste("dataf1.",typedata,sep="")) dataf2 <<- get(paste("dataf1.",typedata,".",aStock,sep="")) } else dataf2 <<- dataf1 } else dataf2 <<- dataf1 ########################## #plotting per date if(perZone==FALSE && perFleet==FALSE) { if(perAge==TRUE) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date,age=dataf2$age),sum) names(ww) #library(lattice) ; bwplot(x~date,ww,groups=zone) # faire plutôt: www<- split(ww,ww$age) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) leg[["name"]] <- c(leg[["name"]],as.character(www[[i]]$age[1])) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) } title(main=paste(typedata,"per age for",aStock)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]], cex = 0.7) } else { palette("default") windows() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date),sum) names(ww) X <- matrix(as.numeric(as.matrix(ww)),ncol=2) plot(0,0,xlim=c(0,max(X[,1])),ylim=c(0,max(X[,2])),xlab="date",ylab=typedata,type="n",axes=FALSE) title(main=paste(typedata,"for",aStock)) lines(X[,1],X[,2],col=1) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) # legend() } # end else } ########################## #plotting per date per zone if(perZone==TRUE && perFleet==FALSE) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date,zone=dataf2$zone),sum) names(ww) #library(lattice) ; bwplot(x~date,ww,groups=zone) # faire plutôt: www<- split(ww,ww$zone) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) leg[["name"]] <- c(leg[["name"]],as.character(www[[i]]$zone[1])) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) } title(main=paste(typedata,"per zone for",aStock)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]], cex = 0.7) } ########################## #if metier, plotting per date per metier if(perZone==FALSE && perFleet==TRUE) { if(any("metier"==names(dataf2))) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date,strategy=dataf2$strategy,metier=dataf2$metier),sum) names(ww) www<- split(ww,list(ww$strategy,ww$metier)) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) ;points(X[,1],X[,2],col=i,pch=i,cex=0.5) leg[["name"]] <- c(leg[["name"]],paste(www[[i]]$strategy[1],"-",www[[i]]$metier[1],sep="")) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) leg[["pch"]] <- c(leg[["pch"]] ,i) } title(main=paste(typedata,"per strategy per metier for",aFleet)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]],pch = leg[["pch"]], cex = 0.7) } else{warning(paste("no 'metier' field is defined in the",typedata," data file"))} } ########################## #if metier, plotting per date per metier per zone if(perZone==TRUE && perFleet==TRUE) { if(any("metier"==names(dataf1))) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date,strategy=dataf2$strategy,metier=dataf2$metier,zone=dataf2$zone),sum) names(ww) www<- split(ww,list(ww$strategy,ww$metier,ww$zone)) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,xlim=c(0,max(as.numeric(ww$date))),ylim=c(0,max(as.numeric(ww$x))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) ;points(X[,1],X[,2],col=i,pch=i,cex=0.5) leg[["name"]] <- c(leg[["name"]],paste(www[[i]]$strategy[1],"-",www[[i]]$metier[1],"-",www[[i]]$zone[1],sep="")) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) leg[["pch"]] <- c(leg[["pch"]] ,i) } title(main=paste(typedata,"per strategy per metier per zone for",aFleet)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]],pch = leg[["pch"]], cex = 0.7) } else{warning(paste("no 'metier' field is defined in the",typedata," data file"))} } return() }

2 1

interface R pour plotter les resultats d'isis-fish
by Francois.Bastardie＠ifremer.fr 06 Sep '06

06 Sep '06

re-bonjour, J'ai oublié de dire que l'interface se lance sous R par: > interfaceExportFromIsis(TRUE) Bonjour, ci-joint : modification du script de l'interface R tenant compte des dernières modifications du pack de gestion d'isis qui change la forme des exports .csv. ATTENTION: le package R 'tcltk2' est désormais requis pour lancer l'interface-> il doit être installer dans R avant... Bonjour à tous, Pouvant en intéresser certains, vous trouverez ci-joint un script R très simple qui permet de lancer une interface minimaliste pour générer à partir des fichiers exports .csv d'isis-fish (générés par les scripts d'Hilaire) tous les graphs que propose isis dans son interface (+ exactement pour l'instant les abondances, les captures, les efforts; une ou deux lignes de code devront être ajoutées pour plotter d'autres données) il faut simplement sourcer ce script sous R puis lancer la fonction principale pour que l'interface s'ouvre. Par exemple: source('Q:/sourcesR/ModelBrest/withFLFleet&Metiers/Isis-FLR-30Aug06-demo/exportFromIsis/interfaceExportFromIsisINDEPENDANT.r') interfaceExportFromIsis() -- -------------------------------------------------------- François Bastardie French Research Institute for the Development of the Sea (IFREMER) Ecologie et Modèles pour l'Halieutique Rue de l'Ile d'Yeu BP 21105 44311 NANTES Cedex 03 - France Tél : 02 40 37 41 64 Fax : 02 40 37 40 75 E-mail : francois.bastardie(a)ifremer.fr #--------------------------------------------------------- #--------------------------------------------------------- # Plotting from Isis-Fish .csv export files in R console # using an R interface (tcltk tools). # ***31 August 06*** # François Bastardie # IFREMER, dep EMH, Nantes #--------------------------------------------------------- #--------------------------------------------------------- # to launch this interface in independante way # source this current script in a R session # and launch interfaceExportFromIsis(TRUE) function. #------------------------------------ #------------------------------------ interfaceExportFromIsis <- function(INDEPENDANTE=FALSE) { require(tcltk) require(tcltk2) ttPlotIsis <<- tktoplevel(height =100,width =700) tktitle(ttPlotIsis) <- "plotting from isis-fish" fontHeading <- tkfont.create(family="arial",size=11) fonttPlotIsisextLabel <- tkfont.create(family="arial",size=10) # helpful information scr <- tkscrollbar(ttPlotIsis, repeatinterval=5, command=function(...)tkyview(txt,...)) txt <- tk2text(ttPlotIsis,bg="white",font="courier",height =5,width =80,yscrollcommand=function(...)tkset(scr,...)) tkgrid(txt,scr,columnspan=5) tkgrid.configure(scr,sticky="ewns") tkinsert(txt,"end","Plotting data from Isis-fish export .csv files:\nSet the path with your path, choose the year.dep in the 21th century, adapt the arguments using names of fleets, the type of data (CapturePoids, etc.) or TRUE/FALSE as needed (see 'args' fields) and tick the data you want to be plotted before clicking on OK button") tkconfigure(txt, state="disabled") tkfocus(txt) tkgrid(tk2label(ttPlotIsis,text=" ")) tkgrid(tk2label(ttPlotIsis,text=" ")) listForPlotting <<-list() a.vect <- c("namesim") if(INDEPENDANTE==FALSE) for (rr in a.vect) { if(!exists("aFileName")) tkmessageBox(title="error", message="you have to simulate or load an existing simulation...") if(!is.null(aFileName)) {a <- unlist(strsplit(aFileName,split="/")); b<- unlist(strsplit(a[length(a)],split=".",fixed=TRUE)) ; aText <<- b[2]} else aText <- as.character(namesim[length(namesim)]) listForPlotting[[rr]] <<- tkentry(ttPlotIsis,width=40,textvariable=tclVar(aText)) tkgrid(tk2label(ttPlotIsis,text="current isis-flr simulation"),listForPlotting[[rr]]) } tkgrid(tk2label(ttPlotIsis,text=" ")) # for setting the graph options listOptionsPath<<-list(); exportPathFromIsis<<-NULL ;repository.name<<-NULL listOptionsNumeric<<-list();year.dep <<-1 ;leg.location<<-1/4 aText7 <<- c("exportPathFromIsis","repository.name") aText8 <<- c("year.dep","leg.location") default.values7 <- c("Q:\\sourcesR\\ModelBrest\\withFLFleet&Metiers\\Isis-FLR-6Sep06\\output\\compareWithIsisFish\\", "hake.ttesStrategiesWithSpain&hakeBox-jum&VHVO..-06_09_2006-1033\\") default.values8 <- c("1","1/4") for (hh in 1:length(aText7)) { listOptionsPath[[hh]] <<- tkentry(ttPlotIsis,width=50,textvariable=tclVar(default.values7[hh])) tkgrid(tk2label(ttPlotIsis,text=aText7[hh]),listOptionsPath[[hh]]) } for (hh in 1:length(aText8)) { listOptionsNumeric[[hh]] <<- tkentry(ttPlotIsis,width=50,textvariable=tclVar(default.values8[hh])) tkgrid(tk2label(ttPlotIsis,text=aText8[hh]),listOptionsNumeric[[hh]]) } tkgrid(tk2label(ttPlotIsis,text=" ")) tkgrid(tk2label(ttPlotIsis,text=" ")) listForPlotIsis <<-list() ; cbValForPlotIsis <<-list() typeOfArgs <- c("aFleet=\"HakeLargeGuilvinec\" perFleet=TRUE typedata=\"CapturesPoids\" aStock=\"merluccius\" perAge=FALSE perZone=FALSE", "aStock=\"merluccius\" typedata=\"Biomasses\" perAge=FALSE perZone=FALSE perFleet=FALSE aFleet=\"all\"", "aStock=\"merluccius\" typedata=\"Biomasses\" perAge=TRUE perZone=FALSE perFleet=FALSE aFleet=\"all\"", "aStock=\"merluccius\" typedata=\"Abondances\" perAge=TRUE perZone=FALSE perFleet=FALSE aFleet=\"all\"", "aFleet=\"HakeLargeGuilvinec\" perFleet=TRUE typedata=\"EffortsMetier\" perAge=FALSE perZone=FALSE aStock=\"\"" ) typeOfFunc <- c("plottingIsisExports", "plottingIsisExports", "plottingIsisExports", "plottingIsisExports", "plottingIsisExports" ) typeOfFunc <- unlist(strsplit(typeOfFunc," ")) it<-1 for (tof in 1 : length(typeOfFunc)) { listForPlotIsis[[it]] <<- tkentry(ttPlotIsis,width=30,text=tclVar(as.character(typeOfFunc[tof]))) listForPlotIsis[[it+1]] <<- tkentry(ttPlotIsis,width=70,textvariable=tclVar(as.character(typeOfArgs[tof]))) listForPlotIsis[[it+2]] <<- tk2checkbutton(ttPlotIsis) cbValForPlotIsis[[it]] <<-0;cbValForPlotIsis[[it+1]]<<-0;cbValForPlotIsis[[it+2]]<<- tclVar("0") tkconfigure(listForPlotIsis[[it+2]],variable=cbValForPlotIsis[[it+2]]) # indispensable! tkgrid( tk2label(ttPlotIsis,text=paste(" function:")),listForPlotIsis[[it]], tk2label(ttPlotIsis,text=paste(" args:")),listForPlotIsis[[it+1]], tk2label(ttPlotIsis,text=paste(" enabled:")),listForPlotIsis[[it+2]] ) it<-it+3 } tkgrid(tk2label(ttPlotIsis,text=" ")) tkgrid(tk2label(ttPlotIsis,text=" ")) OK.but <- tk2button(ttPlotIsis, text=" OK ",command=executePlotIsis) Cancel.but <- tk2button(ttPlotIsis,text=" Cancel ",command= function() tkdestroy(ttPlotIsis)) tkgrid(tk2label(ttPlotIsis,text=" "),tk2label(ttPlotIsis,text=" "),OK.but,Cancel.but) tkfocus(ttPlotIsis) #tkwait.window(ttPlotIsis) return() } #--- executePlotIsis <- function() { tkfocus(ttPlotIsis) # eval plotting options (character) for (hh in 1 :length(aText7)) { #eval(parse("",text=paste(aText7[hh]," <<- eval(parse(\"\",text=tclvalue(tkget(listOptionsPath[[hh]]))))"))) # assign new value as global eval(parse("",text=paste(aText7[hh]," <<- as.character(tclvalue(tkget(listOptionsPath[[hh]])))"))) # assign new value as global } # eval plotting options (numeric) for (hh in 1 :length(aText8)) { eval(parse("",text=paste(aText8[hh]," <<- eval(parse('',text=tclvalue(tkget(listOptionsNumeric[[hh]]))))"))) # assign new value as global } i<-1 while ( i< length(listForPlotIsis)) # for each function { if(as.character(tclvalue(cbValForPlotIsis[[i+2]]))=="1") # if the check button is enabled for this function... { func <- as.character(tclvalue(tkget(listForPlotIsis[[i]]))) arguments <- as.character(tclvalue(tkget(listForPlotIsis[[i+1]]))) arguments <- paste(unlist(strsplit(arguments," ")),collapse=",") print(arguments) eval(parse("",text=paste(func,"(",arguments,")"))) } i <- i+3 } # end while tkdestroy(ttPlotIsis) } #---------------------------------------- #---------------------------------------- #---------------------------------------- # fonction split du dataf en dataf par population (fonctionne pour capture ou abondance) splitPop <- function (dataf,nomdudataf) { listPop <- unique(dataf$population) #nomdudataf <- paste("dataf.",nom) splitInPop.f <- function (i,ledataf,nomdudataf, listPop) { ledataf.pop <- ledataf[ledataf$population == listPop[i],] assign(paste(nomdudataf,".", as.character(listPop[i]),sep=""),ledataf.pop, env = .GlobalEnv) } lapply(1:length(listPop), splitInPop.f, dataf, nomdudataf, listPop) } #---------------------------------------- # fonction split du dataf en dataf par population (fonctionne pour capture ou abondance) splitPop <- function (dataf,nomdudataf) { listPop <- unique(dataf$population) #nomdudataf <- paste("dataf.",nom) splitInPop.f <- function (i,ledataf,nomdudataf, listPop) { ledataf.pop <- ledataf[ledataf$population == listPop[i],] assign(paste(nomdudataf,".", as.character(listPop[i]),sep=""),ledataf.pop, env = .GlobalEnv) } lapply(1:length(listPop), splitInPop.f, dataf, nomdudataf, listPop) } #---------------------------------------- # fonction split du dataf en dataf par fleet splitStrg <- function (dataf,nomdudataf) { listStrg <- unique(dataf$strategy) #nomdudataf <- paste("dataf.",nom) splitInStrg.f <- function (i,ledataf,nomdudataf, listStrg) { ledataf.strg <- ledataf[ledataf$strategy == listStrg[i],] assign(paste(nomdudataf,".", as.character(listStrg[i]),sep=""),ledataf.strg, env = .GlobalEnv) } lapply(1:length(listStrg), splitInStrg.f, dataf, nomdudataf, listStrg) } #---------------------------------------- #---------------------------------------- #---------------------------------------- plottingIsisExports <-function(aStock,typedata,perAge,perZone,perFleet,aFleet,...) { palette(rainbow(16)) # 16 colors... if(!exists("leg.location")) leg.location <- 1/4 # placer la legende 1/4 au dessus de la valeur max if(!exists("year.dep")) { warning("you should set the 'year.dep' variable as a global variable...") year.dep <- 1 # i.e. 2001 } if((!exists("exportPathFromIsis") && !exists("repository.name")) || (is.null("exportPathFromIsis") || is.null("repository.name"))) { warning("you should set a path for the 'repository.name' variable as a global variable...") path <- "Q:\\sourcesR\\ModelBrest\\withFLFleet&Metiers\\Isis-FLR-1Sep06\\output\\compareWithIsisFish\\hake.ttesStrategiesWithSpain&hakeBox-jum&VHVO..-05_09_2006-1222\\" } else { path <-paste(exportPathFromIsis,repository.name,sep="")} print(path) dataf <- read.csv(paste(path,typedata,".csv",sep="") ,sep=";") if(typedata=="CapturesPoids" || typedata=="CapturesNombre") names(dataf) <- c("population","strategy","metier","age","zonepop","date",typedata) if(typedata=="Biomasses" || typedata=="Abondances") names(dataf) <- c("population","age","zonepop","date",typedata) if(typedata=="EffortsMetier") names(dataf) <- c("strategy","metier","date",typedata) if(any("strategy"==names(dataf))) { if(aFleet!="all") { # 1. split en fleet (~strg) listStrg <- unique(dataf$strategy) splitStrg (dataf, paste("dataf.",typedata,sep="")) dataf1 <<- get(paste("dataf.",typedata,".",aFleet,sep="")) } else dataf1 <<- dataf } else {perFleet<-FALSE ;dataf1 <<- dataf} if(any("population"==names(dataf1))) { # 1. split en population listPop <<- unique(dataf1$population) if(length(listPop)>1) { splitPop (dataf1, paste("dataf1.",typedata,sep="")) dataf2 <<- get(paste("dataf1.",typedata,".",aStock,sep="")) } else dataf2 <<- dataf1 } else dataf2 <<- dataf1 ########################## #plotting per date if(perZone==FALSE && perFleet==FALSE) { if(perAge==TRUE) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date,age=dataf2$age),sum) names(ww) #library(lattice) ; bwplot(x~date,ww,groups=zone) # faire plutôt: www<- split(ww,ww$age) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) leg[["name"]] <- c(leg[["name"]],as.character(www[[i]]$age[1])) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) } title(main=paste(typedata,"per age for",aStock)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]], cex = 0.7) } else { palette("default") windows() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date),sum) names(ww) X <- matrix(as.numeric(as.matrix(ww)),ncol=2) plot(0,0,xlim=c(0,max(X[,1])),ylim=c(0,max(X[,2])),xlab="date",ylab=typedata,type="n",axes=FALSE) title(main=paste(typedata,"for",aStock)) lines(X[,1],X[,2],col=1) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) # legend() } # end else } ########################## #plotting per date per zone if(perZone==TRUE && perFleet==FALSE) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date,zone=dataf2$zone),sum) names(ww) #library(lattice) ; bwplot(x~date,ww,groups=zone) # faire plutôt: www<- split(ww,ww$zone) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) leg[["name"]] <- c(leg[["name"]],as.character(www[[i]]$zone[1])) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) } title(main=paste(typedata,"per zone for",aStock)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]], cex = 0.7) } ########################## #if metier, plotting per date per metier if(perZone==FALSE && perFleet==TRUE) { if(any("metier"==names(dataf2))) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date,strategy=dataf2$strategy,metier=dataf2$metier),sum) names(ww) www<- split(ww,list(ww$strategy,ww$metier)) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) ;points(X[,1],X[,2],col=i,pch=i,cex=0.5) leg[["name"]] <- c(leg[["name"]],paste(www[[i]]$strategy[1],"-",www[[i]]$metier[1],sep="")) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) leg[["pch"]] <- c(leg[["pch"]] ,i) } title(main=paste(typedata,"per strategy per metier for",aFleet)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]],pch = leg[["pch"]], cex = 0.7) } else{warning(paste("no 'metier' field is defined in the",typedata," data file"))} } ########################## #if metier, plotting per date per metier per zone if(perZone==TRUE && perFleet==TRUE) { if(any("metier"==names(dataf1))) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf2$",typedata,sep=""))),by=list(date = dataf2$date,strategy=dataf2$strategy,metier=dataf2$metier,zone=dataf2$zone),sum) names(ww) www<- split(ww,list(ww$strategy,ww$metier,ww$zone)) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,xlim=c(0,max(as.numeric(ww$date))),ylim=c(0,max(as.numeric(ww$x))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) ;points(X[,1],X[,2],col=i,pch=i,cex=0.5) leg[["name"]] <- c(leg[["name"]],paste(www[[i]]$strategy[1],"-",www[[i]]$metier[1],"-",www[[i]]$zone[1],sep="")) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) leg[["pch"]] <- c(leg[["pch"]] ,i) } title(main=paste(typedata,"per strategy per metier per zone for",aFleet)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]],pch = leg[["pch"]], cex = 0.7) } else{warning(paste("no 'metier' field is defined in the",typedata," data file"))} } return() }

1 0

interface R pour plotter les resultats d'isis-fish
by Francois.Bastardie＠ifremer.fr 01 Sep '06

01 Sep '06

Bonjour à tous, Pouvant en intéresser certains, vous trouverez ci-joint un script R très simple qui permet de lancer une interface minimaliste pour générer à partir des fichiers exports .csv d'isis-fish (générés par les scripts d'Hilaire) tous les graphs que propose isis dans son interface (+ exactement pour l'instant les abondances, les captures, les efforts; une ou deux lignes de code devront être ajoutées pour plotter d'autres données) il faut simplement sourcer ce script sous R puis lancer la fonction principale pour que l'interface s'ouvre. Par exemple: source('Q:/sourcesR/ModelBrest/withFLFleet&Metiers/Isis-FLR-30Aug06-demo/exportFromIsis/interfaceExportFromIsisINDEPENDANT.r') interfaceExportFromIsis() -- -------------------------------------------------------- François Bastardie French Research Institute for the Development of the Sea (IFREMER) Ecologie et Modèles pour l'Halieutique Rue de l'Ile d'Yeu BP 21105 44311 NANTES Cedex 03 - France Tél : 02 40 37 41 64 Fax : 02 40 37 40 75 E-mail : francois.bastardie(a)ifremer.fr #--------------------------------------------------------- #--------------------------------------------------------- # Plotting from Isis-Fish .csv export files in R console # using an R interface (tcltk tools). # ***31 August 06*** # François Bastardie # IFREMER, dep EMH, Nantes #--------------------------------------------------------- #--------------------------------------------------------- # source this current script in a R session # and launch interfaceExportFromIsis() function. #------------------------------------ #------------------------------------ interfaceExportFromIsis <- function() { require(tcltk) ttPlotIsis <<- tktoplevel(height =100,width =700) tktitle(ttPlotIsis) <- "plotting from isis-fish" fontHeading <- tkfont.create(family="arial",size=11) fonttPlotIsisextLabel <- tkfont.create(family="arial",size=10) # helpful information scr <- tkscrollbar(ttPlotIsis, repeatinterval=5, command=function(...)tkyview(txt,...)) txt <- tktext(ttPlotIsis,bg="white",font="courier",height =5,width =80,yscrollcommand=function(...)tkset(scr,...)) tkgrid(txt,scr,columnspan=5) tkgrid.configure(scr,sticky="ewns") tkinsert(txt,"end","Plotting data from Isis-fish export .csv files:\nSet the path with your path, choose the year.dep in the 21th century, adapt the arguments using names of fleets, the type of data (CapturePoids, etc.) or TRUE/FALSE as needed (see 'args' fields) and tick the data you want to be plotted before clicking on OK button") tkconfigure(txt, state="disabled") tkfocus(txt) tkgrid(tklabel(ttPlotIsis,text=" ")) tkgrid(tklabel(ttPlotIsis,text=" ")) listForPlotting <<-list() a.vect <- c("namesim") tkgrid(tklabel(ttPlotIsis,text=" ")) # for setting the graph options listOptionsPath<<-list(); exportPathFromIsis<<-NULL ;repository.name<<-NULL listOptionsNumeric<<-list();year.dep <<-1 ;leg.location<<-1/4 aText7 <<- c("exportPathFromIsis","repository.name") aText8 <<- c("year.dep","leg.location") default.values7 <- c("Q:\\sourcesR\\ModelBrest\\withFLFleet&Metiers\\Isis-FLR-30Aug06-demo\\output\\compareWithIsisFish\\", "hake.ttesStrategiesWithSpain&hakeBox-jum&VHVO..-31_08_2006-1414\\") default.values8 <- c("1","1/4") for (hh in 1:length(aText7)) { listOptionsPath[[hh]] <<- tkentry(ttPlotIsis,width=70,textvariable=tclVar(default.values7[hh])) tkgrid(tklabel(ttPlotIsis,text=aText7[hh]),listOptionsPath[[hh]]) } for (hh in 1:length(aText8)) { listOptionsNumeric[[hh]] <<- tkentry(ttPlotIsis,width=70,textvariable=tclVar(default.values8[hh])) tkgrid(tklabel(ttPlotIsis,text=aText8[hh]),listOptionsNumeric[[hh]]) } tkgrid(tklabel(ttPlotIsis,text=" ")) tkgrid(tklabel(ttPlotIsis,text=" ")) listForPlotIsis <<-list() ; cbValForPlotIsis <<-list() typeOfArgs <- c("aStock=\"merluccius\" typedata=\"CapturesPoids\" perZone=FALSE perMetier=FALSE", "aStock=\"merluccius\" typedata=\"Biomasses\" perZone=FALSE perMetier=FALSE", "aFleet=\"all\" typedata=\"EffortsMetier\" perFleet=FALSE perMetier=FALSE" ) typeOfFunc <- c("plottingStockIsis", "plottingStockIsis", "plottingFleetIsis" ) typeOfFunc <- unlist(strsplit(typeOfFunc," ")) it<-1 for (tof in 1 : length(typeOfFunc)) { listForPlotIsis[[it]] <<- tkentry(ttPlotIsis,width=30,text=tclVar(as.character(typeOfFunc[tof]))) listForPlotIsis[[it+1]] <<- tkentry(ttPlotIsis,width=50,textvariable=tclVar(as.character(typeOfArgs[tof]))) listForPlotIsis[[it+2]] <<- tkcheckbutton(ttPlotIsis) cbValForPlotIsis[[it]] <<-0;cbValForPlotIsis[[it+1]]<<-0;cbValForPlotIsis[[it+2]]<<- tclVar("0") tkconfigure(listForPlotIsis[[it+2]],variable=cbValForPlotIsis[[it+2]]) # indispensable! tkgrid( tklabel(ttPlotIsis,text=paste(" function:")),listForPlotIsis[[it]], tklabel(ttPlotIsis,text=paste(" args:")),listForPlotIsis[[it+1]], tklabel(ttPlotIsis,text=paste(" enabled:")),listForPlotIsis[[it+2]] ) it<-it+3 } tkgrid(tklabel(ttPlotIsis,text=" ")) tkgrid(tklabel(ttPlotIsis,text=" ")) OK.but <- tkbutton(ttPlotIsis, text=" OK ",command=executePlotIsis) Cancel.but <- tkbutton(ttPlotIsis,text=" Cancel ",command= function() tkdestroy(ttPlotIsis)) tkgrid(tklabel(ttPlotIsis,text=" "),OK.but,Cancel.but) tkfocus(ttPlotIsis) return() } #--- executePlotIsis <- function() { tkfocus(ttPlotIsis) # eval plotting options (character) for (hh in 1 :length(aText7)) { #eval(parse("",text=paste(aText7[hh]," <<- eval(parse(\"\",text=tclvalue(tkget(listOptionsPath[[hh]]))))"))) # assign new value as global eval(parse("",text=paste(aText7[hh]," <<- as.character(tclvalue(tkget(listOptionsPath[[hh]])))"))) # assign new value as global } # eval plotting options (numeric) for (hh in 1 :length(aText8)) { eval(parse("",text=paste(aText8[hh]," <<- eval(parse('',text=tclvalue(tkget(listOptionsNumeric[[hh]]))))"))) # assign new value as global } i<-1 while ( i< length(listForPlotIsis)) # for each function { if(as.character(tclvalue(cbValForPlotIsis[[i+2]]))=="1") # if the check button is enabled for this function... { func <- as.character(tclvalue(tkget(listForPlotIsis[[i]]))) arguments <- as.character(tclvalue(tkget(listForPlotIsis[[i+1]]))) arguments <- paste(unlist(strsplit(arguments," ")),collapse=",") print(arguments) eval(parse("",text=paste(func,"(",arguments,")"))) } i <- i+3 } # end while tkdestroy(ttPlotIsis) } #---------------------------------------- #---------------------------------------- #---------------------------------------- # fonction split du dataf en dataf par population (fonctionne pour capture ou abondance) splitPop <- function (dataf,nomdudataf) { listPop <- unique(dataf$population) #nomdudataf <- paste("dataf.",nom) splitInPop.f <- function (i,ledataf,nomdudataf, listPop) { ledataf.pop <- ledataf[ledataf$population == listPop[i],] assign(paste(nomdudataf,".", as.character(listPop[i]),sep=""),ledataf.pop, env = .GlobalEnv) } lapply(1:length(listPop), splitInPop.f, dataf, nomdudataf, listPop) } #---------------------------------------- # fonction split du dataf en dataf par population (fonctionne pour capture ou abondance) splitPop <- function (dataf,nomdudataf) { listPop <- unique(dataf$population) #nomdudataf <- paste("dataf.",nom) splitInPop.f <- function (i,ledataf,nomdudataf, listPop) { ledataf.pop <- ledataf[ledataf$population == listPop[i],] assign(paste(nomdudataf,".", as.character(listPop[i]),sep=""),ledataf.pop, env = .GlobalEnv) } lapply(1:length(listPop), splitInPop.f, dataf, nomdudataf, listPop) } #---------------------------------------- # fonction split du dataf en dataf par fleet splitStrg <- function (dataf,nomdudataf) { listStrg <- unique(dataf$strg) #nomdudataf <- paste("dataf.",nom) splitInStrg.f <- function (i,ledataf,nomdudataf, listStrg) { ledataf.strg <- ledataf[ledataf$strg == listStrg[i],] assign(paste(nomdudataf,".", as.character(listStrg[i]),sep=""),ledataf.strg, env = .GlobalEnv) } lapply(1:length(listStrg), splitInStrg.f, dataf, nomdudataf, listStrg) } #---------------------------------------- #---------------------------------------- #---------------------------------------- plottingFleetIsis <-function(aFleet,typedata,perFleet,perMetier,...) { palette(rainbow(16)) # 16 colors... if(!exists("leg.location")) { warning("you should set the 'leg.location' variable as global variable...") leg.location <- 1/4 } # placer la legende 1/4 au dessus de la valeur max if(!exists("year.dep")) { warning("you should set the 'year.dep' variable as global variable...") year.dep <- 1 # i.e. 2001 } if(!exists("exportPathFromIsis") && !exists("repository.name") ) { warning("you should set a path for data repository as global variable...") path <- "Q:\\sourcesR\\ModelBrest\\withFLFleet&Metiers\\Isis-FLR-v22Aout06\\output\\compareWithIsisFish\\hake.ttesStrategiesWithSpain-25_08_2006-1216\\" } else { path <-paste(exportPathFromIsis,repository.name,sep="")} dataf <- read.csv(paste(path,typedata,".csv",sep="") ,sep=";") if(typedata=="EffortsMetier") names(dataf) <- c("strg","metier","date",typedata) if(aFleet!="all") { # 1. split en fleet (~strg) listStrg <- unique(dataf$strg) splitStrg (dataf, paste("dataf.",typedata,sep="")) dataf1 <<- get(paste("dataf.",typedata,".",aFleet,sep="")) } else dataf1 <<- dataf if(perFleet==FALSE && perMetier==FALSE) { palette("default") windows() ww <- aggregate(eval(parse("",text=paste("dataf1$",typedata,sep=""))),by=list(date = dataf1$date),sum) names(ww) X <- matrix(as.numeric(as.matrix(ww)),ncol=2) plot(0,0,xlim=c(0,max(X[,1])),ylim=c(0,max(X[,2])),xlab="date",ylab=typedata,type="n",axes=FALSE) title(main=paste(typedata,"for",aFleet)) lines(X[,1],X[,2],col=1) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) # legend() } ########################## #plotting per date per fleet if(perFleet==TRUE && perMetier==FALSE) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf1$",typedata,sep=""))),by=list(date = dataf1$date,strg=dataf1$strg),sum) names(ww) #library(lattice) ; bwplot(x~date,ww,groups=zone) # faire plutôt: www<- split(ww,ww$strg) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) ;points(X[,1],X[,2],col=i,pch=i,cex=0.5) leg[["name"]] <- c(leg[["name"]],as.character(www[[i]]$strg[1])) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) leg[["pch"]] <- c(leg[["pch"]] ,i) } axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) title(main=paste(typedata,"per fleet for",aFleet)) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]],pch = leg[["pch"]], cex = 0.7) } ########################## #plotting per date per metier if(perFleet==FALSE && perMetier==TRUE) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf1$",typedata,sep=""))),by=list(date = dataf1$date,metier=dataf1$metier),sum) names(ww) #library(lattice) ; bwplot(x~date,ww,groups=zone) # faire plutôt: www<- split(ww,ww$metier) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) ;points(X[,1],X[,2],col=i,pch=i,cex=0.5) leg[["name"]] <- c(leg[["name"]],as.character(www[[i]]$metier[1])) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) leg[["pch"]] <- c(leg[["pch"]] ,i) } title(main=paste(typedata,"per metier for",aFleet)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]],pch = leg[["pch"]], cex = 0.7) } return() } #---------------------------------------- #---------------------------------------- #---------------------------------------- plottingStockIsis <-function(aStock,typedata,perZone,perMetier,...) { palette(rainbow(16)) # 16 colors... if(!exists("leg.location")) leg.location <- 1/4 # placer la legende 1/4 au dessus de la valeur max if(!exists("year.dep")) { warning("you should set the 'year.dep' variable as a global variable...") year.dep <- 1 # i.e. 2001 } if(!exists("exportPathFromIsis") && !exists("repository.name") ) { warning("you should set a path for the 'repository.name' variable as a global variable...") path <- "Q:\\sourcesR\\ModelBrest\\withFLFleet&Metiers\\Isis-FLR-30Aug06-demo\\output\\compareWithIsisFish\\hake.ttesStrategiesWithSpain&hakeBox-jum&VHVO..-31_08_2006-1414\\" } else { path <-paste(exportPathFromIsis,repository.name,sep="")} dataf <- read.csv(paste(path,typedata,".csv",sep="") ,sep=";") if(typedata=="CapturesPoids" || typedata=="CapturesNombre") names(dataf) <- c("population","metier","age","zonepop","date",typedata) if(typedata=="Biomasses" || typedata=="Abondances") names(dataf) <- c("population","age","zonepop","date",typedata) # 1. split en population listPop <<- unique(dataf$population) if(length(listPop)>1) { splitPop (dataf, paste("dataf.",typedata,sep="")) dataf1 <<- get(paste("dataf.",typedata,".",aStock,sep="")) } else dataf1 <<- dataf ########################## #plotting per date if(perZone==FALSE && perMetier==FALSE) { palette("default") windows() ww <- aggregate(eval(parse("",text=paste("dataf1$",typedata,sep=""))),by=list(date = dataf1$date),sum) names(ww) X <- matrix(as.numeric(as.matrix(ww)),ncol=2) plot(0,0,xlim=c(0,max(X[,1])),ylim=c(0,max(X[,2])),xlab="date",ylab=typedata,type="n",axes=FALSE) title(main=paste(typedata,"for",aStock)) lines(X[,1],X[,2],col=1) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) # legend() } ########################## #plotting per date per zone if(perZone==TRUE && perMetier==FALSE) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf1$",typedata,sep=""))),by=list(date = dataf1$date,zone=dataf1$zone),sum) names(ww) #library(lattice) ; bwplot(x~date,ww,groups=zone) # faire plutôt: www<- split(ww,ww$zone) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],lty=i,col=i) leg[["name"]] <- c(leg[["name"]],as.character(www[[i]]$zone[1])) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) } title(main=paste(typedata,"per zone for",aStock)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]], cex = 0.7) } ########################## #if metier, plotting per date per metier if(perZone==FALSE && perMetier==TRUE) { if(any("metier"==names(dataf1))) { windows() leg<-list() ww <- aggregate(eval(parse("",text=paste("dataf1$",typedata,sep=""))),by=list(date = dataf1$date,metier=dataf1$metier),sum) names(ww) www<- split(ww,ww$metier) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,ylab=typedata,xlab="date",xlim=c(0,max(as.numeric(ww$date))), ylim=c(0,max(as.numeric(ww$x))+leg.location*(max(as.numeric(ww$x)))),type="n",axes=FALSE) lines(X[,1],X[,2],col=i) leg[["name"]] <- c(leg[["name"]],as.character(www[[i]]$metier[1])) leg[["col"]] <- c(leg[["col"]],i) leg[["lty"]] <- c(leg[["lty"]] ,i) } title(main=paste(typedata,"per metier for",aStock)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) legend (1,(max(as.numeric(ww$x)))+leg.location*(max(as.numeric(ww$x))),leg[["name"]], col = leg[["col"]],lty = leg[["lty"]], cex = 0.7) } else{warning(paste("no 'metier' field is defined in the",typedata," data file"))} } ########################## #if metier, plotting per date per metier per zone if(perZone==TRUE && perMetier==TRUE) { if(any("metier"==names(dataf1))) { windows() ww <- aggregate(eval(parse("",text=paste("dataf1$",typedata,sep=""))),by=list(date = dataf1$date,metier=dataf1$metier,zone=dataf1$zone),sum) names(ww) www<- split(ww,list(ww$metier,ww$zone)) for (i in 1: length(www)) { X <- matrix(as.numeric(as.matrix(www[[i]][,c("date","x")])),ncol=2) if(i==1) plot(0,0,xlim=c(0,max(as.numeric(ww$date))),ylim=c(0,max(as.numeric(ww$x))),type="n",axes=FALSE) lines(X[,1],X[,2],col=i) } title(main=paste(typedata,"per metier per zone for",aStock)) axis(2) axis(1, at = seq(0,(max(X[,1])+1),by=12), labels = paste("200",year.dep:(year.dep+((max(X[,1])+1)/12)),sep="") ) # legend() } else{warning(paste("no 'metier' field is defined in the",typedata," data file"))} } return() }

1 0

suggestion
by Hilaire.Drouineau＠ifremer.fr 17 Aug '06

17 Aug '06

Salut tout le monde, Ne serait-il pas possible d'avoir dans la classe MatrixND une liste contenant uniquement les adresses mémoires (en java les pointeurs n'existent pas mais c'est peut etre possible avec des références?) correspondant à des cases valides de la matrice (c'est à dire celle qui correspondent à une combinaison métier x stratégie possible). Ca permettrait de parcourir la matrice encore plus rapidement qu'avec les itérateurs vu qu'on ne parcourerait que les cases de la matrice qui nous intéresse et qui en général ne sont pas si nomberuses... Je sais pas si c'est techniquement faisable en java et si le gain serait vraiment important... A+ Hilire

3 2

[annonce] Nouvelle version d'isis-fish 2.3.2
by Benjamin POUSSIN 27 Jul '06

27 Jul '06

Bonjour, Une nouvelle version d'isis-fish vient d'être mise en place : http://isis-fish.labs.libre-entreprise.org/download/version2/ifremer-simula… * correction de grossValueOfLandingsPerSpeciesPerStrategyMet qui ne tenait pas compte du prix -- Benjamin -------------------- tél: +33 (0) 2 40 50 29 28 email: poussin(a)codelutin.com () campagne du ruban ascii http://www.codelutin.com /\ pour les mails en ascii

1 0

[annonce] Nouvelle version d'isis-fish 2.3.1
by Benjamin POUSSIN 27 Jul '06

27 Jul '06

Bonjour, Une nouvelle version d'isis-fish vient d'être mise en place : http://isis-fish.labs.libre-entreprise.org/download/version2/ifremer-simula… * modification des equations economiques qui contenaient des erreurs il faut penser a modifier l'ancienne regle economique ou la supprimer et reprendre la nouvelle: http://isis-fish.labs.libre-entreprise.org/download/version2/ifremer-regle-… -- Benjamin -------------------- tél: +33 (0) 2 40 50 29 28 email: poussin(a)codelutin.com () campagne du ruban ascii http://www.codelutin.com /\ pour les mails en ascii

1 0

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